I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 00:47:22 -12 2025 I: pbuilder-time-stamp: 1740314842 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1012268/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='70d266f3c8ed4ada8e6d90eac29aa952' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1012268' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9xGT8mjR/pbuilderrc_xm7A --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9xGT8mjR/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1012268/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 42.9 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libedlib1 amd64 1.2.7-6+b2 [18.1 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libedlib-dev amd64 1.2.7-6+b2 [23.3 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 42.9 MB in 4s (12.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../39-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.12.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../43-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../44-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../45-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../46-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_3.31.5-2_amd64.deb ... Unpacking cmake (3.31.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../54-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../55-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package googletest. Preparing to unpack .../60-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package libbiosoup-dev. Preparing to unpack .../61-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../62-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libbioparser-dev. Preparing to unpack .../63-libbioparser-dev_3.1.0-1_all.deb ... Unpacking libbioparser-dev (3.1.0-1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../64-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... Selecting previously unselected package libcereal-dev. Preparing to unpack .../65-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libedlib1:amd64. Preparing to unpack .../66-libedlib1_1.2.7-6+b2_amd64.deb ... Unpacking libedlib1:amd64 (1.2.7-6+b2) ... Selecting previously unselected package libedlib-dev:amd64. Preparing to unpack .../67-libedlib-dev_1.2.7-6+b2_amd64.deb ... Unpacking libedlib-dev:amd64 (1.2.7-6+b2) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../68-libgtest-dev_1.16.0-1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.16.0-1) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../69-libspoa7.0.0_4.1.4-2+b1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.4-2+b1) ... Selecting previously unselected package libspoa-dev:amd64. Preparing to unpack .../70-libspoa-dev_4.1.4-2+b1_amd64.deb ... Unpacking libspoa-dev:amd64 (4.1.4-2+b1) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../71-libthread-pool-dev_4.0.0-2_amd64.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. Preparing to unpack .../72-rampler_2.1.1-1_amd64.deb ... Unpacking rampler (2.1.1-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up rampler (2.1.1-1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:amd64 (4.1.4-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libedlib1:amd64 (1.2.7-6+b2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libedlib-dev:amd64 (1.2.7-6+b2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libspoa-dev:amd64 (4.1.4-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o [ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (2 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (7 ms) [----------] 5 tests from RaconInitializeTest (19 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000784 s [racon::Polisher::initialize] loaded sequences 0.044822 s [racon::Polisher::initialize] loaded overlaps 0.000450 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.029527 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.042018 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.056540 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.073327 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.093477 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.104019 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.135330 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.153288 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.164625 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.177230 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.193260 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.204295 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.232055 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.238634 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.262423 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.274730 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.296751 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.317312 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.319604 s [racon::Polisher::initialize] aligning overlaps [====================] 0.331175 s [racon::Polisher::initialize] transformed data into windows 0.002665 s [racon::Polisher::polish] generating consensus [=> ] 0.033777 s [racon::Polisher::polish] generating consensus [==> ] 0.062257 s [racon::Polisher::polish] generating consensus [===> ] 0.083433 s [racon::Polisher::polish] generating consensus [====> ] 0.106283 s [racon::Polisher::polish] generating consensus [=====> ] 0.129899 s [racon::Polisher::polish] generating consensus [======> ] 0.143061 s [racon::Polisher::polish] generating consensus [=======> ] 0.152697 s [racon::Polisher::polish] generating consensus [========> ] 0.170215 s [racon::Polisher::polish] generating consensus [=========> ] 0.191807 s [racon::Polisher::polish] generating consensus [==========> ] 0.216690 s [racon::Polisher::polish] generating consensus [===========> ] 0.285269 s [racon::Polisher::polish] generating consensus [============> ] 0.319203 s [racon::Polisher::polish] generating consensus [=============> ] 0.367081 s [racon::Polisher::polish] generating consensus [==============> ] 0.402891 s [racon::Polisher::polish] generating consensus [===============> ] 0.437289 s [racon::Polisher::polish] generating consensus [================> ] 0.475589 s [racon::Polisher::polish] generating consensus [=================> ] 0.503939 s [racon::Polisher::polish] generating consensus [==================> ] 0.531038 s [racon::Polisher::polish] generating consensus [===================>] 0.559070 s [racon::Polisher::polish] generating consensus [====================] 0.646231 s [racon::Polisher::] total = 1.044500 s [ OK ] RaconPolishingTest.ConsensusWithQualities (1064 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000849 s [racon::Polisher::initialize] loaded sequences 0.018285 s [racon::Polisher::initialize] loaded overlaps 0.000448 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.023564 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.036218 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.053137 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.065487 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.080551 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.094821 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.128567 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.147639 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.183692 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.194630 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.210006 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.223399 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.237933 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.245317 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.255308 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.263824 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.271048 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.283495 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.300747 s [racon::Polisher::initialize] aligning overlaps [====================] 0.307151 s [racon::Polisher::initialize] transformed data into windows 0.000681 s [racon::Polisher::polish] generating consensus [=> ] 0.032790 s [racon::Polisher::polish] generating consensus [==> ] 0.064387 s [racon::Polisher::polish] generating consensus [===> ] 0.099172 s [racon::Polisher::polish] generating consensus [====> ] 0.118870 s [racon::Polisher::polish] generating consensus [=====> ] 0.134641 s [racon::Polisher::polish] generating consensus [======> ] 0.150656 s [racon::Polisher::polish] generating consensus [=======> ] 0.169416 s [racon::Polisher::polish] generating consensus [========> ] 0.188068 s [racon::Polisher::polish] generating consensus [=========> ] 0.206244 s [racon::Polisher::polish] generating consensus [==========> ] 0.237079 s [racon::Polisher::polish] generating consensus [===========> ] 0.288323 s [racon::Polisher::polish] generating consensus [============> ] 0.337756 s [racon::Polisher::polish] generating consensus [=============> ] 0.395002 s [racon::Polisher::polish] generating consensus [==============> ] 0.454331 s [racon::Polisher::polish] generating consensus [===============> ] 0.501522 s [racon::Polisher::polish] generating consensus [================> ] 0.557023 s [racon::Polisher::polish] generating consensus [=================> ] 0.607447 s [racon::Polisher::polish] generating consensus [==================> ] 0.634482 s [racon::Polisher::polish] generating consensus [===================>] 0.671213 s [racon::Polisher::polish] generating consensus [====================] 0.867530 s [racon::Polisher::] total = 1.228703 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1248 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000902 s [racon::Polisher::initialize] loaded sequences 0.049493 s [racon::Polisher::initialize] loaded overlaps 0.029154 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.014950 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.015157 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.015347 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.015501 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.015652 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.015803 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.015949 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.016106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.016284 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.016434 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.016597 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.017108 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.017338 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.017487 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.017869 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.018111 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.018300 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.018452 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.018733 s [racon::Polisher::initialize] aligning overlaps [====================] 0.018939 s [racon::Polisher::initialize] transformed data into windows 0.003412 s [racon::Polisher::polish] generating consensus [=> ] 0.051657 s [racon::Polisher::polish] generating consensus [==> ] 0.088760 s [racon::Polisher::polish] generating consensus [===> ] 0.128862 s [racon::Polisher::polish] generating consensus [====> ] 0.160777 s [racon::Polisher::polish] generating consensus [=====> ] 0.170314 s [racon::Polisher::polish] generating consensus [======> ] 0.189417 s [racon::Polisher::polish] generating consensus [=======> ] 0.209514 s [racon::Polisher::polish] generating consensus [========> ] 0.232210 s [racon::Polisher::polish] generating consensus [=========> ] 0.249894 s [racon::Polisher::polish] generating consensus [==========> ] 0.296734 s [racon::Polisher::polish] generating consensus [===========> ] 0.336843 s [racon::Polisher::polish] generating consensus [============> ] 0.396681 s [racon::Polisher::polish] generating consensus [=============> ] 0.460696 s [racon::Polisher::polish] generating consensus [==============> ] 0.560285 s [racon::Polisher::polish] generating consensus [===============> ] 0.632759 s [racon::Polisher::polish] generating consensus [================> ] 0.657739 s [racon::Polisher::polish] generating consensus [=================> ] 0.684701 s [racon::Polisher::polish] generating consensus [==================> ] 0.684762 s [racon::Polisher::polish] generating consensus [===================>] 0.703593 s [racon::Polisher::polish] generating consensus [====================] 0.766243 s [racon::Polisher::] total = 0.889125 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (918 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000672 s [racon::Polisher::initialize] loaded sequences 0.018847 s [racon::Polisher::initialize] loaded overlaps 0.030593 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.007103 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007145 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.007433 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.007446 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.007510 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.007650 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.007822 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.008780 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.008905 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.008920 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.008934 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008949 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008959 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008970 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008980 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008991 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.009000 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.009010 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009022 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009032 s [racon::Polisher::initialize] transformed data into windows 0.000789 s [racon::Polisher::polish] generating consensus [=> ] 0.053881 s [racon::Polisher::polish] generating consensus [==> ] 0.101958 s [racon::Polisher::polish] generating consensus [===> ] 0.145744 s [racon::Polisher::polish] generating consensus [====> ] 0.193962 s [racon::Polisher::polish] generating consensus [=====> ] 0.222017 s [racon::Polisher::polish] generating consensus [======> ] 0.241795 s [racon::Polisher::polish] generating consensus [=======> ] 0.260687 s [racon::Polisher::polish] generating consensus [========> ] 0.289691 s [racon::Polisher::polish] generating consensus [=========> ] 0.309793 s [racon::Polisher::polish] generating consensus [==========> ] 0.345721 s [racon::Polisher::polish] generating consensus [===========> ] 0.385712 s [racon::Polisher::polish] generating consensus [============> ] 0.449739 s [racon::Polisher::polish] generating consensus [=============> ] 0.525768 s [racon::Polisher::polish] generating consensus [==============> ] 0.628192 s [racon::Polisher::polish] generating consensus [===============> ] 0.741729 s [racon::Polisher::polish] generating consensus [================> ] 0.803599 s [racon::Polisher::polish] generating consensus [=================> ] 0.862720 s [racon::Polisher::polish] generating consensus [==================> ] 0.890977 s [racon::Polisher::polish] generating consensus [===================>] 0.917558 s [racon::Polisher::polish] generating consensus [====================] 0.950256 s [racon::Polisher::] total = 1.021625 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1032 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000637 s [racon::Polisher::initialize] loaded sequences 0.043523 s [racon::Polisher::initialize] loaded overlaps 0.000527 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.036705 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.048235 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.061590 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.073556 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.085569 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.096138 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.133572 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.149261 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.164642 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.177169 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.195497 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.211268 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.226853 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.234624 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.244782 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.274501 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.283959 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.298079 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.315603 s [racon::Polisher::initialize] aligning overlaps [====================] 0.331360 s [racon::Polisher::initialize] transformed data into windows 0.006578 s [racon::Polisher::polish] generating consensus [=> ] 0.184593 s [racon::Polisher::polish] generating consensus [==> ] 0.184652 s [racon::Polisher::polish] generating consensus [===> ] 0.339782 s [racon::Polisher::polish] generating consensus [====> ] 0.339942 s [racon::Polisher::polish] generating consensus [=====> ] 0.412055 s [racon::Polisher::polish] generating consensus [======> ] 0.412124 s [racon::Polisher::polish] generating consensus [=======> ] 0.471191 s [racon::Polisher::polish] generating consensus [========> ] 0.471328 s [racon::Polisher::polish] generating consensus [=========> ] 0.566559 s [racon::Polisher::polish] generating consensus [==========> ] 0.619673 s [racon::Polisher::polish] generating consensus [===========> ] 0.899374 s [racon::Polisher::polish] generating consensus [============> ] 0.965015 s [racon::Polisher::polish] generating consensus [=============> ] 1.275219 s [racon::Polisher::polish] generating consensus [==============> ] 1.398992 s [racon::Polisher::polish] generating consensus [===============> ] 1.531246 s [racon::Polisher::polish] generating consensus [================> ] 1.606843 s [racon::Polisher::polish] generating consensus [=================> ] 1.760401 s [racon::Polisher::polish] generating consensus [==================> ] 1.775211 s [racon::Polisher::polish] generating consensus [===================>] 1.918769 s [racon::Polisher::polish] generating consensus [====================] 2.207225 s [racon::Polisher::] total = 2.611024 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (2677 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.005339 s [racon::Polisher::initialize] loaded sequences 0.049445 s [racon::Polisher::initialize] loaded overlaps 0.000587 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.028085 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.043107 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.062338 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.073685 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.089510 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.104337 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.137384 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.157749 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.169413 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.181223 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.201559 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.214065 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.229477 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.238335 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.257180 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.277168 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.285952 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.305163 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.310546 s [racon::Polisher::initialize] aligning overlaps [====================] 0.332760 s [racon::Polisher::initialize] transformed data into windows 0.002686 s [racon::Polisher::polish] generating consensus [=> ] 0.033484 s [racon::Polisher::polish] generating consensus [==> ] 0.057445 s [racon::Polisher::polish] generating consensus [===> ] 0.089442 s [racon::Polisher::polish] generating consensus [====> ] 0.106369 s [racon::Polisher::polish] generating consensus [=====> ] 0.123466 s [racon::Polisher::polish] generating consensus [======> ] 0.137100 s [racon::Polisher::polish] generating consensus [=======> ] 0.149508 s [racon::Polisher::polish] generating consensus [========> ] 0.162358 s [racon::Polisher::polish] generating consensus [=========> ] 0.182557 s [racon::Polisher::polish] generating consensus [==========> ] 0.205317 s [racon::Polisher::polish] generating consensus [===========> ] 0.238126 s [racon::Polisher::polish] generating consensus [============> ] 0.288635 s [racon::Polisher::polish] generating consensus [=============> ] 0.339188 s [racon::Polisher::polish] generating consensus [==============> ] 0.394027 s [racon::Polisher::polish] generating consensus [===============> ] 0.428986 s [racon::Polisher::polish] generating consensus [================> ] 0.454600 s [racon::Polisher::polish] generating consensus [=================> ] 0.491258 s [racon::Polisher::polish] generating consensus [==================> ] 0.512781 s [racon::Polisher::polish] generating consensus [===================>] 0.532719 s [racon::Polisher::polish] generating consensus [====================] 0.635731 s [racon::Polisher::] total = 1.044309 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1053 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.050012 s [racon::Polisher::initialize] loaded sequences 0.046684 s [racon::Polisher::initialize] loaded overlaps 0.011937 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.024592 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.043843 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.050927 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.063654 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.076029 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.088291 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.108896 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.121108 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.140044 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.155338 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.172132 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.201366 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.224146 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.243859 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.257763 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.280884 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.296350 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.305433 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.312511 s [racon::Polisher::initialize] aligning overlaps [====================] 0.336600 s [racon::Polisher::initialize] transformed data into windows 0.005614 s [racon::Polisher::polish] generating consensus [=> ] 0.032961 s [racon::Polisher::polish] generating consensus [==> ] 0.059069 s [racon::Polisher::polish] generating consensus [===> ] 0.092313 s [racon::Polisher::polish] generating consensus [====> ] 0.092815 s [racon::Polisher::polish] generating consensus [=====> ] 0.114886 s [racon::Polisher::polish] generating consensus [======> ] 0.129508 s [racon::Polisher::polish] generating consensus [=======> ] 0.151683 s [racon::Polisher::polish] generating consensus [========> ] 0.157726 s [racon::Polisher::polish] generating consensus [=========> ] 0.191792 s [racon::Polisher::polish] generating consensus [==========> ] 0.206685 s [racon::Polisher::polish] generating consensus [===========> ] 0.220088 s [racon::Polisher::polish] generating consensus [============> ] 0.224978 s [racon::Polisher::polish] generating consensus [=============> ] 0.240158 s [racon::Polisher::polish] generating consensus [==============> ] 0.240750 s [racon::Polisher::polish] generating consensus [===============> ] 0.276538 s [racon::Polisher::polish] generating consensus [================> ] 0.277151 s [racon::Polisher::polish] generating consensus [=================> ] 0.337277 s [racon::Polisher::polish] generating consensus [==================> ] 0.362576 s [racon::Polisher::polish] generating consensus [===================>] 0.385570 s [racon::Polisher::polish] generating consensus [====================] 0.388856 s [racon::Polisher::] total = 0.840445 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (848 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.044324 s [racon::Polisher::initialize] loaded sequences 0.042509 s [racon::Polisher::initialize] loaded overlaps 0.011062 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.405864 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.687009 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.925190 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.210364 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.478054 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.681259 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.953407 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.363973 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.710931 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.034420 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.302682 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.669366 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.034818 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.350697 s [racon::Polisher::initialize] aligning overlaps [===============> ] 4.722637 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.060619 s [racon::Polisher::initialize] aligning overlaps [=================> ] 5.406396 s [racon::Polisher::initialize] aligning overlaps [==================> ] 5.758881 s [racon::Polisher::initialize] aligning overlaps [===================>] 6.148667 s [racon::Polisher::initialize] aligning overlaps [====================] 6.498750 s [racon::Polisher::initialize] transformed data into windows 0.074954 s [racon::Polisher::polish] generating consensus [=> ] 1.057675 s [racon::Polisher::polish] generating consensus [==> ] 1.880417 s [racon::Polisher::polish] generating consensus [===> ] 2.704109 s [racon::Polisher::polish] generating consensus [====> ] 3.405115 s [racon::Polisher::polish] generating consensus [=====> ] 4.160832 s [racon::Polisher::polish] generating consensus [======> ] 5.025117 s [racon::Polisher::polish] generating consensus [=======> ] 5.919989 s [racon::Polisher::polish] generating consensus [========> ] 6.602777 s [racon::Polisher::polish] generating consensus [=========> ] 7.526373 s [racon::Polisher::polish] generating consensus [==========> ] 8.611229 s [racon::Polisher::polish] generating consensus [===========> ] 9.687546 s [racon::Polisher::polish] generating consensus [============> ] 10.744938 s [racon::Polisher::polish] generating consensus [=============> ] 11.601272 s [racon::Polisher::polish] generating consensus [==============> ] 12.549822 s [racon::Polisher::polish] generating consensus [===============> ] 13.540947 s [racon::Polisher::polish] generating consensus [================> ] 14.063079 s [racon::Polisher::polish] generating consensus [=================> ] 15.111801 s [racon::Polisher::polish] generating consensus [==================> ] 16.070170 s [racon::Polisher::polish] generating consensus [===================>] 16.936367 s [racon::Polisher::polish] generating consensus [====================] 17.155626 s [racon::Polisher::] total = 23.832098 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (23841 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.019437 s [racon::Polisher::initialize] loaded sequences 0.020374 s [racon::Polisher::initialize] loaded overlaps 0.012727 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.373309 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.629045 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.855157 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.201959 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.505272 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.712782 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.982840 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.328361 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.657087 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.981040 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.229223 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.574731 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.927898 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.249307 s [racon::Polisher::initialize] aligning overlaps [===============> ] 4.644914 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.069059 s [racon::Polisher::initialize] aligning overlaps [=================> ] 5.473470 s [racon::Polisher::initialize] aligning overlaps [==================> ] 5.889580 s [racon::Polisher::initialize] aligning overlaps [===================>] 6.321298 s [racon::Polisher::initialize] aligning overlaps [====================] 6.563264 s [racon::Polisher::initialize] transformed data into windows 0.044095 s [racon::Polisher::polish] generating consensus [=> ] 1.732939 s [racon::Polisher::polish] generating consensus [==> ] 2.819707 s [racon::Polisher::polish] generating consensus [===> ] 3.941009 s [racon::Polisher::polish] generating consensus [====> ] 4.777398 s [racon::Polisher::polish] generating consensus [=====> ] 5.926080 s [racon::Polisher::polish] generating consensus [======> ] 7.088500 s [racon::Polisher::polish] generating consensus [=======> ] 8.218268 s [racon::Polisher::polish] generating consensus [========> ] 9.084919 s [racon::Polisher::polish] generating consensus [=========> ] 10.160234 s [racon::Polisher::polish] generating consensus [==========> ] 11.514718 s [racon::Polisher::polish] generating consensus [===========> ] 12.875433 s [racon::Polisher::polish] generating consensus [============> ] 14.217498 s [racon::Polisher::polish] generating consensus [=============> ] 15.486990 s [racon::Polisher::polish] generating consensus [==============> ] 16.846639 s [racon::Polisher::polish] generating consensus [===============> ] 18.134665 s [racon::Polisher::polish] generating consensus [================> ] 18.946997 s [racon::Polisher::polish] generating consensus [=================> ] 20.731104 s [racon::Polisher::polish] generating consensus [==================> ] 22.166151 s [racon::Polisher::polish] generating consensus [===================>] 23.305498 s [racon::Polisher::polish] generating consensus [====================] 23.670946 s [racon::Polisher::] total = 30.336055 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (30344 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.042800 s [racon::Polisher::initialize] loaded sequences 0.043049 s [racon::Polisher::initialize] loaded overlaps 0.009828 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.393632 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.640749 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.863030 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.170132 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.447031 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.649263 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.942318 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.341062 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.733921 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.116506 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.398869 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.822276 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.224261 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.569731 s [racon::Polisher::initialize] aligning overlaps [===============> ] 4.942752 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.277602 s [racon::Polisher::initialize] aligning overlaps [=================> ] 5.619543 s [racon::Polisher::initialize] aligning overlaps [==================> ] 6.007726 s [racon::Polisher::initialize] aligning overlaps [===================>] 6.382889 s [racon::Polisher::initialize] aligning overlaps [====================] 6.560877 s [racon::Polisher::initialize] transformed data into windows 0.096693 s [racon::Polisher::polish] generating consensus [=> ] 1.122214 s [racon::Polisher::polish] generating consensus [==> ] 1.944830 s [racon::Polisher::polish] generating consensus [===> ] 2.804253 s [racon::Polisher::polish] generating consensus [====> ] 3.499905 s [racon::Polisher::polish] generating consensus [=====> ] 4.255047 s [racon::Polisher::polish] generating consensus [======> ] 5.096815 s [racon::Polisher::polish] generating consensus [=======> ] 5.967489 s [racon::Polisher::polish] generating consensus [========> ] 6.632313 s [racon::Polisher::polish] generating consensus [=========> ] 7.436442 s [racon::Polisher::polish] generating consensus [==========> ] 8.391285 s [racon::Polisher::polish] generating consensus [===========> ] 9.263616 s [racon::Polisher::polish] generating consensus [============> ] 10.121884 s [racon::Polisher::polish] generating consensus [=============> ] 10.935673 s [racon::Polisher::polish] generating consensus [==============> ] 11.874908 s [racon::Polisher::polish] generating consensus [===============> ] 12.981362 s [racon::Polisher::polish] generating consensus [================> ] 13.547289 s [racon::Polisher::polish] generating consensus [=================> ] 14.679559 s [racon::Polisher::polish] generating consensus [==================> ] 15.770727 s [racon::Polisher::polish] generating consensus [===================>] 16.668893 s [racon::Polisher::polish] generating consensus [====================] 16.909060 s [racon::Polisher::] total = 23.669536 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (23678 ms) [----------] 10 tests from RaconPolishingTest (86709 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (86729 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1012268 and its subdirectories I: Current time: Sun Feb 23 00:50:07 -12 2025 I: pbuilder-time-stamp: 1740315007