I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 17 20:39:33 -12 2026 I: pbuilder-time-stamp: 1771403973 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-1.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: unsupported subcommand dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1592384/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b2bd5484fdb645cba69e3b513a8eab9e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1592384' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VxSFcV82/pbuilderrc_c4Dq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VxSFcV82/b1 --logfile b1/build.log python-bioframe_0.4.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1592384/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 109 MB of archives. After unpacking 523 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.45-1 [273 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b3 [51.6 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.23 [919 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-13 [361 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 95 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-5.1 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-3 [18.5 MB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.3-1 [1501 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-5 [111 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-3 [101 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1.1 [79.7 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.2.3-4 [112 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Fetched 109 MB in 0s (224 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_arm64.deb ... Unpacking python3.13 (3.13.1-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../095-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../096-libopenjp2-7_2.5.0-2+b4_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../097-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../098-libqhull-r8.0_2020.2-6+b2_arm64.deb ... 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Setting up bsdextrautils (2.40.4-1) ... Setting up libgpg-error0:arm64 (1.51-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Feb 18 08:40:06 UTC 2026. Universal Time is now: Wed Feb 18 08:40:06 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.45-1) ... Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-13) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.4.0-2) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.8-5) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b3) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.16-1) ... Setting up python3.12-tk (3.12.8-5) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up python3.13-tk (3.13.1-3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.12.14+ds-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.4-1) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up python3-tk:arm64 (3.13.1-1) ... Setting up debhelper (13.23) ... Setting up python3-pil:arm64 (10.4.0-1.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1.1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-fs (2.4.16-5.1) ... Setting up dh-python (6.20250108) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.4.1 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 4.83s ================== I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.4.1 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 3.96s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/vis.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/extras.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/ops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/schemas.py to schemas.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/resources.py to resources.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/fileops.py to fileops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/stringops.py to stringops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/specs.py to specs.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/construction.py to construction.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/checks.py to checks.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/arrops.py to arrops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/vis.py to vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/ops.py to ops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/extras.py to extras.cpython-312.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/vis.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/extras.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/ops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/schemas.py to schemas.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/resources.py to resources.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/fileops.py to fileops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/stringops.py to stringops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/specs.py to specs.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/construction.py to construction.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/checks.py to checks.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/arrops.py to arrops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/vis.py to vis.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/ops.py to ops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/extras.py to extras.cpython-313.pyc running install_egg_info running egg_info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1592384 and its subdirectories I: Current time: Tue Feb 17 20:41:34 -12 2026 I: pbuilder-time-stamp: 1771404094