I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 23 09:47:55 -12 2026 I: pbuilder-time-stamp: 1771883275 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dendropy_4.6.1-2.dsc] I: copying [./python-dendropy_4.6.1.orig.tar.xz] I: copying [./python-dendropy_4.6.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-dendropy_4.6.1-2.dsc: unsupported subcommand dpkg-source: info: extracting python-dendropy in python-dendropy-4.6.1 dpkg-source: info: unpacking python-dendropy_4.6.1.orig.tar.xz dpkg-source: info: unpacking python-dendropy_4.6.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_try_running_non-existing_testsuite.patch dpkg-source: info: applying remove-pkg-resources-usage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3594633/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0b1893ca16054743aacb0a38b6843b55' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3594633' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l5E3U2Ps/pbuilderrc_6WzU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l5E3U2Ps/b1 --logfile b1/build.log python-dendropy_4.6.1-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3594633/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 34.7 MB of archives. After unpacking 136 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 63 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Fetched 34.7 MB in 0s (76.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20185 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Preparing to unpack .../01-libpython3.12-minimal_3.12.8-5_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-5) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../02-python3.12-minimal_3.12.8-5_amd64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-dendropy-4.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dendropy_4.6.1-2_source.changes dpkg-buildpackage: info: source package python-dendropy dpkg-buildpackage: info: source version 4.6.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config I: pybuild base:311: python3.13 setup.py config -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel running egg_info creating src/DendroPy.egg-info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing top-level names to src/DendroPy.egg-info/top_level.txt writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.12 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.12 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.12 changing mode of build/scripts-3.12/sumtrees.py from 644 to 755 changing mode of build/scripts-3.12/sumlabels.py from 644 to 755 changing mode of build/scripts-3.12/dendropy-format from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.13 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.13 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.13 changing mode of build/scripts-3.13/sumtrees.py from 644 to 755 changing mode of build/scripts-3.13/sumlabels.py from 644 to 755 changing mode of build/scripts-3.13/dendropy-format from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__pycache__/popgensim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__pycache__/treesim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__pycache__/charsim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/continuous.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/reconcile.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/parsimony.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/birthdeath.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/discrete.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/coalescent.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__pycache__/treeshape.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__pycache__ creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/popgenstat.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/combinatorics.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/probability.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/treescore.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/treesum.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/treemeasure.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/phylogeneticdistance.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__pycache__/treecompare.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/__pycache__/seqgen.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/messaging.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/filesys.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/processio.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/deprecate.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/bitprocessing.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/error.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/urlio.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/textprocessing.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/terminal.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/metavar.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/bibtex.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/container.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__pycache__/constants.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__pycache__ creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/fastareader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/phylipwriter.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexusprocessing.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/xmlprocessing.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/ioservice.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/newickyielder.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/phylipreader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexusyielder.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexmlreader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/newick.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/fastawriter.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexusreader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/newickreader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexmlwriter.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/tokenizer.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexmlyielder.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/nexuswriter.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/newickwriter.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__pycache__/multiphylipreader.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/continuous.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/reconcile.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/popgenstat.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/popgensim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/treesim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/treecalc.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/coalescent.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/treesum.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/seqmodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/treemanip.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/seqsim.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__pycache__/treesplit.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_tree.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_bipartition.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_node.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_edge.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/treecollectionmodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/basemodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/charstatemodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/taxonmodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/charmatrixmodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__pycache__/datasetmodel.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/discrete.py to discrete.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/continuous.py to continuous.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/probability.py to probability.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/ape.py to ape.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/rspr.py to rspr.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/ete.py to ete.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/muscle.py to muscle.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/gbif.py to gbif.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/paup.py to paup.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/raxml.py to raxml.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/itol.py to itol.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/entrez.py to entrez.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/rstats.py to rstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/genbank.py to genbank.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/biopython.py to biopython.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/debug.py to debug.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/error.py to error.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/container.py to container.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/messaging.py to messaging.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/terminal.py to terminal.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/urlio.py to urlio.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/filesys.py to filesys.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/metavar.py to metavar.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/constants.py to constants.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/processio.py to processio.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/probability.py to probability.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newick.py to newick.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_node.py to _node.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_tree.py to _tree.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_bipartition.py to _bipartition.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_edge.py to _edge.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__main__.py to __main__.cpython-312.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/DendroPy-4.6.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/sumtrees.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/dendropy-format -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/sumlabels.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumtrees.py to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumlabels.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.simulate - dendropy.model - dendropy.calculate - dendropy.interop - dendropy.utility - dendropy.mathlib - dendropy.dataio - dendropy.legacy - dendropy.datamodel - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/__pycache__/charsim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/__pycache__/treesim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/__pycache__/popgensim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/treeshape.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/parsimony.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/discrete.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/reconcile.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/continuous.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/coalescent.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/model/__pycache__/birthdeath.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__pycache__ creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/phylogeneticdistance.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/treecompare.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/treemeasure.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/probability.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/statistics.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/treesum.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/combinatorics.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/treescore.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/__pycache__/popgenstat.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/__pycache__/seqgen.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/libexec/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/libexec/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/libexec/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/filesys.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/container.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/processio.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/textprocessing.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/terminal.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/metavar.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/bibtex.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/error.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/urlio.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/bitprocessing.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/deprecate.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/utility/__pycache__/messaging.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__pycache__ creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/newickreader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/tokenizer.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/newickwriter.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/newickyielder.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/xmlprocessing.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/newick.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexusprocessing.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexmlyielder.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexmlwriter.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/fastareader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/ioservice.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/phylipreader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexuswriter.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/fastawriter.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexusyielder.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexmlreader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/nexusreader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/multiphylipreader.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/__pycache__/phylipwriter.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/treecalc.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/treemanip.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/seqsim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/seqmodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/reconcile.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/treesplit.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/treesim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/continuous.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/treesum.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/popgensim.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/coalescent.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/__pycache__/popgenstat.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_node.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_tree.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_bipartition.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treemodel/__pycache__/_edge.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/basemodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/charstatemodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/charmatrixmodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/treecollectionmodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/datasetmodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/__pycache__/taxonmodel.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/__pycache__ copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.13_dendropy/build/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/discrete.py to discrete.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/continuous.py to continuous.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/probability.py to probability.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/ape.py to ape.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/rspr.py to rspr.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/ete.py to ete.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/muscle.py to muscle.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/gbif.py to gbif.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/paup.py to paup.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/raxml.py to raxml.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/itol.py to itol.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/entrez.py to entrez.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/rstats.py to rstats.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/genbank.py to genbank.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/interop/biopython.py to biopython.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/debug.py to debug.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/error.py to error.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/container.py to container.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/messaging.py to messaging.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/terminal.py to terminal.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/urlio.py to urlio.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/filesys.py to filesys.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/metavar.py to metavar.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/processio.py to processio.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/utility/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/probability.py to probability.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/newick.py to newick.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/_node.py to _node.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/_tree.py to _tree.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/_bipartition.py to _bipartition.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treemodel/_edge.py to _edge.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-313.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/dendropy/__main__.py to __main__.cpython-313.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.13/dist-packages/DendroPy-4.6.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/sumtrees.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.13/dendropy-format -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.13/sumlabels.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumtrees.py to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumlabels.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-dendropy-4.6.1' dh_install mkdir -p debian/sumtrees/usr/bin mv debian/python3-dendropy/usr/bin/sumtrees.py debian/sumtrees/usr/bin/sumtrees cp applications/dendropy-format/dendropy-format debian/sumtrees/usr/bin/dendropy-format rm -rf debian/python3-dendropy/usr/bin make[1]: Leaving directory '/build/reproducible-path/python-dendropy-4.6.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/sumtrees/usr/bin/dendropy-format dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dendropy: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package sumtrees: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dendropy' in '../python3-dendropy_4.6.1-2_all.deb'. dpkg-deb: building package 'sumtrees' in '../sumtrees_4.6.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-dendropy_4.6.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-dendropy_4.6.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3594633 and its subdirectories I: Current time: Mon Feb 23 09:48:55 -12 2026 I: pbuilder-time-stamp: 1771883335