I: pbuilder: network access will be disabled during build
I: Current time: Sun Mar 2 13:23:54 -12 2025
I: pbuilder-time-stamp: 1740965034
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [spaln_3.0.2+dfsg-2.dsc]
I: copying [./spaln_3.0.2+dfsg.orig.tar.xz]
I: copying [./spaln_3.0.2+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./spaln_3.0.2+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting spaln in spaln-3.0.2+dfsg
dpkg-source: info: unpacking spaln_3.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking spaln_3.0.2+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying add_path_to_testscript.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2159937/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='245a9f9fce494fb39c9795417c9ff91f'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2159937'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.i4ata0no/pbuilderrc_epoN --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.i4ata0no/b1 --logfile b1/build.log spaln_3.0.2+dfsg-2.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2159937/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19778 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
Package libgsl-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded.
Need to get 23.8 MB of archives. After unpacking 90.8 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Fetched 23.8 MB in 2s (10.6 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
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(Reading database ... 19778 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
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Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ...
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Unpacking gettext-base (0.23.1-1) ...
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Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
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Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
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Setting up libpipeline1:amd64 (1.5.8-1) ...
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Setting up bsdextrautils (2.40.4-5) ...
Setting up libgslcblas0:amd64 (2.8+dfsg-5) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
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Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
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Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up libgsl28:amd64 (2.8+dfsg-5) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libgsl-dev (2.8+dfsg-5) ...
Setting up libtool (2.5.4-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.41-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/spaln-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spaln_3.0.2+dfsg-2_source.changes
dpkg-buildpackage: info: source package spaln
dpkg-buildpackage: info: source version 3.0.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_auto_clean || true
rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile
make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files
rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --sourcedirectory=src
dh_update_autotools_config -O--sourcedirectory=src
dh_autoreconf -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg'
# the configure script is not originated from autoconf and needs to be manually called
cd src && AR="x86_64-linux-gnu-ar rc" exec_prefix=/usr/bin table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb ./configure
OK, CXX=x86_64-linux-gnu-g++ CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic
binaries install to /usr/bin
tables install to /usr/share/spaln/table
alndbs install to /usr/share/spaln/seqdb
wrote Makefile
wrote files
OK. try make and make install. good luck!
make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_auto_build -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin
cd src && make -j20 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin
make[2]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c blksrc.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c aln2.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c dbs.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c gaps.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c codepot.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c divseq.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c gsinfo.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2b1.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2d1.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2h1.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2s1.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c bitpat.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c eijunc.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c seq.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c simmtx.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sqpr.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utilseq.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c vmf.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c wln.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c boyer_moore.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c clib.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
seq.cc: In function 'void reportseq(Seq**, int)':
seq.cc:483:50: warning: format '%p' expects argument of type 'void*', but argument 9 has type 'int*' [-Wformat=]
483 | printf("%d\t%d\t%d\t%d\t%d\t%d\t%p\t%p\n", i + 1,
| ~^
| |
| void*
| %n
484 | sd->sid, sd->vrtl, sd->len, sd->area_, sd->did, sd->seq_, sd->lens);
| ~~~~~~~~
| |
| int*
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c iolib.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c mfile.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sets.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c supprime.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o
x86_64-linux-gnu-ranlib clib.a
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \
fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o eijunc.o \
seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o
x86_64-linux-gnu-ranlib sblib.a
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
sortgrcd.cc: In function 'int count_record(const char*, const char*, size_t)':
sortgrcd.cc:999:25: warning: ISO C++ forbids variable length array 'buf' [-Wvla]
999 | char buf[rcdsize];
| ^~~
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o spaln spaln.cc blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
spaln.cc: In function 'blkaln.isra':
spaln.cc:858:46: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
858 | Gsinfo* GsI = new Gsinfo[nparalog + 1];
| ^
/usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here
133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'match_2',
inlined from 'spaln_job' at spaln.cc:1142:14:
spaln.cc:764:46: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
764 | Gsinfo* GsI = new Gsinfo[nparalog + 1];
| ^
/usr/include/c++/14/new: In function 'spaln_job':
/usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here
133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
make[2]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_auto_test -O--sourcedirectory=src
cd src && make -j20 test "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c autocomp.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c extcds.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c montseq.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c pattern.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c resite.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o exinpot exinpot.cc sblib.a clib.a -lpthread -lm -lz
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o kmers kmers.cc sblib.a clib.a -lpthread -lm -lz
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o npssm npssm.cc sblib.a clib.a -lpthread -lm -lz
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utn.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c ildpdf.cc
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c decompild.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fitild.cc
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-ar rc ublib.a autocomp.o extcds.o \
montseq.o pattern.o resite.o
x86_64-linux-gnu-ranlib ublib.a
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o dvn dvn.cc ublib.a sblib.a clib.a -lpthread -lm -lz
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o rdn rdn.cc ublib.a sblib.a clib.a -lpthread -lm -lz
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o fitild -DMAIN fitild.cc ildpdf.o clib.a -lpthread -lm -lz \
-L/usr/local/lib -lm -lgsl -lgslcblas
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o compild compild.cc ildpdf.o clib.a -lpthread -lm -lz -lm -lgsl -lgslcblas
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o decompild decompild.o ildpdf.o fitild.o clib.a -lpthread -lm -lz -lgsl -lgslcblas
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o plotild plotild.cc ildpdf.o clib.a -lpthread -lm -lz -lm -lgsl -lgslcblas
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
plotild.cc: In function 'getiprms':
plotild.cc:136:49: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
136 | IldPrm* ipprm = new IldPrm[nn + nprm + 1];
| ^
/usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here
133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o utn utn.o ublib.a sblib.a clib.a -lpthread -lm -lz
please make install before test
make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
rm -fr -- /tmp/dh-xdg-rundir-RCLQ5FqI
create-stamp debian/debhelper-build-stamp
dh_testroot -O--sourcedirectory=src
dh_prep -O--sourcedirectory=src
rm -f -- debian/spaln.substvars debian/spaln-data.substvars
rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ debian/.debhelper/generated/spaln-data/ debian/spaln-data/
rm -f debian/spaln-data.debhelper.log debian/spaln.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_auto_install -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin
install -m0755 -d /build/reproducible-path/spaln-3.0.2\+dfsg/debian/tmp
cd src && make -j20 install DESTDIR=/build/reproducible-path/spaln-3.0.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin
make[2]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
test -d /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin
if [ -s spaln ]; then\
cp spaln sortgrcd makmdm makdbs /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin; \
fi
if [ -s exinpot ]; then \
cp dvn exinpot kmers npssm rdn utn /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin; \
fi
if [ -s fitild ]; then \
cp fitild compild decompild plotild /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin; \
fi
test -d /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/share/spaln/table || mkdir -p /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/share/spaln/table
./makmdm /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/share/spaln/table
7.6862 5.1057 4.2546 5.1269 2.0279 4.1061 6.1820 7.4714 2.2983 5.2569
9.1111 5.9498 2.3414 4.0530 5.0532 6.8225 5.8518 1.4336 3.2303 6.6374
Pam = 0 Norl fact = 106.899 trace = 106.899
Pam = 10 Norl fact = 13.996 trace = 41.995
Pam = 20 Norl fact = 15.588 trace = 45.299
Pam = 30 Norl fact = 16.894 trace = 47.531
Pam = 40 Norl fact = 18.094 trace = 49.266
Pam = 50 Norl fact = 19.249 trace = 50.701
Pam = 60 Norl fact = 20.386 trace = 51.928
Pam = 70 Norl fact = 21.522 trace = 52.997
Pam = 80 Norl fact = 22.667 trace = 53.943
Pam = 90 Norl fact = 23.828 trace = 54.788
Pam = 100 Norl fact = 25.012 trace = 55.547
Pam = 110 Norl fact = 26.222 trace = 56.234
Pam = 120 Norl fact = 27.462 trace = 56.858
Pam = 130 Norl fact = 28.735 trace = 57.427
Pam = 140 Norl fact = 30.044 trace = 57.946
Pam = 150 Norl fact = 31.391 trace = 58.421
Pam = 160 Norl fact = 32.778 trace = 58.858
Pam = 170 Norl fact = 34.208 trace = 59.259
Pam = 180 Norl fact = 35.683 trace = 59.629
Pam = 190 Norl fact = 37.204 trace = 59.970
Pam = 200 Norl fact = 38.774 trace = 60.286
Pam = 210 Norl fact = 40.394 trace = 60.580
Pam = 220 Norl fact = 42.066 trace = 60.854
Pam = 230 Norl fact = 43.793 trace = 61.110
Pam = 240 Norl fact = 45.577 trace = 61.350
Pam = 250 Norl fact = 47.419 trace = 61.576
Pam = 260 Norl fact = 49.322 trace = 61.791
Pam = 270 Norl fact = 51.287 trace = 61.996
Pam = 280 Norl fact = 53.318 trace = 62.191
Pam = 290 Norl fact = 55.415 trace = 62.380
Pam = 300 Norl fact = 57.582 trace = 62.563
test -d /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/share/spaln/seqdb || mkdir -p /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/share/spaln/seqdb
make[2]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg/src'
make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_install -O--sourcedirectory=src
install -m0755 -d debian/spaln//usr
cp --reflink=auto -a debian/tmp/usr/bin debian/spaln//usr/
install -m0755 -d debian/spaln-data//usr
cp --reflink=auto -a debian/tmp/usr/share debian/spaln-data//usr/
dh_installdocs -O--sourcedirectory=src
install -m0755 -d debian/spaln/usr/share/doc/spaln
install -m0755 -d debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./README.md debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./debian/README.test debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./debian/tests/run-unit-test debian/spaln/usr/share/doc/spaln
chmod -R u\+rw,go=rX debian/spaln/usr/share/doc
install -p -m0644 debian/README.Debian debian/spaln/usr/share/doc/spaln/README.Debian
install -p -m0644 debian/copyright debian/spaln/usr/share/doc/spaln/copyright
install -m0755 -d debian/spaln-data/usr/share/doc/spaln-data
install -p -m0644 debian/copyright debian/spaln-data/usr/share/doc/spaln-data/copyright
dh_installchangelogs -O--sourcedirectory=src
install -m0755 -d debian/spaln/usr/share/doc/spaln
install -p -m0644 debian/.debhelper/generated/spaln/dh_installchangelogs.dch.trimmed debian/spaln/usr/share/doc/spaln/changelog.Debian
install -m0755 -d debian/spaln-data/usr/share/doc/spaln-data
install -p -m0644 debian/.debhelper/generated/spaln-data/dh_installchangelogs.dch.trimmed debian/spaln-data/usr/share/doc/spaln-data/changelog.Debian
dh_installman -O--sourcedirectory=src
install -m0755 -d debian/spaln/usr/share/man/man1/
install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1
install -m0755 -d debian/spaln/usr/share/man/man1/
install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/spaln.1
mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1
chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1
mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1
dh_installsystemduser -O--sourcedirectory=src
dh_perl -O--sourcedirectory=src
mv debian/spaln-data.substvars.new debian/spaln-data.substvars
dh_link -O--sourcedirectory=src
dh_strip_nondeterminism -O--sourcedirectory=src
Using 1707770215 as canonical time
Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.faa.gz using File::StripNondeterminism::handlers::gzip
Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.cf.gz using File::StripNondeterminism::handlers::gzip
Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc_g.gf.gz using File::StripNondeterminism::handlers::gzip
dh_compress -O--sourcedirectory=src
cd debian/spaln
cd debian/spaln-data
chmod a-x usr/share/doc/spaln-data/changelog.Debian
chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
gzip -9nf usr/share/doc/spaln-data/changelog.Debian
gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
cd '/build/reproducible-path/spaln-3.0.2+dfsg'
cd '/build/reproducible-path/spaln-3.0.2+dfsg'
dh_fixperms -O--sourcedirectory=src
find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/spaln-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -O--sourcedirectory=src
dh_dwz -a -O--sourcedirectory=src
install -m0755 -d debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu
dwz -mdebian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -- debian/spaln/usr/bin/compild debian/spaln/usr/bin/decompild debian/spaln/usr/bin/dvn debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/fitild debian/spaln/usr/bin/kmers debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/npssm debian/spaln/usr/bin/plotild debian/spaln/usr/bin/rdn debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln debian/spaln/usr/bin/utn
objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug
chmod 0644 -- debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug
dh_strip -a -O--sourcedirectory=src
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/fd
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/fd/2ffee7dfddaa972e08aba8eaf8548087b68ff5.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/fd/2ffee7dfddaa972e08aba8eaf8548087b68ff5.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/fd/2ffee7dfddaa972e08aba8eaf8548087b68ff5.debug debian/spaln/usr/bin/makdbs
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3e
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/plotild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3e/9a3d23bd9fdd37aa0681384505ac64725af43a.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3e/9a3d23bd9fdd37aa0681384505ac64725af43a.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/plotild
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3e/9a3d23bd9fdd37aa0681384505ac64725af43a.debug debian/spaln/usr/bin/plotild
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/46
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/46/68c6ba9a8970ca6f05f985df0506337b2657ce.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/46/68c6ba9a8970ca6f05f985df0506337b2657ce.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/46/68c6ba9a8970ca6f05f985df0506337b2657ce.debug debian/spaln/usr/bin/spaln
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/af
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/rdn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/af/f6efbd2112447742f34ad95311a911569fe72e.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/af/f6efbd2112447742f34ad95311a911569fe72e.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/rdn
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/af/f6efbd2112447742f34ad95311a911569fe72e.debug debian/spaln/usr/bin/rdn
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cd
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/compild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cd/3d931e80cf5bbf75b5d2dd17d5160018031245.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cd/3d931e80cf5bbf75b5d2dd17d5160018031245.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/compild
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cd/3d931e80cf5bbf75b5d2dd17d5160018031245.debug debian/spaln/usr/bin/compild
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7b
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/dvn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7b/8dcab46cc0367b4759cbcb705b0d695b0cfebb.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7b/8dcab46cc0367b4759cbcb705b0d695b0cfebb.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/dvn
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7b/8dcab46cc0367b4759cbcb705b0d695b0cfebb.debug debian/spaln/usr/bin/dvn
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f0
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/kmers debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f0/52a167d7a8860637bbe30482b14eccfe2ed725.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f0/52a167d7a8860637bbe30482b14eccfe2ed725.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/kmers
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f0/52a167d7a8860637bbe30482b14eccfe2ed725.debug debian/spaln/usr/bin/kmers
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a3
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/exinpot debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a3/cfb14c307f9e9dbd47179b4a26dfc783ef8620.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a3/cfb14c307f9e9dbd47179b4a26dfc783ef8620.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/exinpot
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a3/cfb14c307f9e9dbd47179b4a26dfc783ef8620.debug debian/spaln/usr/bin/exinpot
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/1c
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/utn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/1c/02cb9353ca6860804395feb4502b6f2e7ff8dc.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/1c/02cb9353ca6860804395feb4502b6f2e7ff8dc.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/utn
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/1c/02cb9353ca6860804395feb4502b6f2e7ff8dc.debug debian/spaln/usr/bin/utn
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9e
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9e/850836c580e34fc96735165cbf3aaa7f846761.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9e/850836c580e34fc96735165cbf3aaa7f846761.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9e/850836c580e34fc96735165cbf3aaa7f846761.debug debian/spaln/usr/bin/sortgrcd
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/50
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/fitild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/50/b46f15deafe0af00cd7c5e1ed5533b9b7f00b7.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/50/b46f15deafe0af00cd7c5e1ed5533b9b7f00b7.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/fitild
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/50/b46f15deafe0af00cd7c5e1ed5533b9b7f00b7.debug debian/spaln/usr/bin/fitild
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/37
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/npssm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/37/2c1567b3e2486de2cf45ad06df6b722a341203.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/37/2c1567b3e2486de2cf45ad06df6b722a341203.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/npssm
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/37/2c1567b3e2486de2cf45ad06df6b722a341203.debug debian/spaln/usr/bin/npssm
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/87
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/87/809ebc97828c93c03d47a09125d0ae6cb47630.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/87/809ebc97828c93c03d47a09125d0ae6cb47630.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/87/809ebc97828c93c03d47a09125d0ae6cb47630.debug debian/spaln/usr/bin/makmdm
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/05
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/decompild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/05/69f495cbc499617238a68658f3cf74e6e84445.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/05/69f495cbc499617238a68658f3cf74e6e84445.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/decompild
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/05/69f495cbc499617238a68658f3cf74e6e84445.debug debian/spaln/usr/bin/decompild
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/spaln/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/spaln/usr/lib/debug
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/share/doc
ln -s spaln debian/.debhelper/spaln/dbgsym-root/usr/share/doc/spaln-dbgsym
install -m0755 -d debian/.debhelper/spaln
dh_makeshlibs -a -O--sourcedirectory=src
rm -f debian/spaln/DEBIAN/shlibs
dh_shlibdeps -a -O--sourcedirectory=src
install -m0755 -d debian/spaln/DEBIAN
dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/plotild debian/spaln/usr/bin/spaln debian/spaln/usr/bin/rdn debian/spaln/usr/bin/compild debian/spaln/usr/bin/dvn debian/spaln/usr/bin/kmers debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/utn debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/fitild debian/spaln/usr/bin/npssm debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/decompild
dh_installdeb -O--sourcedirectory=src
install -m0755 -d debian/spaln/DEBIAN
install -m0755 -d debian/spaln-data/DEBIAN
dh_gencontrol -O--sourcedirectory=src
install -m0755 -d debian/spaln-data/DEBIAN
echo misc:Depends= >> debian/spaln-data.substvars
echo misc:Pre-Depends= >> debian/spaln-data.substvars
dpkg-gencontrol -pspaln-data -ldebian/changelog -Tdebian/spaln-data.substvars -cdebian/control -Pdebian/spaln-data
install -m0755 -d debian/spaln/DEBIAN
echo misc:Depends= >> debian/spaln.substvars
echo misc:Pre-Depends= >> debian/spaln.substvars
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/DEBIAN
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -cdebian/control -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=spaln-dbgsym "-DDepends=spaln (= \${binary:Version})" "-DDescription=debug symbols for spaln" "-DBuild-Ids=0569f495cbc499617238a68658f3cf74e6e84445 1c02cb9353ca6860804395feb4502b6f2e7ff8dc 372c1567b3e2486de2cf45ad06df6b722a341203 3e9a3d23bd9fdd37aa0681384505ac64725af43a 4668c6ba9a8970ca6f05f985df0506337b2657ce 50b46f15deafe0af00cd7c5e1ed5533b9b7f00b7 7b8dcab46cc0367b4759cbcb705b0d695b0cfebb 87809ebc97828c93c03d47a09125d0ae6cb47630 9e850836c580e34fc96735165cbf3aaa7f846761 a3cfb14c307f9e9dbd47179b4a26dfc783ef8620 aff6efbd2112447742f34ad95311a911569fe72e cd3d931e80cf5bbf75b5d2dd17d5160018031245 f052a167d7a8860637bbe30482b14eccfe2ed725 fd2ffee7dfddaa972e08aba8eaf8548087b68ff5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -cdebian/control -Pdebian/spaln
chmod 0644 -- debian/spaln/DEBIAN/control
dpkg-gencontrol: warning: package spaln-data: substitution variable ${perl:Depends} unused, but is defined
chmod 0644 -- debian/spaln-data/DEBIAN/control
dh_md5sums -O--sourcedirectory=src
install -m0755 -d debian/spaln/DEBIAN
cd debian/spaln >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/spaln/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/spaln/dbgsym-root/DEBIAN
install -m0755 -d debian/spaln-data/DEBIAN
cd debian/.debhelper/spaln/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/spaln-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/md5sums
chmod 0644 -- debian/spaln-data/DEBIAN/md5sums
dh_builddeb -O--sourcedirectory=src
dpkg-deb --root-owner-group --build debian/spaln ..
dpkg-deb --root-owner-group --build debian/spaln-data ..
dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root ..
dpkg-deb: building package 'spaln' in '../spaln_3.0.2+dfsg-2_amd64.deb'.
dpkg-deb: building package 'spaln-data' in '../spaln-data_3.0.2+dfsg-2_all.deb'.
dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_3.0.2+dfsg-2_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../spaln_3.0.2+dfsg-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../spaln_3.0.2+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2159937 and its subdirectories
I: Current time: Sun Mar 2 13:35:15 -12 2025
I: pbuilder-time-stamp: 1740965715