I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 28 18:40:51 -12 2025 I: pbuilder-time-stamp: 1738132851 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sambamba_1.0.1+dfsg-2.dsc] I: copying [./sambamba_1.0.1+dfsg.orig.tar.xz] I: copying [./sambamba_1.0.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./sambamba_1.0.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting sambamba in sambamba-1.0.1+dfsg dpkg-source: info: unpacking sambamba_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_1.0.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3198177/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='91ca9f88c0194882a30036068b6ac451' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3198177' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d44tqQYm/pbuilderrc_Xf5b --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d44tqQYm/b1 --logfile b1/build.log sambamba_1.0.1+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3198177/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19843 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on shunit2; however: Package shunit2 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on ldc; however: Package ldc is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} ldc{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libllvm19{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared110{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libxxhash-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shunit2{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lld llvm-19-linker-tools lynx publicsuffix wget 0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 94.8 MB of archives. After unpacking 417 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-2 [92.1 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.5 [2272 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-2 [861 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libphobos2-ldc-shared110 amd64 1:1.40.0-4 [1201 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libphobos2-ldc-shared-dev amd64 1:1.40.0-4 [6273 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 54 http://deb.debian.org/debian unstable/main amd64 ldc amd64 1:1.40.0-4 [4059 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 default-d-compiler amd64 0.6.10 [2788 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 dh-dlang all 0.6.10 [5088 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 60 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.0-2 [2790 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.1-1+b1 [475 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 liblz4-dev amd64 1.10.0-3 [88.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 meson all 1.7.0-1 [639 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 shunit2 all 2.1.8-4 [33.9 kB] Fetched 94.8 MB in 3s (34.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19843 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../049-libkadm5clnt-mit12_1.21.3-4_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../050-libkdb5-10t64_1.21.3-4_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-4) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../051-libkadm5srv-mit12_1.21.3-4_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-4) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../052-krb5-multidev_1.21.3-4_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../053-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libbrotli-dev:amd64. 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Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../060-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../061-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../062-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../063-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../064-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:amd64. 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Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.9.1-1) ... Setting up dh-dlang (0.6.10) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up meson (1.7.0-1) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libcurl4-gnutls-dev:amd64 (8.11.1-1+b1) ... Setting up libhts-dev:amd64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean mkdir -p obj-x86_64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_clean rm -rf /build/reproducible-path/sambamba-1.0.1+dfsg/output/ rm -f test.log make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary mkdir -p obj-x86_64-linux-gnu dh binary --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/sambamba-1.0.1+dfsg Build dir: /build/reproducible-path/sambamba-1.0.1+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: Sambamba Project version: 1.0.1 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-15) 14.2.0") C linker for the host machine: cc ld.bfd 2.43.90.20250127 D compiler for the host machine: ldc2 (llvm 1.40.0 "LDC - the LLVM D compiler (1.40.0):") D linker for the host machine: ldc2 ld.bfd 2.43.90.20250127 Host machine cpu family: x86_64 Host machine cpu: x86_64 ../meson.build:18: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.source_root. use meson.project_source_root() or meson.global_source_root() instead. ../meson.build:19: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.build_root. use meson.project_build_root() or meson.global_build_root() instead. Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency liblz4 found: YES 1.10.0 Run-time dependency zlib found: YES 1.3.1 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/usr/bin/mkdir) ../meson.build:220: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 ../meson.build:227: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead Program /build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh found: YES (/build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh) Build targets in project: 1 WARNING: Deprecated features used: * 0.55.0: {'ExternalProgram.path'} * 0.56.0: {'meson.build_root', 'meson.source_root'} Sambamba 1.0.1 User defined options buildtype : plain cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 libdir : lib/x86_64-linux-gnu localstatedir : /var optimize_strong : true prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_build -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j20 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d [3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_base.d.o.deps -of=sambamba.p/BioD_bio_core_base.d.o -c ../BioD/bio/core/base.d [10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_tmpdir.d.o.deps -of=sambamba.p/sambamba_utils_common_tmpdir.d.o -c ../sambamba/utils/common/tmpdir.d [11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d [12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d [13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d [16/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [17/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d [18/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o -c ../BioD/bio/core/bgzf/virtualoffset.d [19/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_call.d.o.deps -of=sambamba.p/BioD_bio_core_call.d.o -c ../BioD/bio/core/call.d [20/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d [21/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_genotype.d.o.deps -of=sambamba.p/BioD_bio_core_genotype.d.o -c ../BioD/bio/core/genotype.d [22/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d [23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d [24/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d [25/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d [26/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d [27/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d [28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d [30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d [31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d [32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d [33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d [34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d [35/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d [36/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d [37/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d [38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_zlib.d.o.deps -of=sambamba.p/BioD_bio_core_utils_zlib.d.o -c ../BioD/bio/core/utils/zlib.d [39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d [42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d ../BioD/bio/core/utils/stream.d(32): Deprecation: switch case fallthrough - use 'goto case;' if intended [43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d [44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d [45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d [46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d [48/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [49/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d [50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d [53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [54/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d [56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d [57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d [58/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [59/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [60/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d [67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d [74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d [75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reference.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reference.d.o -c ../BioD/bio/std/hts/bam/reference.d [77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d [78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [79/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d [81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d [82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d [83/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [84/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [85/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [86/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d [87/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d [88/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [89/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [90/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [91/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [92/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d [93/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d [94/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_reader.d.o -c ../BioD/bio/std/hts/sam/reader.d [95/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d [96/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d [97/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [98/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d [99/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [100/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [101/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [102/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [103/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d [104/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g 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-makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -c /build/reproducible-path/sambamba-1.0.1+dfsg/obj-x86_64-linux-gnu/utils/ldc_version_info_.d [122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d [124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d [126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead 11 deprecation warnings omitted, use `-verrors=0` to show all [136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -fcf-protection=full -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/x86_64-linux-gnu -L=-rpath-link -L=/usr/lib/x86_64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -release -wi -g -O2 -fcf-protection=full /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblz4.so /usr/lib/x86_64-linux-gnu/libxxhash.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' echo "FIXME: Build time tests needs fixing" FIXME: Build time tests needs fixing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/reproducible-path/sambamba-1.0.1\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/bin Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-flagstat.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-index.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-markdup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-merge.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-pileup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-slice.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-sort.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-view.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/etc/bash_completion.d/sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_missing --fail-missing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'sambamba' in '../sambamba_1.0.1+dfsg-2_amd64.deb'. dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_1.0.1+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sambamba_1.0.1+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../sambamba_1.0.1+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3198177 and its subdirectories I: Current time: Tue Jan 28 18:46:03 -12 2025 I: pbuilder-time-stamp: 1738133163