I: pbuilder: network access will be disabled during build
I: Current time: Fri Jan 31 04:15:57 -12 2025
I: pbuilder-time-stamp: 1738340157
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [ariba_2.14.7+ds-7.dsc]
I: copying [./ariba_2.14.7+ds.orig.tar.xz]
I: copying [./ariba_2.14.7+ds-7.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./ariba_2.14.7+ds-7.dsc: unsupported subcommand
dpkg-source: info: extracting ariba in ariba-2.14.7+ds
dpkg-source: info: unpacking ariba_2.14.7+ds.orig.tar.xz
dpkg-source: info: unpacking ariba_2.14.7+ds-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch
dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch
dpkg-source: info: applying add-testdata.patch
dpkg-source: info: applying disable-tests-with-internet-access.patch
dpkg-source: info: applying support-pymummer-0.11.patch
dpkg-source: info: applying run-debian-spades-wrapper.patch
dpkg-source: info: applying python3.12.patch
dpkg-source: info: applying python3.12_syntax_warning.patch
dpkg-source: info: applying py3.13.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2602871/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='6a734fc40d8b440da51cf866fc6280de'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2602871'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bl0YB5Wj/pbuilderrc_KHC7 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bl0YB5Wj/b1 --logfile b1/build.log ariba_2.14.7+ds-7.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2602871/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-dendropy; however:
Package python3-dendropy is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pymummer; however:
Package python3-pymummer is not installed.
pbuilder-satisfydepends-dummy depends on python3-pysam; however:
Package python3-pysam is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-bs4; however:
Package python3-bs4 is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
pbuilder-satisfydepends-dummy depends on python3-tk; however:
Package python3-tk is not installed.
pbuilder-satisfydepends-dummy depends on bowtie2; however:
Package bowtie2 is not installed.
pbuilder-satisfydepends-dummy depends on cd-hit; however:
Package cd-hit is not installed.
pbuilder-satisfydepends-dummy depends on mash; however:
Package mash is not installed.
pbuilder-satisfydepends-dummy depends on libminimap-dev; however:
Package libminimap-dev is not installed.
pbuilder-satisfydepends-dummy depends on libfml-dev; however:
Package libfml-dev is not installed.
pbuilder-satisfydepends-dummy depends on mummer; however:
Package mummer is not installed.
pbuilder-satisfydepends-dummy depends on fastaq; however:
Package fastaq is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
pbuilder-satisfydepends-dummy depends on asciidoctor; however:
Package asciidoctor is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapnp-1.1.0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libminimap-dev{a} libminimap0{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libruby{a} libruby3.3{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsigsegv2{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} mash{a} media-types{a} mummer{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bs4{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dendropy{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pymummer{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-soupsieve{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-did-you-mean{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-rubygems{a} ruby-test-unit{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} samtools{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl fonts-dejavu-extra fonts-lato isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-cssselect python3-html5lib python3-olefile python3-pooch python3-pygments ruby-sdbm shared-mime-info wget xdg-user-dirs zip
0 packages upgraded, 242 newly installed, 0 to remove and 0 not upgraded.
Need to get 154 MB of archives. After unpacking 701 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libsigsegv2 arm64 2.14-1+b2 [34.3 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 gawk arm64 1:5.2.1-2+b2 [644 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B]
Get: 17 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 rubygems-integration all 1.19 [5488 B]
Get: 34 http://deb.debian.org/debian unstable/main arm64 rake all 13.2.1-1 [65.2 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 ruby-did-you-mean all 1.6.3-2 [20.9 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 ruby-minitest all 5.25.4-1 [66.2 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 ruby-power-assert all 2.0.3-1 [11.8 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 ruby-test-unit all 3.6.2-1 [79.1 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 ruby-xmlrpc all 0.3.3-2 [24.4 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 libruby3.3 arm64 3.3.7-1 [6122 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 ruby3.3 arm64 3.3.7-1 [828 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libruby arm64 1:3.3~3.1 [5012 B]
Get: 46 http://deb.debian.org/debian unstable/main arm64 ruby-rubygems all 3.6.3-1 [406 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 ruby arm64 1:3.3~3.1 [6112 B]
Get: 48 http://deb.debian.org/debian unstable/main arm64 ruby-asciidoctor all 2.0.23-1 [214 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 asciidoctor all 2.0.23-1 [88.7 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-2 [861 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.46-1 [275 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B]
Get: 80 http://deb.debian.org/debian unstable/main arm64 bowtie2 arm64 2.5.4-1+b1 [1403 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 cd-hit arm64 4.8.1-4+b1 [509 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2.1 [539 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 114 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 115 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 116 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 117 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 118 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 119 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 120 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 121 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 122 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 123 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 124 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 125 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 126 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 127 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 128 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 129 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB]
Get: 130 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 131 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 132 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB]
Get: 133 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB]
Get: 134 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.20-3+b1 [629 kB]
Get: 135 http://deb.debian.org/debian unstable/main arm64 fastaq all 3.17.0-9 [47.8 kB]
Get: 136 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB]
Get: 137 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB]
Get: 138 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB]
Get: 139 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 140 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 141 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 142 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 143 http://deb.debian.org/debian unstable/main arm64 libcapnp-1.1.0 arm64 1.1.0-2 [1297 kB]
Get: 144 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Get: 145 http://deb.debian.org/debian unstable/main arm64 libfml0 arm64 0.1+git20221215.85f159e-1 [65.6 kB]
Get: 146 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 147 http://deb.debian.org/debian unstable/main arm64 libfml-dev arm64 0.1+git20221215.85f159e-1 [79.9 kB]
Get: 148 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 149 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB]
Get: 150 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB]
Get: 151 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB]
Get: 152 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 154 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB]
Get: 155 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB]
Get: 156 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 157 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 158 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 159 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 160 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 161 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 162 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 163 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB]
Get: 164 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB]
Get: 165 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB]
Get: 166 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 167 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 168 http://deb.debian.org/debian unstable/main arm64 libminimap0 arm64 0.2-8+b3 [21.1 kB]
Get: 169 http://deb.debian.org/debian unstable/main arm64 libminimap-dev arm64 0.2-8+b3 [32.5 kB]
Get: 170 http://deb.debian.org/debian unstable/main arm64 libmurmurhash2 arm64 1.6-1+b1 [6592 B]
Get: 171 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 172 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 173 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get: 174 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB]
Get: 175 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB]
Get: 176 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB]
Get: 177 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB]
Get: 178 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB]
Get: 179 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-5 [1985 kB]
Get: 180 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-5 [4822 kB]
Get: 181 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.13.1-2 [1072 B]
Get: 182 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB]
Get: 183 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 184 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 185 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 186 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 187 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB]
Get: 188 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 189 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB]
Get: 190 http://deb.debian.org/debian unstable/main arm64 mash arm64 2.3+dfsg-6+b2 [169 kB]
Get: 191 http://deb.debian.org/debian unstable/main arm64 mummer arm64 3.23+dfsg-8+b1 [643 kB]
Get: 192 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB]
Get: 193 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-5 [677 kB]
Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B]
Get: 195 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB]
Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB]
Get: 197 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-5 [506 kB]
Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.13.1-2 [1076 B]
Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.3.0-1 [68.8 kB]
Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.2+ds-2 [135 kB]
Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.2+ds-2 [4129 kB]
Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 203 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-5 [111 kB]
Get: 204 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-3 [101 kB]
Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.1-1 [9464 B]
Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-4 [81.6 kB]
Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-4 [515 kB]
Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB]
Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.5-1 [1117 kB]
Get: 212 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB]
Get: 213 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 214 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-1 [1663 kB]
Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB]
Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-soupsieve all 2.6-1 [38.3 kB]
Get: 217 http://deb.debian.org/debian unstable/main arm64 python3-bs4 all 4.12.3-3 [133 kB]
Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB]
Get: 219 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get: 220 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 221 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 222 http://deb.debian.org/debian unstable/main arm64 python3-dendropy all 4.6.1-2 [277 kB]
Get: 223 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.2-1 [31.0 kB]
Get: 224 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 225 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-6 [95.1 kB]
Get: 226 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB]
Get: 227 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB]
Get: 228 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB]
Get: 229 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 230 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get: 231 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 232 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get: 233 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB]
Get: 234 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 235 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB]
Get: 236 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 237 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB]
Get: 238 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB]
Get: 239 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 240 http://deb.debian.org/debian unstable/main arm64 python3-pymummer all 0.11.0-4 [18.0 kB]
Get: 241 http://deb.debian.org/debian unstable/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB]
Get: 242 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB]
Fetched 154 MB in 1s (130 MB/s)
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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Setting up libpython3.13-minimal:arm64 (3.13.1-3) ...
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Setting up libkeyutils1:arm64 (1.6.3-4) ...
Setting up libxcb1:arm64 (1.17.0-2+b1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up liblerc4:arm64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-2) ...
Setting up libgpg-error0:arm64 (1.51-3) ...
Setting up libgslcblas0:arm64 (2.8+dfsg-5) ...
Setting up libmurmurhash2:arm64 (1.6-1+b1) ...
Setting up ruby-power-assert (2.0.3-1) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up gawk (1:5.2.1-2+b2) ...
Setting up libxcb-render0:arm64 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:arm64 (0.2.5-2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up fonts-lyx (2.4.3-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:arm64 (1.1.0-2+b6) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up libpython3.12-minimal:arm64 (3.12.8-5) ...
Setting up x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libnghttp2-14:arm64 (1.64.0-1) ...
Setting up libdeflate0:arm64 (1.23-1+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libgcrypt20:arm64 (1.11.0-7) ...
Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ...
Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ...
Setting up libcom-err2:arm64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libfml0:arm64 (0.1+git20221215.85f159e-1) ...
Setting up libjbig0:arm64 (2.1-6.1+b2) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libkrb5support0:arm64 (1.21.3-4) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up tzdata (2025a-1) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Jan 31 16:16:35 UTC 2025.
Universal Time is now: Fri Jan 31 16:16:35 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up unicode-data (15.1.0-1) ...
Setting up ruby-minitest (5.25.4-1) ...
Setting up libminimap0:arm64 (0.2-8+b3) ...
Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:arm64 (3.12.1-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up libexpat1-dev:arm64 (2.6.4-1) ...
Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ...
Setting up ruby-test-unit (3.6.2-1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libncurses6:arm64 (6.5-2+b1) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:arm64 (1.0.16-1) ...
Setting up libimagequant0:arm64 (2.18.0-1+b2) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:arm64 (1.6.46-1) ...
Setting up python3-numpy-dev:arm64 (1:2.2.2+ds-2) ...
Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libk5crypto3:arm64 (1.21.3-4) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:arm64 (14.2.0-16) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:arm64 (1.6.0-2) ...
Setting up libwebp7:arm64 (1.5.0-0.1) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:arm64 (3.4.6-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:arm64 (4.5.1+git230720-5) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up mummer (3.23+dfsg-8+b1) ...
Setting up libtasn1-6:arm64 (4.19.0-3+b3) ...
Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ...
Setting up libx11-6:arm64 (2:1.8.10-2) ...
Setting up netbase (6.4) ...
Setting up libngtcp2-16:arm64 (1.9.1-1) ...
Setting up sgml-base (1.31) ...
Setting up libcapnp-1.1.0:arm64 (1.1.0-2) ...
Setting up libkrb5-3:arm64 (1.21.3-4) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up ruby-did-you-mean (1.6.3-2) ...
Setting up libgsl28:arm64 (2.8+dfsg-5) ...
Setting up python-matplotlib-data (3.8.3-3) ...
Setting up openssl (3.4.0-2) ...
Setting up libwebpmux3:arm64 (1.5.0-0.1) ...
Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ...
Setting up ruby-xmlrpc (0.3.3-2) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libldap2:arm64 (2.6.9+dfsg-1) ...
Setting up liblocale-gettext-perl (1.07-7+b1) ...
Setting up libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libpython3.13:arm64 (3.13.1-3) ...
Setting up automake (1:1.17-2) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up python3.12-minimal (3.12.8-5) ...
Setting up liblapack3:arm64 (3.12.1-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libfml-dev:arm64 (0.1+git20221215.85f159e-1) ...
Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ...
Setting up libtool (2.5.4-2.1) ...
Setting up python3.13 (3.13.1-3) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libwebpdemux2:arm64 (1.5.0-0.1) ...
Setting up libxext6:arm64 (2:1.3.4-1+b3) ...
Setting up python3 (3.13.1-2) ...
Setting up libidn2-0:arm64 (2.3.7-2+b1) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up python3-platformdirs (4.3.6-1) ...
Setting up python3-tz (2024.2-1) ...
Setting up bowtie2 (2.5.4-1+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up python3-fs (2.4.16-6) ...
Setting up help2man (1.49.3+b1) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up python3-decorator (5.1.1-5) ...
Setting up libglib2.0-0t64:arm64 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up python3-packaging (24.2-1) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up python3-brotli (1.1.0-2+b6) ...
Setting up libpython3.13-dev:arm64 (3.13.1-3) ...
Setting up python3-cycler (0.12.1-1) ...
Setting up libp11-kit0:arm64 (0.25.5-3) ...
Setting up python3-kiwisolver (1.4.7-3) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ...
Setting up mash (2.3+dfsg-6+b2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:2.2.2+ds-2) ...
Setting up libminimap-dev:arm64 (0.2-8+b3) ...
Setting up libjs-sphinxdoc (8.1.3-4) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ...
Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-contourpy (1.3.1-1) ...
Setting up libxss1:arm64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:arm64 (2.15.0-2) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up python3-dendropy (4.6.1-2) ...
Setting up python3-soupsieve (2.6-1) ...
Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ...
Setting up libgnutls30t64:arm64 (3.8.8-2) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.13.3-1) ...
Setting up python3-attr (24.3.0-1) ...
Setting up libxft2:arm64 (2.3.6-1+b4) ...
Setting up python3-scipy (1.14.1-4) ...
Setting up libpython3-dev:arm64 (3.13.1-2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Setting up python3-lz4 (4.4.0+dfsg-1) ...
Setting up python3.13-dev (3.13.1-3) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:arm64 (8.6.16-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3.12-tk (3.12.8-5) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up rubygems-integration (1.19) ...
Setting up python3-freetype (2.5.1-1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up python3.13-tk (3.13.1-3) ...
Setting up python3-bs4 (4.12.3-3) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up libraqm0:arm64 (0.10.2-1) ...
Setting up python3-dev (3.13.1-2) ...
Setting up python3-lxml:arm64 (5.3.0-1+b1) ...
Setting up libnsl2:arm64 (1.3.0-3+b3) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ...
Setting up python3-cairo (1.26.1-2+b1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up blt (2.5.3+dfsg-7+b1) ...
Setting up python3.12 (3.12.8-5) ...
Setting up libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ...
Setting up python3-all (3.13.1-2) ...
Setting up python3-tk:arm64 (3.13.1-1) ...
Setting up debhelper (13.24.1) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up libpython3.12t64:arm64 (3.12.8-5) ...
Setting up python3-pil:arm64 (11.1.0-4) ...
Setting up python3-pil.imagetk:arm64 (11.1.0-4) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-reportlab (4.2.5-1) ...
Setting up libhts3t64:arm64 (1.20+ds-2) ...
Setting up dh-python (6.20250108) ...
Setting up python3-pysam (0.22.1+ds-2+b3) ...
Setting up libpython3.12-dev:arm64 (3.12.8-5) ...
Setting up samtools (1.20-3+b1) ...
Setting up libpython3-all-dev:arm64 (3.13.1-2) ...
Setting up python3.12-dev (3.12.8-5) ...
Setting up python3-all-dev (3.13.1-2) ...
Setting up fastaq (3.17.0-9) ...
Setting up python3-pymummer (0.11.0-4) ...
Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
Setting up libruby3.3:arm64 (3.3.7-1) ...
Setting up ruby-rubygems (3.6.3-1) ...
Setting up python3-fonttools (4.55.3-2) ...
Setting up ruby3.3 (3.3.7-1) ...
Setting up python3-matplotlib (3.8.3-3+b2) ...
Setting up libruby:arm64 (1:3.3~3.1) ...
Setting up ruby (1:3.3~3.1) ...
Setting up ruby-asciidoctor (2.0.23-1) ...
Setting up rake (13.2.1-1) ...
Setting up asciidoctor (2.0.23-1) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.85+dfsg-1) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes
dpkg-buildpackage: info: source package ariba
dpkg-buildpackage: info: source version 2.14.7+ds-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds'
rm -rf /build/reproducible-path/ariba-2.14.7+ds/debian/man
dh_auto_clean --
I: pybuild base:311: python3.12 setup.py clean
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running clean
removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running clean
removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
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copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests
copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks
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copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data
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copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data
copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data
copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data
copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
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copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
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copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
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copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
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copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
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copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
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creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
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copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
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copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
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copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
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copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
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copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
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copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
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copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2
copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2
copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
running build_ext
building 'minimap_ariba' extension
creating build/temp.linux-aarch64-cpython-312/ariba/ext
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.12 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/minimap_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/minimap_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/minimap_ariba.cpython-312-aarch64-linux-gnu.so -lz -lminimap
building 'fermilite_ariba' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/fml-asm_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/fml-asm_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/fermilite_ariba.cpython-312-aarch64-linux-gnu.so -lz -lfml
building 'vcfcall_ariba' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/vcfcall_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/vcfcall_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/vcfcall_ariba.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting scripts/ariba -> build/scripts-3.12
changing mode of build/scripts-3.12/ariba from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
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copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
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copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
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copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
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copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
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copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files
copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
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copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2
copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2
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copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1
creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
running build_ext
building 'minimap_ariba' extension
creating build/temp.linux-aarch64-cpython-313/ariba/ext
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.13 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/minimap_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/minimap_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-aarch64-linux-gnu.so -lz -lminimap
building 'fermilite_ariba' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/fml-asm_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/fml-asm_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-aarch64-linux-gnu.so -lz -lfml
building 'vcfcall_ariba' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/vcfcall_ariba.o
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/vcfcall_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/ariba -> build/scripts-3.13
changing mode of build/scripts-3.13/ariba from 644 to 755
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build; python3.12 -m pytest -k "not test_load_fasta_files_and_write_clusters_file"
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/ariba-2.14.7+ds
plugins: typeguard-4.4.1
collected 356 items / 1 deselected / 355 selected
ariba/tests/aln_to_metadata_test.py .................... [ 5%]
ariba/tests/assembly_compare_test.py ................ [ 10%]
ariba/tests/assembly_test.py ..ss..... [ 12%]
ariba/tests/assembly_variants_test.py ........... [ 15%]
ariba/tests/bam_parse_test.py ...... [ 17%]
ariba/tests/card_record_test.py ........ [ 19%]
ariba/tests/cdhit_test.py ................ [ 24%]
ariba/tests/cluster_test.py ............................. [ 32%]
ariba/tests/clusters_test.py ................ [ 36%]
ariba/tests/common_test.py .. [ 37%]
ariba/tests/external_progs_test.py . [ 37%]
ariba/tests/faidx_test.py . [ 38%]
ariba/tests/flag_test.py ....... [ 40%]
ariba/tests/histogram_test.py .... [ 41%]
ariba/tests/link_test.py ......... [ 43%]
ariba/tests/mapping_test.py ....... [ 45%]
ariba/tests/megares_data_finder_test.py .. [ 46%]
ariba/tests/megares_zip_parser_test.py ..... [ 47%]
ariba/tests/mic_plotter_test.py ............. [ 51%]
ariba/tests/mlst_profile_test.py .... [ 52%]
ariba/tests/mlst_reporter_test.py ..... [ 53%]
ariba/tests/pubmlst_getter_test.py ... [ 54%]
ariba/tests/pubmlst_ref_preparer_test.py . [ 54%]
ariba/tests/read_filter_test.py . [ 55%]
ariba/tests/read_store_test.py ....... [ 57%]
ariba/tests/ref_genes_getter_test.py . [ 57%]
ariba/tests/ref_preparer_test.py ..... [ 58%]
ariba/tests/ref_seq_chooser_test.py ....... [ 60%]
ariba/tests/reference_data_test.py .............................. [ 69%]
ariba/tests/report_filter_test.py ................. [ 74%]
ariba/tests/report_flag_expander_test.py . [ 74%]
ariba/tests/samtools_variants_test.py ....... [ 76%]
ariba/tests/scaffold_graph_test.py ..... [ 77%]
ariba/tests/sequence_metadata_test.py ..... [ 79%]
ariba/tests/sequence_variant_test.py ....... [ 81%]
ariba/tests/summary_cluster_test.py ....................... [ 87%]
ariba/tests/summary_cluster_variant_test.py .... [ 88%]
ariba/tests/summary_sample_test.py .... [ 89%]
ariba/tests/summary_test.py .................... [ 95%]
ariba/tests/tb_test.py ....... [ 97%]
ariba/tests/test_refdata_query.py ..... [ 98%]
ariba/tests/versions_test.py . [ 99%]
ariba/tests/vfdb_parser_test.py ... [100%]
=============================== warnings summary ===============================
ariba/__init__.py:1
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution
../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3
/usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'}
__version__ = Distribution().from_name('pyfastaq').version
.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
cmap = cmx.get_cmap(colormap)
.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
cmap = cmx.get_cmap(colormap)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
===== 353 passed, 2 skipped, 1 deselected, 6 warnings in 84.75s (0:01:24) ======
I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/ariba-2.14.7+ds
plugins: typeguard-4.4.1
collected 356 items
ariba/tests/aln_to_metadata_test.py .................... [ 5%]
ariba/tests/assembly_compare_test.py ................ [ 10%]
ariba/tests/assembly_test.py ..ss..... [ 12%]
ariba/tests/assembly_variants_test.py ........... [ 15%]
ariba/tests/bam_parse_test.py ...... [ 17%]
ariba/tests/card_record_test.py ........ [ 19%]
ariba/tests/cdhit_test.py ................ [ 24%]
ariba/tests/cluster_test.py ............................. [ 32%]
ariba/tests/clusters_test.py ................ [ 36%]
ariba/tests/common_test.py .. [ 37%]
ariba/tests/external_progs_test.py . [ 37%]
ariba/tests/faidx_test.py . [ 37%]
ariba/tests/flag_test.py ....... [ 39%]
ariba/tests/histogram_test.py .... [ 41%]
ariba/tests/link_test.py ......... [ 43%]
ariba/tests/mapping_test.py ....... [ 45%]
ariba/tests/megares_data_finder_test.py .. [ 46%]
ariba/tests/megares_zip_parser_test.py ..... [ 47%]
ariba/tests/mic_plotter_test.py ............. [ 51%]
ariba/tests/mlst_profile_test.py .... [ 52%]
ariba/tests/mlst_reporter_test.py ..... [ 53%]
ariba/tests/pubmlst_getter_test.py ... [ 54%]
ariba/tests/pubmlst_ref_preparer_test.py .. [ 55%]
ariba/tests/read_filter_test.py . [ 55%]
ariba/tests/read_store_test.py ....... [ 57%]
ariba/tests/ref_genes_getter_test.py . [ 57%]
ariba/tests/ref_preparer_test.py ..... [ 58%]
ariba/tests/ref_seq_chooser_test.py ....... [ 60%]
ariba/tests/reference_data_test.py .............................. [ 69%]
ariba/tests/report_filter_test.py ................. [ 74%]
ariba/tests/report_flag_expander_test.py . [ 74%]
ariba/tests/samtools_variants_test.py ....... [ 76%]
ariba/tests/scaffold_graph_test.py ..... [ 77%]
ariba/tests/sequence_metadata_test.py ..... [ 79%]
ariba/tests/sequence_variant_test.py ....... [ 81%]
ariba/tests/summary_cluster_test.py ....................... [ 87%]
ariba/tests/summary_cluster_variant_test.py .... [ 88%]
ariba/tests/summary_sample_test.py .... [ 89%]
ariba/tests/summary_test.py .................... [ 95%]
ariba/tests/tb_test.py ....... [ 97%]
ariba/tests/test_refdata_query.py ..... [ 98%]
ariba/tests/versions_test.py . [ 99%]
ariba/tests/vfdb_parser_test.py ... [100%]
=============================== warnings summary ===============================
ariba/__init__.py:1
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution
../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3
/usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'}
__version__ = Distribution().from_name('pyfastaq').version
.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
cmap = cmx.get_cmap(colormap)
.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours
/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
cmap = cmx.get_cmap(colormap)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 354 passed, 2 skipped, 6 warnings in 81.15s (0:01:21) =============
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/ariba/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/vcfcall_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/fermilite_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/minimap_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report_flag_expander.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/vfdb_parser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/refdata_query.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/read_filter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/versions.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mic_plotter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/megares_data_finder.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/faidx.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_preparer.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/tb.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/sequence_metadata.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/reference_data.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report_filter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/read_store.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_cluster.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_sample.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mlst_profile.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mlst_reporter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/histogram.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/clusters.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/samtools_variants.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/flag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/cluster.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/cdhit.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/card_record.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly_variants.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly_compare.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/external_progs.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/link.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/scaffold_graph.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/bam_parse.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mapping.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/sequence_variant.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/test.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/run.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/refquery.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/micplot.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/getref.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/flag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/versions_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/tb_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/link_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/flag_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/common_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/flag.py to flag.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/getref.py to getref.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/micplot.py to micplot.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/refquery.py to refquery.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/run.py to run.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/summary.py to summary.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/test.py to test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/version.py to version.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/common_test.py to common_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/link_test.py to link_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/bam_parse.py to bam_parse.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/card_record.py to card_record.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/cdhit.py to cdhit.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/cluster.py to cluster.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/clusters.py to clusters.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/common.py to common.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/faidx.py to faidx.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/flag.py to flag.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/histogram.py to histogram.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/link.py to link.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/read_filter.py to read_filter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/read_store.py to read_store.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/refdata_query.py to refdata_query.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/reference_data.py to reference_data.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report.py to report.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report_filter.py to report_filter.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary.py to summary.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_sample.py to summary_sample.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb.py to tb.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly.py to assembly.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mapping.py to mapping.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/external_progs.py to external_progs.cpython-312.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/versions.py to versions.cpython-312.pyc
running install_egg_info
running egg_info
creating ariba.egg-info
writing ariba.egg-info/PKG-INFO
writing dependency_links to ariba.egg-info/dependency_links.txt
writing requirements to ariba.egg-info/requires.txt
writing top-level names to ariba.egg-info/top_level.txt
writing manifest file 'ariba.egg-info/SOURCES.txt'
reading manifest file 'ariba.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.h' under directory 'third_party'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'ariba.egg-info/SOURCES.txt'
Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba-2.14.6.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin
copying build/scripts-3.12/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin
changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding
creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc
byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc
running install_egg_info
running egg_info
writing ariba.egg-info/PKG-INFO
writing dependency_links to ariba.egg-info/dependency_links.txt
writing requirements to ariba.egg-info/requires.txt
writing top-level names to ariba.egg-info/top_level.txt
reading manifest file 'ariba.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.h' under directory 'third_party'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'ariba.egg-info/SOURCES.txt'
Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba-2.14.6.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.13/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin
changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds'
mkdir -p /build/reproducible-path/ariba-2.14.7+ds/debian/man
asciidoctor -a docdate='' -b manpage -o /build/reproducible-path/ariba-2.14.7+ds/debian/man/ariba.1 /build/reproducible-path/ariba-2.14.7+ds/debian/ariba.1.adoc
dh_installman --
make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds'
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_arm64.deb'.
dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-7_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-7_arm64.buildinfo
dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-7_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2602871 and its subdirectories
I: Current time: Fri Jan 31 04:22:13 -12 2025
I: pbuilder-time-stamp: 1738340533