I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 2 09:09:25 -12 2026 I: pbuilder-time-stamp: 1775164165 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymatgen_2025.2.18+dfsg1-4.dsc] I: copying [./pymatgen_2025.2.18+dfsg1.orig.tar.xz] I: copying [./pymatgen_2025.2.18+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.2.18+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting pymatgen in pymatgen-2025.2.18+dfsg1 dpkg-source: info: unpacking pymatgen_2025.2.18+dfsg1.orig.tar.xz dpkg-source: info: unpacking pymatgen_2025.2.18+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_lammps_regex_path.patch dpkg-source: info: applying skip_nonfree_testfile.patch dpkg-source: info: applying CVE-2022-42964_ReDOS_vulnerability.patch dpkg-source: info: applying skip_test_zsl_numba.patch dpkg-source: info: applying no_sphinx_markdown_builder.patch dpkg-source: info: applying tests_init.patch dpkg-source: info: applying tests_pass_or_skip.patch dpkg-source: info: applying docs_index.patch dpkg-source: info: applying docs_libjs_local.patch dpkg-source: info: applying test_files_writing.patch dpkg-source: info: applying test_tolerance.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2332249/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2461a930957648808978bd4a3ba574b8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2332249' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ob6tzSDZ/pbuilderrc_PWGr --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ob6tzSDZ/b1 --logfile b1/build.log pymatgen_2025.2.18+dfsg1-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2332249/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2025.2.18~), dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2025.1.9~), python3-networkx (>= 3~), python3-numpy (>= 1.25.0~), python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 5.0.0~), python3-pybtex (>= 0.24.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-vtk9 | python3-paraview, python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.33.3~), python3-openbabel (>= 3.1.1~), packmol, dh-sequence-sphinxdoc, libjs-jquery, libjs-mathjax, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19779 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pymatgen-test-files (>= 2025.2.18~); however: Package pymatgen-test-files is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-frozendict; however: Package python3-frozendict is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 3.8~); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 2025.1.9~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 3~); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.25.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-palettable (>= 3.3.3~); however: Package python3-palettable is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 2~); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-plotly (>= 5.0.0~); however: Package python3-plotly is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex (>= 0.24.0~); however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-requests (>= 2.32~); however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml (>= 0.17.0~); however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.13.0~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.5.0~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy (>= 1.6.2~); however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate (>= 0.9~); however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm (>= 4.60~); however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.4~); however: Package python3-uncertainties is not installed. pbuilder-satisfydepends-dummy depends on python3-joblib (>= 1~); however: Package python3-joblib is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.23.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4 (>= 4.9.1~); however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-vtk9 | python3-paraview; however: Package python3-vtk9 is not installed. Package python3-paraview is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 3.11.0~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-netcdf4 (>= 1.6.5~); however: Package python3-netcdf4 is not installed. pbuilder-satisfydepends-dummy depends on python3-phonopy (>= 2.33.3~); however: Package python3-phonopy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel (>= 3.1.1~); however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on packmol; however: Package packmol is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libaec0{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcbor0.10{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglew2.2{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libice6{a} libicu72{a} libidn2-0{a} libimagequant0{a} libinchi1.07{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm17t64{a} libllvm19{a} liblzf1{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libmunge2{a} libnetcdf22{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libogg0{a} libopenbabel7{a} libopengl0{a} libopenjp2-7{a} libopenmpi40{a} libp11-kit0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libproj25{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5widgets5t64{a} libraqm0{a} librdmacm1t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsymspg2{a} libsz2{a} libtasn1-6{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libtheoradec1{a} libtheoraenc1{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libunistring5{a} libvtk9.3{a} libvtk9.3-qt{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} packmol{a} po-debconf{a} procps{a} proj-data{a} pybuild-plugin-pyproject{a} pymatgen-test-files{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-annotated-types{a} python3-ase{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-bs4{a} python3-bson{a} python3-build{a} python3-certifi{a} python3-cftime{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-dnspython{a} python3-docutils{a} python3-email-validator{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozendict{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-monty{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-nbformat{a} python3-netcdf4{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-openbabel{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-phonopy{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-pybtex{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-spglib{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-vtk9{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python-monty-doc python3-bottleneck python3-bson-ext python3-cryptography python3-cssselect python3-fqdn python3-gdal python3-h2 python3-html5lib python3-httpcore python3-httpx python3-isoduration python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pydot python3-pygraphviz python3-pymatgen python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-torch python3-uritemplate python3-webcolors qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 tcl wget xauth xdg-user-dirs 0 packages upgraded, 385 newly installed, 0 to remove and 0 not upgraded. Need to get 554 MB of archives. After unpacking 2169 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 12.0.0 [28.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-1 [28.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2+b1 [138 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.3+ds-2+b1 [5081 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 79 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 56.0-2 [62.2 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 56.0-2 [357 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.124-1 [8180 B] Get: 116 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.124-1 [38.9 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-1 [22.4 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5+b1 [8882 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-3 [365 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-1 [177 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.1-1 [41.8 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.124-1 [63.8 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b3 [8852 B] Get: 158 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 25.0.0-1 [9620 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 25.0.0-1 [43.9 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 25.0.0-1 [128 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 56.0-2 [70.2 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.304.0-1 [129 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 25.0.0-1 [45.5 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 25.0.0-1 [142 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libglew2.2 amd64 2.2.0-4+b2 [168 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.83.4-1 [1512 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-6 [14.5 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 188 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.12.0-1 [18.1 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 56.0-2 [29.8 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 56.0-2 [44.3 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [557 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.14.0-1 [103 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.14.0-1 [25.3 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.27.1-1 [26.0 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1 [22.6 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.27.1-1 [135 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.1-1+b2 [94.0 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libnetcdf22 amd64 1:4.9.3-1 [517 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libogg0 amd64 1.3.5-3+b2 [23.8 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libopenbabel7 amd64 3.1.1+dfsg-11+b3 [3253 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-1 [204 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.6-3 [651 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 proj-data all 9.5.1-1 [6284 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libproj25 amd64 9.5.1-1 [1420 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.2-1 [10.3 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.2-1 [1068 B] Get: 239 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-4 [1868 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4 [217 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-4 [682 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1 [23.5 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [16.7 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1 [18.4 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [16.2 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4 [3497 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4 [2398 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libsymspg2 amd64 2.5.0-2 [196 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.0.0-2 [14.6 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.0.0-2 [49.3 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.0.0-2 [91.0 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-5 [58.4 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-5 [107 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libvtk9.3 amd64 9.3.0+dfsg1-4 [23.2 MB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-4 [173 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 277 http://deb.debian.org/debian unstable/main amd64 packmol amd64 1:20.15.3-1 [120 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 pymatgen-test-files all 2025.2.18-1 [211 MB] Get: 286 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.2-1 [1048 B] Get: 290 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.2-1 [26.1 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.2-1 [1068 B] Get: 293 http://deb.debian.org/debian unstable/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-4+b1 [17.1 MB] Get: 296 http://deb.debian.org/debian unstable/main amd64 python3-spglib amd64 2.5.0-2 [52.7 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.9-1 [113 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.2-1 [103 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.1-1+b1 [9760 B] Get: 302 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 306 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 309 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-6 [95.1 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1+b1 [25.5 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.1.0-1 [68.7 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.3-2+b1 [1448 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-7+b1 [23.0 MB] Get: 321 http://deb.debian.org/debian unstable/main amd64 python3-ase all 3.23.0-1 [1698 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.13.3-1 [166 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-5 [87.1 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 327 http://deb.debian.org/debian unstable/main amd64 python3-cftime amd64 1.6.4-1+b4 [215 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.0-1 [10.6 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 python3-frozendict all 2.4.6-1 [13.0 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 341 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 342 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-3 [216 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.35.1-2 [23.5 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 348 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 python3-latexcodec all 3.0.0-1 [17.5 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8+b1 [4517 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 python3-pydantic-core amd64 2.27.2-1+b2 [1502 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 python3-pydantic amd64 2.10.6-1 [346 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.67.1-2 [91.1 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1+b1 [135 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 python3-monty all 2025.1.9-1 [45.7 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.0.3-1 [1000 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 python3-netcdf4 amd64 1.7.2-1+b4 [622 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 364 http://deb.debian.org/debian unstable/main amd64 python3-openbabel amd64 3.1.1+dfsg-11+b3 [572 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 python3-palettable all 3.3.3-1 [69.7 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 python3-phonopy amd64 2.35.0-1 [334 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.17.0-1 [16.5 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 python3-pybtex all 0.24.0-4 [74.6 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.1.3-5 [617 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.1.3-5 [468 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 382 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 python3-uncertainties all 3.2.2-1 [54.7 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 python3-vtk9 amd64 9.3.0+dfsg1-4 [7223 kB] Fetched 554 MB in 15s (37.3 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up python-matplotlib-data (3.8.3-7) ... Setting up openssl (3.4.1-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libinchi1.07 (1.07.3+dfsg-1) ... Setting up libdrm-common (2.4.124-1) ... Setting up libevdev2:amd64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up pymatgen-test-files (2025.2.18-1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... 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Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libibverbs1:amd64 (56.0-2) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up ibverbs-providers:amd64 (56.0-2) ... Setting up python3.13 (3.13.2-1) ... Setting up libwacom9:amd64 (2.14.0-1) ... Setting up openssh-client (1:9.9p2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libdrm-intel1:amd64 (2.4.124-1) ... Setting up python3.12-tk (3.12.9-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-1) ... Setting up libtbb12:amd64 (2022.0.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-wheel (0.45.1-1) ... 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Setting up python3-dev (3.13.2-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-cftime (1.6.4-1+b4) ... Setting up python3-ruamel.yaml (0.18.10+ds-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up python3-monty (2025.1.9-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up python3-referencing (0.35.1-2) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-all-dev (3.13.2-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up libglx-mesa0:amd64 (25.0.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up python3-openbabel (3.1.1+dfsg-11+b3) ... Setting up libproj25:amd64 (9.5.1-1) ... Setting up libnetcdf22:amd64 (1:4.9.3-1) ... Setting up python3-h5py-serial (3.13.0-1+b1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-palettable (3.3.3-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5+b1) ... Setting up python3-h5py (3.13.0-1) ... Setting up libglew2.2:amd64 (2.2.0-4+b2) ... Setting up python3-pybtex (0.24.0-4) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-netcdf4 (1.7.2-1+b4) ... Setting up dh-python (6.20250108) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4) ... Setting up python3-nbformat (5.9.1-1) ... Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up openmpi-bin (5.0.7-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-4) ... Setting up mpi-default-bin (1.18) ... Setting up python3-mpi4py (4.0.3-1) ... Setting up python3-vtk9 (9.3.0+dfsg1-4) ... /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' patn = re.compile (" \S") Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-2+b1) ... Setting up python3-matplotlib (3.8.3-7+b1) ... Setting up python3-ase (3.23.0-1) ... Setting up python3-phonopy (2.35.0-1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.1.3-5) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pymatgen-2025.2.18+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymatgen_2025.2.18+dfsg1-4_source.changes dpkg-buildpackage: info: source package pymatgen dpkg-buildpackage: info: source version 2025.2.18+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pymatgen-2025.2.18+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' rm -f pymatgen/optimization/linear_assignment.c pymatgen/optimization/neighbors.c pymatgen/util/coord_cython.c rm -rf pd.json .hypothesis tmp_dir make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/pymatgen copying src/pymatgen/dao.py -> build/lib.linux-x86_64-cpython-313/pymatgen creating build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/vampire_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/enumlib_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/chargemol_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/bader_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/gulp_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/mcsqs_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/critic2_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line creating build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/filters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/materials.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/transmuters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy creating build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/string.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/graph_hashing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/provenance.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/joblib.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/typing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotting.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/num.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/due.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/testing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/coord.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/numba.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/misc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/io_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util creating build/lib.linux-x86_64-cpython-313/pymatgen/apps copying src/pymatgen/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps creating build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_plot.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/get_environment.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_analyze.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_cross_section.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_config.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_potcar.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli creating build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/gruneisen.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/ir_spectra.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/thermal_displacements.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon creating build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/matproj.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/matproj_legacy.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/cod.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/optimade.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext creating build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_chemview.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/plotters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_vtk.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis creating build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/standard_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/transformation_abc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/site_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/advanced_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations creating build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/trajectory.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/lattice.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/units.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/molecular_orbitals.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/bonds.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/tensors.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/composition.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/spectrum.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/surface.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/xcfunc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/ion.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/interface.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/periodic_table.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/libxcfunc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/sites.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/operations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/eos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasiharmonic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo_sensitivity.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/dimensionality.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/adsorption.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/chempot_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/energy_models.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/prototypes.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ewald.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/fragmenter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/surface_analysis.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/interface_reactions.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/local_env.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/nmr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/thermochemistry.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/excitation.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/phase_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/functional_groups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_matcher.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/xps.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cost.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_matcher.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/transition_state.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/graphs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_structure_comparator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/disorder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/wulff.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_dissociation.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_valence.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasirrho.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/pourbaix_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/reaction_calculator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis creating build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/cohp.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap2.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure creating build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/maggroups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/groups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/site_symmetries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/kpath.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/settings.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry creating build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/computed_entries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/exp_entries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/compatibility.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/entry_tools.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/correction_calculator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/mixing_scheme.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries creating build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/openff.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/template.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xyz.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/multiwfn.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/nwchem.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/common.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/wannier90.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/fiesta.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/adf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/cssr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/packmol.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/babel.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/phonopy.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/zeopp.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/atat.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/optimade.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/lmto.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/cif.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/prismatic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/icet.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xcrysden.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/res.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/gaussian.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/ase.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/jarvis.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/pwscf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/shengbte.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io creating build/lib.linux-x86_64-cpython-313/pymatgen/optimization copying src/pymatgen/optimization/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/optimization creating build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/conversion_battery.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/battery_abc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/insertion_battery.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery creating build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/queen.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/hive.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/slme.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/grain.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/gb creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/spectrum.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/strain.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/stress.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/elastic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/jahnteller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/heisenberg.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/zsl.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv copying src/pymatgen/analysis/chemenv/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/spillage.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/xrd.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/tem.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.linux-x86_64-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/parsers.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims creating build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/generators.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/data.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/generic_tags.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jelstep.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jminsettings.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/_output_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructures.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx creating build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb creating build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k creating build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/optics.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/help.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp creating build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat creating build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abitimer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/pseudos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abiobjects.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/variable.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/netcdf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/lobsterenv.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster creating build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting creating build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/base.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/bs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/magnetism.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/py.typed -> build/lib.linux-x86_64-cpython-313/pymatgen copying src/pymatgen/util/plotly_pd_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_chempot_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util creating build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/CsCl.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/He_BCC.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/NaFePO4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/LiFePO4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/K2O2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Pb2TiZrO6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TiO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/BaNiO3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SrTiO3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SiO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Sn.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/VO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li10GeP2S12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/La2CoO4F.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Graphite.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TlBiSe2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/vis/ElementColorSchemes.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/core/libxc_docs.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/reconstructions_archive.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/func_groups.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/bond_lengths.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/periodic_table.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/quad_data.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/costdb_elements.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi_data.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ionic_radii.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/aflow_prototypes.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cn_opt_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bvparam_1991.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/op_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/icsd_bv.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/symmetry/symm_ops.json -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.json -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/entries/exp_compounds.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/calc_compounds.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MPCompatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MITCompatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MP2020Compatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries creating build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/nist_gas_gf.json -> build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/g_els.json -> build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/analysis/solar/am1.5G.dat -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/thermalization.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/minimization.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/md.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/msd.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/vasp/incar_parameters.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE64Base.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE54Base.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/feff/MPXANESSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPELNESSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis running build_ext Compiling src/pymatgen/optimization/linear_assignment.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/linear_assignment.pyx building 'pymatgen.optimization.linear_assignment' extension creating build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/optimization/linear_assignment.c -o build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/linear_assignment.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/linear_assignment.c:1240: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/linear_assignment.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pymatgen/optimization/linear_assignment.cpython-313-x86_64-linux-gnu.so performance hint: src/pymatgen/util/coord_cython.pyx:36:5: Exception check on 'dot_2d' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d' to allow an error code to be returned. performance hint: src/pymatgen/util/coord_cython.pyx:51:5: Exception check on 'dot_2d_mod' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d_mod' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d_mod' to allow an error code to be returned. warning: src/pymatgen/util/coord_cython.pyx:219:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: src/pymatgen/util/coord_cython.pyx:268:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling src/pymatgen/util/coord_cython.pyx because it changed. [1/1] Cythonizing src/pymatgen/util/coord_cython.pyx building 'pymatgen.util.coord_cython' extension creating build/temp.linux-x86_64-cpython-313/src/pymatgen/util x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/util/coord_cython.c -o build/temp.linux-x86_64-cpython-313/src/pymatgen/util/coord_cython.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/util/coord_cython.c:1240: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/pymatgen/util/coord_cython.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so performance hint: src/pymatgen/optimization/neighbors.pyx:525:5: Exception check on 'get_bounds' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_bounds' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_bounds' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:552:5: Exception check on 'get_frac_coords' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_frac_coords' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_frac_coords' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:564:5: Exception check on 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:582:5: Exception check on 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:610:5: Exception check on 'get_max_rep' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_rep' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_rep' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:626:5: Exception check on 'get_reciprocal_lattice' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_reciprocal_lattice' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_reciprocal_lattice' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:641:5: Exception check on 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:675:5: Exception check on 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:702:5: Exception check on 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:726:5: Exception check on 'compute_cube_index' will always require the GIL to be acquired. Possible solutions: 1. Declare 'compute_cube_index' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'compute_cube_index' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:743:5: Exception check on 'three_to_one' will always require the GIL to be acquired. Possible solutions: 1. Declare 'three_to_one' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'three_to_one' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:778:5: Exception check on 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:496:27: Exception check after calling 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:541:19: Exception check after calling 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:561:14: Exception check after calling 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:562:10: Exception check after calling 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:635:23: Exception check after calling 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:655:9: Exception check after calling 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. Compiling src/pymatgen/optimization/neighbors.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/neighbors.pyx building 'pymatgen.optimization.neighbors' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/optimization/neighbors.c -o build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/neighbors.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/neighbors.c:1241: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_pf_8pymatgen_12optimization_9neighbors_find_points_in_spheres': src/pymatgen/optimization/neighbors.c:21919:97: warning: passing argument 3 of '__pyx_f_8pymatgen_12optimization_9neighbors_get_bounds' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 21919 | __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__pyx_v_frac_coords, __pyx_v_max_rep, (&(*((__pyx_t_5numpy_int64_t const *) ( /* dim=0 */ ((char *) (((__pyx_t_5numpy_int64_t const *) __pyx_v_pbc.data) + __pyx_t_30)) )))), __pyx_v_max_bounds, __pyx_v_min_bounds); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 172, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3263:98: note: expected '__pyx_t_5numpy_int64_t *' {aka 'long int *'} but argument is of type 'const __pyx_t_5numpy_int64_t *' {aka 'const long int *'} 3263 | static void __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__Pyx_memviewslice, double *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *); /*proto*/ | ^~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_f_8pymatgen_12optimization_9neighbors_recip_component': src/pymatgen/optimization/neighbors.c:25983:54: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25983 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3272:63: note: expected 'double *' but argument is of type 'const double *' 3272 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25983:158: warning: passing argument 2 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25983 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3272:73: note: expected 'double *' but argument is of type 'const double *' 3272 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25993:66: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_inner' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25993 | __pyx_t_3 = __pyx_f_8pymatgen_12optimization_9neighbors_inner((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a1.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__pyx_t_3 == ((double)-1) && __Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 656, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3271:65: note: expected 'double *' but argument is of type 'const double *' 3271 | static double __pyx_f_8pymatgen_12optimization_9neighbors_inner(double *, double *); /*proto*/ | ^~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/neighbors.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/vampire_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/enumlib_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/chargemol_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/bader_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/gulp_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/mcsqs_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/critic2_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line creating build/bdist.linux-x86_64/wheel/pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/filters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/materials.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/transmuters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy creating build/bdist.linux-x86_64/wheel/pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/string.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/graph_hashing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/provenance.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/joblib.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_pd_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/typing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotting.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/num.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/due.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/testing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/coord.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/CsCl.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/He_BCC.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/NaFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/LiFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/K2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Pb2TiZrO6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/TiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/BaNiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/SrTiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/SiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Si_SiO2_Interface.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li2O.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Sn.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li3V2(PO4)3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/VO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li10GeP2S12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/La2CoO4F.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Si.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Graphite.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/TlBiSe2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/numba.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/misc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_chempot_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_interface_rxn_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/io_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/conversion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/battery_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/insertion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/queen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/hive.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg creating build/bdist.linux-x86_64/wheel/pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_plot.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/get_environment.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/feff_plot_dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_analyze.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/feff_plot_cross_section.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_potcar.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli creating build/bdist.linux-x86_64/wheel/pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/gruneisen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/ir_spectra.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/thermal_displacements.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon creating build/bdist.linux-x86_64/wheel/pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/matproj.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/matproj_legacy.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/cod.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext creating build/bdist.linux-x86_64/wheel/pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/structure_chemview.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/plotters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/ElementColorSchemes.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/structure_vtk.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis creating build/bdist.linux-x86_64/wheel/pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/standard_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/transformation_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/site_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/advanced_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations creating build/bdist.linux-x86_64/wheel/pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/libxc_docs.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/lattice.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/units.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/molecular_orbitals.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/bonds.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/reconstructions_archive.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/func_groups.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/tensors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/composition.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/bond_lengths.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/periodic_table.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/surface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/xcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/quad_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/ion.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/interface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/periodic_table.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/libxcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/sites.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/operations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core creating build/bdist.linux-x86_64/wheel/pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/eos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity/polarization.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/quasiharmonic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/piezo_sensitivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bonds_jmol_ob.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/am1.5G.dat -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/slme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/dimensionality.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/adsorption.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chempot_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/energy_models.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/gb copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/gb/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/gb copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/gb/grain.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/gb creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ewald.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/fragmenter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/surface_analysis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/costdb_elements.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/substitutor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data/lambda.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/cn_opt_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interface_reactions.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ionic_radii.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/local_env.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/strain.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/stress.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/elastic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/jahnteller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/heisenberg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/zsl.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/nmr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/aflow_prototypes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/thermochemistry.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/excitation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/phase_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/functional_groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/math_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/func_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xps.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/cost.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/molecule_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/transition_state.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/graphs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/vesta_cutoffs.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/molecule_structure_comparator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bvparam_1991.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/disorder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological/spillage.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/xrd.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/tem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/neutron.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/wulff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bond_dissociation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bond_valence.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/quasirrho.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/piezo.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/hhi_data.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/pourbaix_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/reaction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/hhi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/op_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/icsd_bv.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/boltztrap.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/cohp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/boltztrap2.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure creating build/bdist.linux-x86_64/wheel/pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/maggroups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_ops.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_ops.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/site_symmetries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/kpath.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/settings.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry creating build/bdist.linux-x86_64/wheel/pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/computed_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/exp_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MPCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/compatibility.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/entry_tools.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/correction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MITCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/mixing_scheme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/exp_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries creating build/bdist.linux-x86_64/wheel/pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/data/nist_gas_gf.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/data/g_els.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/calc_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MP2020Compatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/py.typed -> build/bdist.linux-x86_64/wheel/./pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/openff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/template.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xyz.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/aims copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/parsers.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims creating build/bdist.linux-x86_64/wheel/pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets/base.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets/bs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/sets/magnetism.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims copying build/lib.linux-x86_64-cpython-313/pymatgen/io/aims/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims creating build/bdist.linux-x86_64/wheel/pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/multiwfn.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/nwchem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/common.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/generators.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/CoeffsDataType.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/data.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/thermalization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/minimization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/md.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/msd.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps creating build/bdist.linux-x86_64/wheel/pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/generic_tags.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/joutstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jelstep.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jminsettings.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/_output_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/joutstructures.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/wannier90.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/fiesta.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/adf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cssr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/packmol.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/babel.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/phonopy.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/zeopp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/atat.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lmto.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cif.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/prismatic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb creating build/bdist.linux-x86_64/wheel/pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/icet.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xcrysden.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/PBE64Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/VASPIncarBase.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/PBE54Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/optics.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/incar_parameters.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MVLGWSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vdW_parameters.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MITRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/help.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/res.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/gaussian.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/ase.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jarvis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwscf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/shengbte.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat creating build/bdist.linux-x86_64/wheel/pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPXANESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPEXAFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPELNESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPEXELFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff creating build/bdist.linux-x86_64/wheel/pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/abitimer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/pseudos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/abiobjects.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/variable.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/netcdf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobsterenv.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster creating build/bdist.linux-x86_64/wheel/pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting creating build/bdist.linux-x86_64/wheel/pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/optimization/linear_assignment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/optimization/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/dao.py -> build/bdist.linux-x86_64/wheel/./pymatgen running install_egg_info running egg_info creating src/pymatgen.egg-info writing src/pymatgen.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:162: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to src/pymatgen.egg-info/dependency_links.txt writing entry points to src/pymatgen.egg-info/entry_points.txt writing requirements to src/pymatgen.egg-info/requires.txt writing top-level names to src/pymatgen.egg-info/top_level.txt writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' reading manifest file 'src/pymatgen.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' Copying src/pymatgen.egg-info to build/bdist.linux-x86_64/wheel/./pymatgen-2025.2.18.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pymatgen-2025.2.18.dist-info/WHEEL creating '/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/.tmp-ob4g3gcb/pymatgen-2025.2.18-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pymatgen/dao.py' adding 'pymatgen/py.typed' adding 'pymatgen/alchemy/__init__.py' adding 'pymatgen/alchemy/filters.py' adding 'pymatgen/alchemy/materials.py' adding 'pymatgen/alchemy/transmuters.py' adding 'pymatgen/analysis/adsorption.py' adding 'pymatgen/analysis/aflow_prototypes.json' adding 'pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv' adding 'pymatgen/analysis/bond_dissociation.py' adding 'pymatgen/analysis/bond_valence.py' adding 'pymatgen/analysis/bonds_jmol_ob.yaml' adding 'pymatgen/analysis/bvparam_1991.yaml' adding 'pymatgen/analysis/chempot_diagram.py' adding 'pymatgen/analysis/cn_opt_params.yaml' adding 'pymatgen/analysis/cost.py' adding 'pymatgen/analysis/costdb_elements.csv' adding 'pymatgen/analysis/dimensionality.py' adding 'pymatgen/analysis/disorder.py' adding 'pymatgen/analysis/energy_models.py' adding 'pymatgen/analysis/eos.py' adding 'pymatgen/analysis/ewald.py' adding 'pymatgen/analysis/excitation.py' adding 'pymatgen/analysis/fragmenter.py' adding 'pymatgen/analysis/functional_groups.py' adding 'pymatgen/analysis/graphs.py' adding 'pymatgen/analysis/hhi.py' adding 'pymatgen/analysis/hhi_data.csv' adding 'pymatgen/analysis/icsd_bv.yaml' adding 'pymatgen/analysis/interface_reactions.py' adding 'pymatgen/analysis/ionic_radii.json' adding 'pymatgen/analysis/local_env.py' adding 'pymatgen/analysis/molecule_matcher.py' adding 'pymatgen/analysis/molecule_structure_comparator.py' adding 'pymatgen/analysis/nmr.py' adding 'pymatgen/analysis/op_params.yaml' adding 'pymatgen/analysis/phase_diagram.py' adding 'pymatgen/analysis/piezo.py' adding 'pymatgen/analysis/piezo_sensitivity.py' adding 'pymatgen/analysis/pourbaix_diagram.py' adding 'pymatgen/analysis/prototypes.py' adding 'pymatgen/analysis/quasiharmonic.py' adding 'pymatgen/analysis/quasirrho.py' adding 'pymatgen/analysis/reaction_calculator.py' adding 'pymatgen/analysis/structure_analyzer.py' adding 'pymatgen/analysis/structure_matcher.py' adding 'pymatgen/analysis/surface_analysis.py' adding 'pymatgen/analysis/thermochemistry.py' adding 'pymatgen/analysis/transition_state.py' adding 'pymatgen/analysis/vesta_cutoffs.yaml' adding 'pymatgen/analysis/wulff.py' adding 'pymatgen/analysis/xps.py' adding 'pymatgen/analysis/chemenv/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/connected_components.py' adding 'pymatgen/analysis/chemenv/connectivity/connectivity_finder.py' adding 'pymatgen/analysis/chemenv/connectivity/environment_nodes.py' adding 'pymatgen/analysis/chemenv/connectivity/structure_connectivity.py' adding 'pymatgen/analysis/chemenv/coordination_environments/__init__.py' adding 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'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt' adding 'pymatgen/analysis/chemenv/utils/__init__.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_config.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_errors.py' adding 'pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py' adding 'pymatgen/analysis/chemenv/utils/defs_utils.py' adding 'pymatgen/analysis/chemenv/utils/func_utils.py' adding 'pymatgen/analysis/chemenv/utils/graph_utils.py' adding 'pymatgen/analysis/chemenv/utils/math_utils.py' adding 'pymatgen/analysis/chemenv/utils/scripts_utils.py' adding 'pymatgen/analysis/diffraction/__init__.py' adding 'pymatgen/analysis/diffraction/atomic_scattering_params.json' adding 'pymatgen/analysis/diffraction/core.py' adding 'pymatgen/analysis/diffraction/neutron.py' adding 'pymatgen/analysis/diffraction/neutron_scattering_length.json' adding 'pymatgen/analysis/diffraction/tem.py' adding 'pymatgen/analysis/diffraction/xrd.py' adding 'pymatgen/analysis/elasticity/__init__.py' adding 'pymatgen/analysis/elasticity/elastic.py' adding 'pymatgen/analysis/elasticity/strain.py' adding 'pymatgen/analysis/elasticity/stress.py' adding 'pymatgen/analysis/ferroelectricity/__init__.py' adding 'pymatgen/analysis/ferroelectricity/polarization.py' adding 'pymatgen/analysis/gb/__init__.py' adding 'pymatgen/analysis/gb/grain.py' adding 'pymatgen/analysis/interfaces/__init__.py' adding 'pymatgen/analysis/interfaces/coherent_interfaces.py' adding 'pymatgen/analysis/interfaces/substrate_analyzer.py' adding 'pymatgen/analysis/interfaces/zsl.py' adding 'pymatgen/analysis/magnetism/__init__.py' adding 'pymatgen/analysis/magnetism/analyzer.py' adding 'pymatgen/analysis/magnetism/default_magmoms.yaml' adding 'pymatgen/analysis/magnetism/heisenberg.py' adding 'pymatgen/analysis/magnetism/jahnteller.py' adding 'pymatgen/analysis/solar/__init__.py' adding 'pymatgen/analysis/solar/am1.5G.dat' adding 'pymatgen/analysis/solar/slme.py' adding 'pymatgen/analysis/structure_prediction/DLS_bond_params.yaml' adding 'pymatgen/analysis/structure_prediction/__init__.py' adding 'pymatgen/analysis/structure_prediction/dopant_predictor.py' adding 'pymatgen/analysis/structure_prediction/substitution_probability.py' adding 'pymatgen/analysis/structure_prediction/substitutor.py' adding 'pymatgen/analysis/structure_prediction/volume_predictor.py' adding 'pymatgen/analysis/structure_prediction/data/lambda.json' adding 'pymatgen/analysis/structure_prediction/data/pair_correlation.json' adding 'pymatgen/analysis/topological/__init__.py' adding 'pymatgen/analysis/topological/spillage.py' adding 'pymatgen/analysis/xas/__init__.py' adding 'pymatgen/analysis/xas/spectrum.py' adding 'pymatgen/apps/__init__.py' adding 'pymatgen/apps/battery/__init__.py' adding 'pymatgen/apps/battery/analyzer.py' adding 'pymatgen/apps/battery/battery_abc.py' adding 'pymatgen/apps/battery/conversion_battery.py' adding 'pymatgen/apps/battery/insertion_battery.py' adding 'pymatgen/apps/battery/plotter.py' adding 'pymatgen/apps/borg/__init__.py' adding 'pymatgen/apps/borg/hive.py' adding 'pymatgen/apps/borg/queen.py' adding 'pymatgen/cli/__init__.py' adding 'pymatgen/cli/feff_plot_cross_section.py' adding 'pymatgen/cli/feff_plot_dos.py' adding 'pymatgen/cli/get_environment.py' adding 'pymatgen/cli/pmg.py' adding 'pymatgen/cli/pmg_analyze.py' adding 'pymatgen/cli/pmg_config.py' adding 'pymatgen/cli/pmg_plot.py' adding 'pymatgen/cli/pmg_potcar.py' adding 'pymatgen/cli/pmg_structure.py' adding 'pymatgen/command_line/__init__.py' adding 'pymatgen/command_line/bader_caller.py' adding 'pymatgen/command_line/chargemol_caller.py' adding 'pymatgen/command_line/critic2_caller.py' adding 'pymatgen/command_line/enumlib_caller.py' adding 'pymatgen/command_line/gulp_caller.py' adding 'pymatgen/command_line/mcsqs_caller.py' adding 'pymatgen/command_line/vampire_caller.py' adding 'pymatgen/core/__init__.py' adding 'pymatgen/core/bond_lengths.json' adding 'pymatgen/core/bonds.py' adding 'pymatgen/core/composition.py' adding 'pymatgen/core/func_groups.json' adding 'pymatgen/core/interface.py' adding 'pymatgen/core/ion.py' adding 'pymatgen/core/lattice.py' adding 'pymatgen/core/libxc_docs.json' adding 'pymatgen/core/libxcfunc.py' adding 'pymatgen/core/molecular_orbitals.py' adding 'pymatgen/core/operations.py' adding 'pymatgen/core/periodic_table.json' adding 'pymatgen/core/periodic_table.py' adding 'pymatgen/core/quad_data.json' adding 'pymatgen/core/reconstructions_archive.json' adding 'pymatgen/core/sites.py' adding 'pymatgen/core/spectrum.py' adding 'pymatgen/core/structure.py' adding 'pymatgen/core/surface.py' adding 'pymatgen/core/tensors.py' adding 'pymatgen/core/trajectory.py' adding 'pymatgen/core/units.py' adding 'pymatgen/core/xcfunc.py' adding 'pymatgen/electronic_structure/__init__.py' adding 'pymatgen/electronic_structure/bandstructure.py' adding 'pymatgen/electronic_structure/boltztrap.py' adding 'pymatgen/electronic_structure/boltztrap2.py' adding 'pymatgen/electronic_structure/cohp.py' adding 'pymatgen/electronic_structure/core.py' adding 'pymatgen/electronic_structure/dos.py' adding 'pymatgen/electronic_structure/plotter.py' adding 'pymatgen/entries/MITCompatibility.yaml' adding 'pymatgen/entries/MP2020Compatibility.yaml' adding 'pymatgen/entries/MPCompatibility.yaml' adding 'pymatgen/entries/__init__.py' adding 'pymatgen/entries/calc_compounds.json.gz' adding 'pymatgen/entries/compatibility.py' adding 'pymatgen/entries/computed_entries.py' adding 'pymatgen/entries/correction_calculator.py' adding 'pymatgen/entries/entry_tools.py' adding 'pymatgen/entries/exp_compounds.json.gz' adding 'pymatgen/entries/exp_entries.py' adding 'pymatgen/entries/mixing_scheme.py' adding 'pymatgen/entries/data/g_els.json' adding 'pymatgen/entries/data/nist_gas_gf.json' adding 'pymatgen/ext/cod.py' adding 'pymatgen/ext/matproj.py' adding 'pymatgen/ext/matproj_legacy.py' adding 'pymatgen/ext/optimade.py' adding 'pymatgen/io/adf.py' adding 'pymatgen/io/ase.py' adding 'pymatgen/io/atat.py' adding 'pymatgen/io/babel.py' adding 'pymatgen/io/cif.py' adding 'pymatgen/io/common.py' adding 'pymatgen/io/core.py' adding 'pymatgen/io/cssr.py' adding 'pymatgen/io/fiesta.py' adding 'pymatgen/io/gaussian.py' adding 'pymatgen/io/icet.py' adding 'pymatgen/io/jarvis.py' adding 'pymatgen/io/lmto.py' adding 'pymatgen/io/multiwfn.py' adding 'pymatgen/io/nwchem.py' adding 'pymatgen/io/openff.py' adding 'pymatgen/io/optimade.py' adding 'pymatgen/io/packmol.py' adding 'pymatgen/io/phonopy.py' adding 'pymatgen/io/prismatic.py' adding 'pymatgen/io/pwscf.py' adding 'pymatgen/io/res.py' adding 'pymatgen/io/shengbte.py' adding 'pymatgen/io/template.py' adding 'pymatgen/io/wannier90.py' adding 'pymatgen/io/xcrysden.py' adding 'pymatgen/io/xr.py' adding 'pymatgen/io/xyz.py' adding 'pymatgen/io/zeopp.py' adding 'pymatgen/io/abinit/__init__.py' adding 'pymatgen/io/abinit/abiobjects.py' adding 'pymatgen/io/abinit/abitimer.py' adding 'pymatgen/io/abinit/inputs.py' adding 'pymatgen/io/abinit/netcdf.py' adding 'pymatgen/io/abinit/pseudos.py' adding 'pymatgen/io/abinit/variable.py' adding 'pymatgen/io/aims/__init__.py' adding 'pymatgen/io/aims/inputs.py' adding 'pymatgen/io/aims/outputs.py' adding 'pymatgen/io/aims/parsers.py' adding 'pymatgen/io/aims/sets/__init__.py' adding 'pymatgen/io/aims/sets/base.py' adding 'pymatgen/io/aims/sets/bs.py' adding 'pymatgen/io/aims/sets/core.py' adding 'pymatgen/io/aims/sets/magnetism.py' adding 'pymatgen/io/cp2k/__init__.py' adding 'pymatgen/io/cp2k/inputs.py' adding 'pymatgen/io/cp2k/outputs.py' adding 'pymatgen/io/cp2k/sets.py' adding 'pymatgen/io/cp2k/utils.py' adding 'pymatgen/io/exciting/__init__.py' adding 'pymatgen/io/exciting/inputs.py' adding 'pymatgen/io/feff/MPELNESSet.yaml' adding 'pymatgen/io/feff/MPEXAFSSet.yaml' adding 'pymatgen/io/feff/MPEXELFSSet.yaml' adding 'pymatgen/io/feff/MPXANESSet.yaml' adding 'pymatgen/io/feff/__init__.py' adding 'pymatgen/io/feff/inputs.py' adding 'pymatgen/io/feff/outputs.py' adding 'pymatgen/io/feff/sets.py' adding 'pymatgen/io/jdftx/__init__.py' adding 'pymatgen/io/jdftx/_output_utils.py' adding 'pymatgen/io/jdftx/generic_tags.py' adding 'pymatgen/io/jdftx/inputs.py' adding 'pymatgen/io/jdftx/jdftxinfile_master_format.py' adding 'pymatgen/io/jdftx/jdftxinfile_ref_options.py' adding 'pymatgen/io/jdftx/jdftxoutfileslice.py' adding 'pymatgen/io/jdftx/jelstep.py' adding 'pymatgen/io/jdftx/jminsettings.py' adding 'pymatgen/io/jdftx/joutstructure.py' adding 'pymatgen/io/jdftx/joutstructures.py' adding 'pymatgen/io/jdftx/outputs.py' adding 'pymatgen/io/lammps/CoeffsDataType.yaml' adding 'pymatgen/io/lammps/__init__.py' adding 'pymatgen/io/lammps/data.py' adding 'pymatgen/io/lammps/generators.py' adding 'pymatgen/io/lammps/inputs.py' adding 'pymatgen/io/lammps/outputs.py' adding 'pymatgen/io/lammps/sets.py' adding 'pymatgen/io/lammps/utils.py' adding 'pymatgen/io/lammps/templates/md.template' adding 'pymatgen/io/lammps/templates/minimization.template' adding 'pymatgen/io/lammps/templates/msd.template' adding 'pymatgen/io/lammps/templates/thermalization.template' adding 'pymatgen/io/lobster/__init__.py' adding 'pymatgen/io/lobster/inputs.py' adding 'pymatgen/io/lobster/lobsterenv.py' adding 'pymatgen/io/lobster/outputs.py' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml' adding 'pymatgen/io/pwmat/__init__.py' adding 'pymatgen/io/pwmat/inputs.py' adding 'pymatgen/io/pwmat/outputs.py' adding 'pymatgen/io/qchem/__init__.py' adding 'pymatgen/io/qchem/inputs.py' adding 'pymatgen/io/qchem/outputs.py' adding 'pymatgen/io/qchem/sets.py' adding 'pymatgen/io/qchem/utils.py' adding 'pymatgen/io/vasp/MITRelaxSet.yaml' adding 'pymatgen/io/vasp/MP24RelaxSet.yaml' adding 'pymatgen/io/vasp/MPAbsorptionSet.yaml' adding 'pymatgen/io/vasp/MPHSERelaxSet.yaml' adding 'pymatgen/io/vasp/MPRelaxSet.yaml' adding 'pymatgen/io/vasp/MPSCANRelaxSet.yaml' adding 'pymatgen/io/vasp/MVLGWSet.yaml' adding 'pymatgen/io/vasp/MVLRelax52Set.yaml' adding 'pymatgen/io/vasp/MatPESStaticSet.yaml' adding 'pymatgen/io/vasp/PBE54Base.yaml' adding 'pymatgen/io/vasp/PBE64Base.yaml' adding 'pymatgen/io/vasp/VASPIncarBase.yaml' adding 'pymatgen/io/vasp/__init__.py' adding 'pymatgen/io/vasp/help.py' adding 'pymatgen/io/vasp/incar_parameters.json' adding 'pymatgen/io/vasp/inputs.py' adding 'pymatgen/io/vasp/optics.py' adding 'pymatgen/io/vasp/outputs.py' adding 'pymatgen/io/vasp/potcar-summary-stats.json.bz2' adding 'pymatgen/io/vasp/sets.py' adding 'pymatgen/io/vasp/vasp_potcar_file_hashes.json' adding 'pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json' adding 'pymatgen/io/vasp/vdW_parameters.yaml' adding 'pymatgen/io/xtb/__init__.py' adding 'pymatgen/io/xtb/inputs.py' adding 'pymatgen/io/xtb/outputs.py' adding 'pymatgen/optimization/__init__.py' adding 'pymatgen/optimization/linear_assignment.cpython-313-x86_64-linux-gnu.so' adding 'pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so' adding 'pymatgen/phonon/__init__.py' adding 'pymatgen/phonon/bandstructure.py' adding 'pymatgen/phonon/dos.py' adding 'pymatgen/phonon/gruneisen.py' adding 'pymatgen/phonon/ir_spectra.py' adding 'pymatgen/phonon/plotter.py' adding 'pymatgen/phonon/thermal_displacements.py' adding 'pymatgen/symmetry/__init__.py' adding 'pymatgen/symmetry/analyzer.py' adding 'pymatgen/symmetry/bandstructure.py' adding 'pymatgen/symmetry/groups.py' adding 'pymatgen/symmetry/kpath.py' adding 'pymatgen/symmetry/maggroups.py' adding 'pymatgen/symmetry/settings.py' adding 'pymatgen/symmetry/site_symmetries.py' adding 'pymatgen/symmetry/structure.py' adding 'pymatgen/symmetry/symm_data.json' adding 'pymatgen/symmetry/symm_data.yaml' adding 'pymatgen/symmetry/symm_data_magnetic.sqlite' adding 'pymatgen/symmetry/symm_ops.json' adding 'pymatgen/symmetry/symm_ops.yaml' adding 'pymatgen/transformations/__init__.py' adding 'pymatgen/transformations/advanced_transformations.py' adding 'pymatgen/transformations/site_transformations.py' adding 'pymatgen/transformations/standard_transformations.py' adding 'pymatgen/transformations/transformation_abc.py' adding 'pymatgen/util/__init__.py' adding 'pymatgen/util/coord.py' adding 'pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so' adding 'pymatgen/util/due.py' adding 'pymatgen/util/graph_hashing.py' adding 'pymatgen/util/io_utils.py' adding 'pymatgen/util/joblib.py' adding 'pymatgen/util/misc.py' adding 'pymatgen/util/num.py' adding 'pymatgen/util/numba.py' adding 'pymatgen/util/plotly_chempot_layouts.json' adding 'pymatgen/util/plotly_interface_rxn_layouts.json' adding 'pymatgen/util/plotly_pd_layouts.json' adding 'pymatgen/util/plotting.py' adding 'pymatgen/util/provenance.py' adding 'pymatgen/util/string.py' adding 'pymatgen/util/testing.py' adding 'pymatgen/util/typing.py' adding 'pymatgen/util/structures/BaNiO3.json' adding 'pymatgen/util/structures/CsCl.json' adding 'pymatgen/util/structures/Graphite.json' adding 'pymatgen/util/structures/He_BCC.json' adding 'pymatgen/util/structures/K2O2.json' adding 'pymatgen/util/structures/La2CoO4F.json' adding 'pymatgen/util/structures/Li10GeP2S12.json' adding 'pymatgen/util/structures/Li2O.json' adding 'pymatgen/util/structures/Li2O2.json' adding 'pymatgen/util/structures/Li3V2(PO4)3.json' adding 'pymatgen/util/structures/LiFePO4.json' adding 'pymatgen/util/structures/NaFePO4.json' adding 'pymatgen/util/structures/Pb2TiZrO6.json' adding 'pymatgen/util/structures/Si.json' adding 'pymatgen/util/structures/SiO2.json' adding 'pymatgen/util/structures/Si_SiO2_Interface.json' adding 'pymatgen/util/structures/Sn.json' adding 'pymatgen/util/structures/SrTiO3.json' adding 'pymatgen/util/structures/TiO2.json' adding 'pymatgen/util/structures/TlBiSe2.json' adding 'pymatgen/util/structures/VO2.json' adding 'pymatgen/vis/ElementColorSchemes.yaml' adding 'pymatgen/vis/__init__.py' adding 'pymatgen/vis/plotters.py' adding 'pymatgen/vis/structure_chemview.py' adding 'pymatgen/vis/structure_vtk.py' adding 'pymatgen-2025.2.18.dist-info/LICENSE' adding 'pymatgen-2025.2.18.dist-info/METADATA' adding 'pymatgen-2025.2.18.dist-info/WHEEL' adding 'pymatgen-2025.2.18.dist-info/entry_points.txt' adding 'pymatgen-2025.2.18.dist-info/top_level.txt' adding 'pymatgen-2025.2.18.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pymatgen-2025.2.18-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' PYTHONPATH=/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build \ sphinx-build docs/apidoc build/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry 'assets' does not exist WARNING: favicon file 'favicon.ico' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 50 source files that are out of date updating environment: [new config] 50 added, 0 changed, 0 removed reading sources... [ 2%] index The 道 of Pymatgen 1. Great code enables great materials science. 2. Comprehensive tests ensure robustness. 3. Clear documentation leads to more usage. 4. More usage improves code quality (and increases citations). 5. Even complex scientific ideas can be broken down into simple interfaces. 6. Deep (Hulk-level) understanding is often necessary to develop the right interface design. 7. Slow and accurate is better than fast and wrong. 8. But efficiency matters for core classes. 9. Code entropy always increases in a closed system. 10. Constant refactoring is the hallmark of an open platform. --- First Coder reading sources... [ 4%] modules reading sources... [ 6%] pymatgen reading sources... [ 8%] pymatgen.alchemy reading sources... [ 10%] pymatgen.analysis Matplotlib created a temporary cache directory at /tmp/matplotlib-uo3f370h because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 12%] pymatgen.analysis.chemenv reading sources... [ 14%] pymatgen.analysis.chemenv.connectivity reading sources... [ 16%] pymatgen.analysis.chemenv.coordination_environments reading sources... [ 18%] pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files reading sources... [ 20%] pymatgen.analysis.chemenv.utils reading sources... [ 22%] pymatgen.analysis.diffraction reading sources... [ 24%] pymatgen.analysis.elasticity reading sources... [ 26%] pymatgen.analysis.ferroelectricity reading sources... [ 28%] pymatgen.analysis.gb reading sources... [ 30%] pymatgen.analysis.interfaces reading sources... [ 32%] pymatgen.analysis.magnetism reading sources... [ 34%] pymatgen.analysis.solar reading sources... [ 36%] pymatgen.analysis.structure_prediction reading sources... [ 38%] pymatgen.analysis.topological reading sources... [ 40%] pymatgen.analysis.xas reading sources... [ 42%] pymatgen.apps reading sources... [ 44%] pymatgen.apps.battery reading sources... [ 46%] pymatgen.apps.borg reading sources... [ 48%] pymatgen.cli reading sources... [ 50%] pymatgen.command_line reading sources... [ 52%] pymatgen.core reading sources... [ 54%] pymatgen.electronic_structure reading sources... [ 56%] pymatgen.entries reading sources... [ 58%] pymatgen.ext reading sources... [ 60%] pymatgen.io /usr/lib/python3.13/importlib/__init__.py:88: UserWarning: To use the pymatgen.io.openff module install openff-toolkit and openff-unitswith `conda install -c conda-forge openff-toolkit openff-units`. return _bootstrap._gcd_import(name[level:], package, level) reading sources... [ 62%] pymatgen.io.abinit reading sources... [ 64%] pymatgen.io.aims reading sources... [ 66%] pymatgen.io.aims.sets reading sources... [ 68%] pymatgen.io.cp2k reading sources... [ 70%] pymatgen.io.exciting reading sources... [ 72%] pymatgen.io.feff reading sources... [ 74%] pymatgen.io.jdftx reading sources... [ 76%] pymatgen.io.lammps reading sources... [ 78%] pymatgen.io.lobster reading sources... [ 80%] pymatgen.io.pwmat reading sources... [ 82%] pymatgen.io.qchem reading sources... [ 84%] pymatgen.io.vasp reading sources... [ 86%] pymatgen.io.xtb reading sources... [ 88%] pymatgen.optimization reading sources... [ 90%] pymatgen.phonon reading sources... [ 92%] pymatgen.symmetry reading sources... [ 94%] pymatgen.transformations reading sources... [ 96%] pymatgen.util reading sources... [ 98%] pymatgen.util.testing reading sources... [100%] pymatgen.vis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.rst:4: WARNING: duplicate object description of pymatgen, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/dao.py:docstring of pymatgen.dao:1: WARNING: duplicate object description of pymatgen.dao, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:18: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/dimensionality.py:docstring of pymatgen.analysis.dimensionality.get_dimensionality_cheon:29: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.from_local_env_strategy:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.insert_node:15: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interface_reactions.py:docstring of pymatgen.analysis.interface_reactions.InterfacialReactivity.labels:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:28: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:34: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:39: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CutOffDictNN:17: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:9: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:20: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:25: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:36: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:39: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:40: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:46: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:54: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_all_voronoi_polyhedra:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_voronoi_polyhedra:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/nmr.py:docstring of pymatgen.analysis.nmr.ElectricFieldGradient.coupling_constant:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram.num2str:6: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDEntry.energy:1: WARNING: duplicate object description of pymatgen.analysis.phase_diagram.PDEntry.energy, other instance in pymatgen.analysis, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:27: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:5: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.order_phase_diagram:17: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_analyzer.py:docstring of pymatgen.analysis.structure_analyzer.VoronoiAnalyzer:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher.get_transformation:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:6: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:28: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/wulff.py:docstring of pymatgen.analysis.wulff.WulffShape.shape_factor:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:8: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:12: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:26: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:29: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:33: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:10: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator.cell_intensity:1: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic.generate_pseudo:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization.get_same_branch_polarization_data:35: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:11: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:26: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:15: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:18: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:22: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:13: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/vampire_caller.py:docstring of pymatgen.command_line.vampire_caller.VampireCaller:74: ERROR: Unknown directive type "todo". .. todo:: * Create input files in a temp folder that gets cleaned up after run terminates [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.obtain_all_bond_lengths:14: ERROR: Unknown directive type "todo". .. todo:: it's better to avoid using float as dict keys. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:8: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:16: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:76: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:80: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:100: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition.to_data_dict:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/ion.py:docstring of pymatgen.core.ion.Ion.to_reduced_dict:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.A:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.A, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.X:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.X, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.Z:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.Z, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.oxi_state:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.oxi_state, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Element:218: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Element:229: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase:218: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase:229: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.electronic_structure, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.full_electronic_structure:18: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.full_electronic_structure:18: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:16: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:20: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.IStructure.matches:9: WARNING: Inline strong start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.PeriodicNeighbor:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:8: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:29: ERROR: Unknown directive type "todo". .. todo:: - Right now there is no way to specify what atom is being added. Use basis sets in the future? [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:64: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:66: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:74: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.Slab.get_surface_sites:20: ERROR: Unknown directive type "todo". .. todo:: Is there a way to determine site equivalence between sites in a slab and bulk system? This would allow us get the coordination number of a specific site for multi-elemental systems or systems with more than one inequivalent site. This will allow us to use this for compound systems. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.from_ase:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.from_ase:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.to_ase:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.to_ase:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units.unitized:14: ERROR: Unexpected indentation. [docutils] WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.name: is not a callable object WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.type: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/libxcfunc.py:docstring of pymatgen.core.libxcfunc.LibxcFunc.all_kinds:1: ERROR: Unknown target name: "xc". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/xcfunc.py:docstring of pymatgen.core.xcfunc.XcFunc:29: ERROR: Unknown target name: "xc". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_cbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_vbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:20: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.get_extreme:24: ERROR: Unexpected indentation. [docutils] WARNING: autodoc: failed to import module 'boltztrap2' from module 'pymatgen.electronic_structure'; the following exception was raised: BoltzTraP2 has to be installed and working [autodoc.import_object] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:71: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:73: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:74: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.get_integrated_cohp_in_energy_range:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:8: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:20: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:24: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_center:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_kurtosis:5: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_skewness:5: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.BSPlotterProjected.get_projected_plots_dots:9: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.DosPlotter:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/entries/correction_calculator.py:docstring of pymatgen.entries.correction_calculator.CorrectionCalculator.compute_corrections:8: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/entries/mixing_scheme.py:docstring of pymatgen.entries.mixing_scheme.MaterialsProjectDFTMixingScheme.get_mixing_state_data:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData:31: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:16: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:57: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:63: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:64: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.get_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_spectre_plot:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.read_scan:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.read_scan, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.save_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.save_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.to_input:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.to_input, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/icet.py:docstring of pymatgen.io.icet.IcetSQS.enumerate_sqs_structures:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lmto.py:docstring of pymatgen.io.lmto.LMTOCopl:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.map_atoms_cps:16: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.match_atom_cp:18: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol:5: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:15: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_gruneisen_ph_bs_symm_line:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_ph_bs_symm_line:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/pwscf.py:docstring of pymatgen.io.pwscf.PWInput:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.data:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.data, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ik:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ik, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.is_noncollinear:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.is_noncollinear, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.nbnd:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.nbnd, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ng:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ng, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:10: WARNING: Title underline too short. Zeo++ Installation Steps: ======================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:19: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cif.py:docstring of pymatgen.io.cif.CifBlock:9: ERROR: Unknown target name: "data". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.structure_from_abivars:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser:10: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser.walk:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ShiftMode:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:30: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:37: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] WARNING: Failed to get a method signature for pymatgen.io.abinit.netcdf.EtsfReader.chemical_symbols: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_partial_waves: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.projector_functions: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.pseudo_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.root: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.Pseudo.md5: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.gth_header:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.tm_header:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:8: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:23: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:30: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:31: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:38: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:40: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:47: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:48: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.pseudos:1: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.structure:1: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset:35: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:4: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.num_valence_electrons:3: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.edges:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.edges, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.elf_type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.elf_type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.filename:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.filename, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.format:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.format, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.kpoint:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.kpoint, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.origin:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.origin, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.points:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.points, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.spin_state:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.spin_state, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.data:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.data, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.label:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.label, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/parsers.py:docstring of pymatgen.io.aims.parsers.AimsOutChunk.lines:1: WARNING: duplicate object description of pymatgen.io.aims.parsers.AimsOutChunk.lines, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.method:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.method, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/magnetism.py:docstring of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.element:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.element, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.filename:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.filename, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.name:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.name, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.potential:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.potential, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.version:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.version, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.admm:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.admm, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.cc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.cc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.contracted:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.contracted, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.core:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.core, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.diffuse:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.diffuse, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.lri:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.lri, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.molopt:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.molopt, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.pc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.pc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.polarization:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.polarization, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.sr:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.sr, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.valence:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.valence, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:19: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.n_elecs:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.n_elecs, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.r_loc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.r_loc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.radii:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.radii, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.KpointSet:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Kpoint_Set:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:17: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/outputs.py:docstring of pymatgen.io.cp2k.outputs.parse_pdos:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.CellOptSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.get_basis_and_potential:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.print_v_hartree:3: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridCellOptSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridRelaxSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridStaticSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.RelaxSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.StaticSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:10: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/exciting/inputs.py:docstring of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz:1: WARNING: duplicate object description of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz, other instance in pymatgen.io.exciting, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header:6: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header.from_str:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/sets.py:docstring of pymatgen.io.feff.sets.FEFFDictSet:26: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.sort_structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.sort_structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxinfile_master_format.py:docstring of pymatgen.io.jdftx.jdftxinfile_master_format:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxinfile_master_format.py:docstring of pymatgen.io.jdftx.jdftxinfile_master_format:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:373: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:374: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:383: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:383: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:385: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:387: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:388: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:394: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:394: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:396: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:398: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:405: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:407: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.a:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.a, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements_int:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements_int, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.b:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.b, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.c:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.c, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.efermi:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.efermi, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.egap:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.egap, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emax:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emax, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fftgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fftgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_eigstats:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_eigstats, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_parsable_pseudo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_parsable_pseudo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_solvation:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_solvation, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_bgw:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_bgw, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_gc:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_gc, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_metal:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_metal, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_electronic:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_electronic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_ionic:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_ionic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jstrucs:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jstrucs, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.kgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.kgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nat:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nat, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nbands:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nbands, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nspin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nspin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pp_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pp_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.prefix:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.prefix, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pwcut:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pwcut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.rhocut:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.rhocut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.spintype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.spintype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_radius:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_radius, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.xc_func:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.xc_func, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.subspacerotationadjust:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.subspacerotationadjust, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.iter_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.iter_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.subspacerotationadjust:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.subspacerotationadjust, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure:9: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.ecomponents:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.ecomponents, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.emin_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.emin_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.line_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.line_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures:111: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures:162: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.charges:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.charges, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.ecomponents:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.ecomponents, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.emin_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.emin_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.magnetic_moments:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.magnetic_moments, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.out_slice_start_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.out_slice_start_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:434: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:485: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:508: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.a:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.a, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements_int:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements_int, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.b:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.b, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.c:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.c, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.efermi:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.efermi, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.egap:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.egap, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.emax:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.emax, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.emin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.emin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.fftgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.fftgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.has_solvation:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.has_solvation, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_gc:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_gc, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_metal:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_metal, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_electronic:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_electronic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_ionic:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_ionic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jstrucs:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jstrucs, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.kgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.kgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nat:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nat, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nbands:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nbands, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nspin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nspin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.pp_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.pp_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.prefix:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.prefix, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.pwcut:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.pwcut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.rhocut:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.rhocut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.spintype:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.spintype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.trajectory:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.trajectory, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_radius:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_radius, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.xc_func:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.xc_func, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.bandProjections:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.bandProjections, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.calc_dir:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.calc_dir, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.eigenvals:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.eigenvals, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.orb_label_list:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.orb_label_list, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.outfile:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.outfile, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.paths:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.paths, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.store_vars:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.store_vars, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:57: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.LammpsData.set_charge_atom_type:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:29: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.template:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.template, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:9: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:17: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:7: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:14: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:23: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:6: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:22: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:23: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:28: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:25: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:35: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData:6: ERROR: Unknown target name: "a-za-z0-9". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors.get_info_cohps_to_neighbors:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:22: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:26: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:27: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:37: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:42: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.completedos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.completedos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.energies:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.itdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.itdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.pdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.pdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Icohplist:31: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:18: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/pwmat/outputs.py:docstring of pymatgen.io.pwmat.outputs.DosSpin.get_partial_dos:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:64: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:66: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:67: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:74: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:79: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:81: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:85: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:86: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:97: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:99: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:101: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:137: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:13: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:68: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:97: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:119: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:127: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:135: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:68: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:97: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:119: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:127: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:135: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:81: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:101: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:108: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:115: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:116: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:123: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:130: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:132: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:137: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:138: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:140: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:146: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:148: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:153: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:154: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.PESScanSet:88: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:87: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:107: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:108: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:119: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:126: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:128: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:133: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:134: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:141: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:148: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:150: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:156: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:158: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:164: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:166: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:171: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:172: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:173: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:183: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:186: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:188: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:190: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:191: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:76: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:90: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:97: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:99: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:104: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:105: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:112: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:119: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:121: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:126: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:127: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:129: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:135: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:137: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:143: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:144: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:152: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:155: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:157: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:159: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:160: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.TransitionStateSet:77: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.lattice_velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.lattice_velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.selective_dynamics, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.get_electron_configuration:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar_hash_based:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:7: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:12: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:27: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.VaspInput.write_input:18: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:5: CRITICAL: Unexpected section title. Fermi contact (isotropic) hyperfine coupling parameter (MHz) ------------------------------------------------------------- [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:7: CRITICAL: Unexpected section title. ion A_pw A_1PS A_1AE A_1c A_tot ------------------------------------------------------------- [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_freq_dielectric:6: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_real, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nbands:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nbands, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nkpoints:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nkpoints, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nspin:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nspin, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_real, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:17: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:30: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] WARNING: Failed to get a method signature for pymatgen.phonon.dos.PhononDos.ind_zero_freq: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:1: ERROR: Unknown interpreted text role "cite". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:5: ERROR: Unknown interpreted text role "cite". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/plotter.py:docstring of pymatgen.phonon.plotter.PhononDosPlotter:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.compute_directionality_quality_criterion:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/gruneisen.py:docstring of pymatgen.phonon.gruneisen.GruneisenParameter.average_gruneisen:1: ERROR: Unknown target name: "materialia". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:16: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:17: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:22: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:23: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/groups.py:docstring of pymatgen.symmetry.groups.PointGroup.symmetry_ops:1: WARNING: duplicate object description of pymatgen.symmetry.groups.PointGroup.symmetry_ops, other instance in pymatgen.symmetry, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:53: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:54: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:35: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:45: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:68: WARNING: Duplicate explicit target name: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:69: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.description:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.description, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.name:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.name, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.url:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.url, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/string.py:docstring of pymatgen.util.string.str_delimited:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst:21: ERROR: Unknown target name: "int". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst:21: ERROR: Unknown target name: "float". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Unknown target name: "2". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing:1: WARNING: duplicate object description of pymatgen.util.testing, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.TEST_STRUCTURES:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.TEST_STRUCTURES, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.assert_msonable:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.assert_msonable, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.assert_str_content_equal:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.assert_str_content_equal, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.get_structure:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.get_structure, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.serialize_with_pickle:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.serialize_with_pickle, other instance in pymatgen.util, use :no-index: for one of them looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/modules.rst: WARNING: document isn't included in any toctree /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.testing.rst: WARNING: document isn't included in any toctree /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.alchemy.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.alchemy /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.analysis.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.analysis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.apps.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.apps /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.cli.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.cli /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.command_line.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.command_line /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.core.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.core /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.electronic_structure.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.electronic_structure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.entries.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.entries /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.ext.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.ext /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.io /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.optimization.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.optimization /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.phonon.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.phonon /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.symmetry.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.symmetry /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.transformations.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.transformations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.util /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.vis.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.vis done preparing documents... WARNING: unsupported theme option 'display_version' given done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 2%] index writing output... [ 4%] modules writing output... [ 6%] pymatgen writing output... [ 8%] pymatgen.alchemy writing output... [ 10%] pymatgen.analysis writing output... [ 12%] pymatgen.analysis.chemenv writing output... [ 14%] pymatgen.analysis.chemenv.connectivity writing output... [ 16%] pymatgen.analysis.chemenv.coordination_environments writing output... [ 18%] pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files writing output... [ 20%] pymatgen.analysis.chemenv.utils writing output... [ 22%] pymatgen.analysis.diffraction writing output... [ 24%] pymatgen.analysis.elasticity writing output... [ 26%] pymatgen.analysis.ferroelectricity writing output... [ 28%] pymatgen.analysis.gb writing output... [ 30%] pymatgen.analysis.interfaces writing output... [ 32%] pymatgen.analysis.magnetism writing output... [ 34%] pymatgen.analysis.solar writing output... [ 36%] pymatgen.analysis.structure_prediction writing output... [ 38%] pymatgen.analysis.topological writing output... [ 40%] pymatgen.analysis.xas writing output... [ 42%] pymatgen.apps writing output... [ 44%] pymatgen.apps.battery writing output... [ 46%] pymatgen.apps.borg writing output... [ 48%] pymatgen.cli writing output... [ 50%] pymatgen.command_line writing output... [ 52%] pymatgen.core writing output... [ 54%] pymatgen.electronic_structure writing output... [ 56%] pymatgen.entries writing output... [ 58%] pymatgen.ext writing output... [ 60%] pymatgen.io writing output... [ 62%] pymatgen.io.abinit writing output... [ 64%] pymatgen.io.aims writing output... [ 66%] pymatgen.io.aims.sets writing output... [ 68%] pymatgen.io.cp2k writing output... [ 70%] pymatgen.io.exciting writing output... [ 72%] pymatgen.io.feff writing output... [ 74%] pymatgen.io.jdftx writing output... [ 76%] pymatgen.io.lammps writing output... [ 78%] pymatgen.io.lobster writing output... [ 80%] pymatgen.io.pwmat writing output... [ 82%] pymatgen.io.qchem writing output... [ 84%] pymatgen.io.vasp writing output... [ 86%] pymatgen.io.xtb writing output... [ 88%] pymatgen.optimization writing output... [ 90%] pymatgen.phonon writing output... [ 92%] pymatgen.symmetry writing output... [ 94%] pymatgen.transformations writing output... [ 96%] pymatgen.util writing output... [ 98%] pymatgen.util.testing writing output... [100%] pymatgen.vis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:16: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_site_orbital_dos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.lobster.rst:29: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.KpointOptProps:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.KpointOptProps.kpoints:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun:129: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun.get_band_structure:1: WARNING: more than one target found for cross-reference 'BandStructure': pymatgen.electronic_structure.bandstructure.BandStructure, pymatgen.io.cp2k.inputs.BandStructure [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.VaspInputSet.prev_kpoints:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 941 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' SKIP_TESTS=""; \ list_initialised=0; \ for t in test_matproj TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_CifWriter test_read_write test_init test_get_site_symmetries BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ for py in `py3versions -sv`; do \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python$py; \ cp -a $pybuilddir $testdir; \ cp -a tests $testdir; \ PMG_TEST_FILES_DIR=/usr/share/doc/pymatgen-test-files/examples/files \ PYTHONPATH=$testdir PATH=$pybuilddir/../scripts:$PATH \ python$py -m pytest -v --import-mode=prepend --color=no -k "${SKIP_TESTS}" $testdir; \ done skipping tests: not ( test_matproj or TestGenKpt or TestHighSymmetryPoint or test_from_multi_jobs_file or test_from_string or test_read_molecule or test_read_nbo or test_read_negative or test_read_plots or test_read_write_nbo7 or test_all or test_custom_smd_write or test_sets or test_CifWriter or test_read_write or test_init or test_get_site_symmetries or BSDOSPlotterTest or test_cdft_dc_parsing or test_get_structure_by_id or test_babel_PC_with_RO_depth_0_vs_depth_10 or test_fit ) ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/pymatgen-2025.2.18+dfsg1 configfile: pyproject.toml plugins: typeguard-4.4.2 collected 3114 items / 291 deselected / 8 skipped / 2823 selected .pybuild/test_python3.13/tests/alchemy/test_filters.py ....... 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[100%] =============================== warnings summary =============================== .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:333: RuntimeWarning: divide by zero encountered in scalar divide return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx) .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:351: RuntimeWarning: divide by zero encountered in scalar divide aa * np.power(xx - 1.0, 2) / xx**2.0, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 96974 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 8 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 16 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 8 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 468 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:364: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 48487 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 2 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 8 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 4 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 234 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5280 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 105 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 3 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 360 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 1776 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 15 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 215 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:287: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 14329 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 363 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 31 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 1272 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 7104 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 10 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 63 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 10977 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1788 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 36 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 2 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 6 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1369 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1793 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 51 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1374 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1910 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 108 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 17 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 16 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 18 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1629 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 52 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 40 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 162 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:92: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1 warning /usr/lib/python3/dist-packages/numpy/_core/_methods.py:52: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1174 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 54 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:110: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py:228: UserWarning: Extra strain states in strain-stress pairs are neglected in independent strain fitting .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 12 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:482: UserWarning: Tensor is not symmetric, information may be lost in Voigt conversion. .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 30 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 18 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:760: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:761: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 99 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 57 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 12 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 12 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 255 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:773: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 58 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 22 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:815: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:814: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 58 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 22 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:818: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:817: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 56 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 8 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 2 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:842: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 124 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 60 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 13 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 338 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2451: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 33 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 19 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 85 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:851: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 36 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 8 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:629: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:633: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:634: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:635: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 3456 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 768 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:636: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:637: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 3474 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 2775 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:327: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 36 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 8 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:665: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 18 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 4 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:666: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 11 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:584: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:742: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 2 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1 warning /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:1895: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:63: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 12 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:70: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:77: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:89: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:235: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:237: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 78 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 82 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:1021: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 78 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 82 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:992: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_graphs.py: 17 warnings .pybuild/test_python3.13/tests/command_line/test_critic2_caller.py: 5 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/command_line/critic2_caller.py:490: DeprecationWarning: Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future. .pybuild/test_python3.13/tests/analysis/test_interface_reactions.py: 24 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/analysis/test_interface_reactions.py:368: DeprecationWarning: Arrays of 2-dimensional vectors are deprecated. Use arrays of 3-dimensional vectors instead. (deprecated in NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:91: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:104: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:112: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_principal_axis_system .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestElectricFieldGradient::test_principal_axis_system /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:850: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 120 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:385: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 590 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:387: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 120 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:388: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 60 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:396: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1040 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:393: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 12390 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:568: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 2520 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:571: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1260 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:581: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 21840 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:578: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 826 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:437: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 168 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:439: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 84 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:449: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1456 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:446: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 88 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:126: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 88 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:145: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 84 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:243: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 98 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:244: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/analysis/test_pourbaix_diagram.py: 42 warnings /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=2374980) is multi-threaded, use of fork() may lead to deadlocks in the child. .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:243: RuntimeWarning: overflow encountered in exp .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:244: RuntimeWarning: overflow encountered in exp .pybuild/test_python3.13/tests/core/test_structure.py::TestStructure::test_rotate_sites /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/structure.py:4699: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/core/test_tensors.py: 18 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:207: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee /usr/lib/python3/dist-packages/numpy/_core/_methods.py:44: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_round /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:376: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_round /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensorCollection::test_list_based_functions /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:409: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_get_scaled /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:1003: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_properties .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:524: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_refine_rotation /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:556: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) .pybuild/test_python3.13/tests/electronic_structure/test_bandstructure.py::TestLobsterBandStructureSymmLine::test_proj_bandstructure_plot /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/electronic_structure/plotter.py:1119: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. .pybuild/test_python3.13/tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/electronic_structure/dos.py:527: RuntimeWarning: divide by zero encountered in divide .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=2374980) is multi-threaded, use of fork() may lead to deadlocks in the child. .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_get_str .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_get_str /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. .pybuild/test_python3.13/tests/io/test_cif.py::TestCifIO::test_cif_writer_write_file /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/io/cif.py:1767: FutureWarning: We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_ionic /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:366: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. Electronic convergence reached: True. Ionic convergence reached: False. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_unconverged /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:373: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.unconverged.xml.gz is an unconverged VASP run. Electronic convergence reached: False. Ionic convergence reached: True. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:159: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.hse06.xml.gz is an unconverged VASP run. Electronic convergence reached: False. Ionic convergence reached: True. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:165: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. Electronic convergence reached: True. Ionic convergence reached: False. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:238: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:243: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:248: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:256: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestWavecar::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/io/vasp/outputs.py:5008: RuntimeWarning: invalid value encountered in cast .pybuild/test_python3.13/tests/phonon/test_plotter.py::TestPhononBSPlotter::test_proj_plot /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/phonon/plotter.py:514: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. .pybuild/test_python3.13/tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap .pybuild/test_python3.13/tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap .pybuild/test_python3.13/tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap .pybuild/test_python3.13/tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/util/plotting.py:350: MatplotlibDeprecationWarning: Getting the array from a PolyQuadMesh will return the full array in the future (uncompressed). To get this behavior now set the PolyQuadMesh with a 2D array .set_array(data2d). -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 30 durations ============================= 2599.78s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_rotor_search_rrs 336.00s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_rotor_search_wrs 59.42s call .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 48.83s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_rotor_search_srs 43.76s call .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 36.62s call .pybuild/test_python3.13/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 29.54s call .pybuild/test_python3.13/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 27.22s call .pybuild/test_python3.13/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 24.80s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 22.58s call .pybuild/test_python3.13/tests/analysis/topological/test_spillage.py::TestSolar::test_spillage_from_vasprun 20.45s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_symmetrization 20.04s call .pybuild/test_python3.13/tests/io/vasp/test_optics.py::TestVasprun::test_optics 19.59s call .pybuild/test_python3.13/tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 18.93s call .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 18.63s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 18.43s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 18.30s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 18.06s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 18.01s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 17.67s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 17.65s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 17.62s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 17.62s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 17.61s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 17.58s call .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 17.01s call .pybuild/test_python3.13/tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 16.85s call .pybuild/test_python3.13/tests/analysis/test_transition_state.py::TestNEBAnalysis::test_run 12.14s call .pybuild/test_python3.13/tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 11.99s setup .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata 11.85s call .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype =========================== short test summary info ============================ SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_cod.py:25: www.crystallography.net is down SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_matproj.py:44: MP API is down SKIPPED [1] .pybuild/test_python3.13/tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_zeopp.py:20: zeo not installed SKIPPED [1] .pybuild/test_python3.13/tests/performance/test_import_time.py:32: ref time only comparable in CI runner SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpath_hin.py:11: seekpath not installed SKIPPED [1] .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py:264: enumlib not present SKIPPED [1] 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This is also the case in a PR. SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:1906: chgnet is not built against NumPy 2.0 SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2015: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2026: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2035: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2668: could not import 'tblite': No module named 'tblite' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2676: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 SKIPPED [1] .pybuild/test_python3.13/tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily SKIPPED [1] .pybuild/test_python3.13/tests/core/test_xcfunc.py:56: TODO: SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:254: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:221: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:241: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:169: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:199: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:232: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:101: No FDINT SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:123: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:203: No x_trans. 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SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:40: MP OPTIMADE is down. SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:93: OPTIMADE providers list is down. SKIPPED [1] .pybuild/test_python3.13/tests/io/exciting/test_inputs.py:137: inconsistent data SKIPPED [1] .pybuild/test_python3.13/tests/io/test_cif.py:322: non-free PF*.cif test files are not available SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:12: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:20: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:22: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:31: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:37: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_inputs.py:1717: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpaths.py:21: No seek path present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:97: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:158: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:188: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:207: enum_lib not present. 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SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:874: hiphive not present SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_site_transformations.py:214: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:238: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:255: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:273: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:279: enum_lib not present. = 2678 passed, 153 skipped, 291 deselected, 296936 warnings in 4485.62s (1:14:45) = ..tot conformations = 3 ..tot confs tested = 3 ..below energy threshold = 3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pymatgen-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:339: Ignoring complex environment marker: boltztrap2>=24.9.4; platform_system != "Windows" and extra == "optional" I: dh_python3 pydist:339: Ignoring complex environment marker: tblite[ase]>=0.3.0; (platform_system == "Linux" and python_version < "3.12") and extra == "tblite" debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pymatgen-doc' in '../python-pymatgen-doc_2025.2.18+dfsg1-4_all.deb'. dpkg-deb: building package 'python3-pymatgen' in '../python3-pymatgen_2025.2.18+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-pymatgen-dbgsym' in '../python3-pymatgen-dbgsym_2025.2.18+dfsg1-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pymatgen_2025.2.18+dfsg1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../pymatgen_2025.2.18+dfsg1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pymatgen-2025.2.18+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2332249 and its subdirectories I: Current time: Thu Apr 2 10:30:22 -12 2026 I: pbuilder-time-stamp: 1775169022