I: pbuilder: network access will be disabled during build
I: Current time: Thu Jan 16 03:56:04 +14 2025
I: pbuilder-time-stamp: 1736949364
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [qtltools_1.3.1+dfsg-4.dsc]
I: copying [./qtltools_1.3.1+dfsg.orig.tar.xz]
I: copying [./qtltools_1.3.1+dfsg-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4.dsc: unsupported subcommand
dpkg-source: info: extracting qtltools in qtltools-1.3.1+dfsg
dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking qtltools_1.3.1+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile_config.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/D01_modify_environment starting
debug: Running on codethink02-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jan 15 13:56 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
INVOCATION_ID=ee6cac1181034d37949bef7aa6530668
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=1370897
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uKV4VaIV/pbuilderrc_TE9l --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uKV4VaIV/b2 --logfile b2/build.log qtltools_1.3.1+dfsg-4.dsc'
SUDO_GID=109
SUDO_UID=104
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://192.168.101.4:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19964 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libblas-dev; however:
Package libblas-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however:
Package libboost-iostreams-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however:
Package libboost-program-options-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libeigen3-dev; however:
Package libeigen3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
Package libgsl-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhts-dev; however:
Package libhts-dev is not installed.
pbuilder-satisfydepends-dummy depends on r-mathlib; however:
Package r-mathlib is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-mathlib{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix r-base-core r-base-dev wget
0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded.
Need to get 67.9 MB of archives. After unpacking 399 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-4 [198 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-4 [723 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.23 [90.6 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-4 [1532 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.23 [919 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-6 [196 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 37 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-4 [314 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-6 [10.3 MB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-4 [338 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4 [261 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B]
Get: 52 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-4 [331 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-4 [371 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B]
Get: 55 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.19+dfsg-1 [175 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1 [332 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.11.1-1 [461 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 r-mathlib arm64 4.4.2-1 [2582 kB]
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I: Building the package
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes
dpkg-buildpackage: info: source package qtltools
dpkg-buildpackage: info: source version 1.3.1+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
rm -f debian/upstream.example/examples.tar.xz
dh_auto_clean
make -j12 clean
make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
rm -f obj/*.o bin/QTLtools
make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/
mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/
dh_auto_build
make -j12 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_sequences.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_fasta.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/QTLtools.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_gtf.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_run_analyses.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_bamstat/../common/data.h:19,
from src/mode_bamstat/bamstat_data.h:20,
from src/mode_bamstat/bamstat_read_annotations.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_bamstat/../common/data.h:19,
from src/mode_bamstat/bamstat_data.h:20,
from src/mode_bamstat/bamstat_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_read_blacklist.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/common/data.h:19,
from src/common/data.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_bamstat/../common/data.h:19,
from src/mode_bamstat/bamstat_data.h:20,
from src/mode_bamstat/bamstat_read_bam.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_bamstat/../common/data.h:19,
from src/mode_bamstat/bamstat_data.h:20,
from src/mode_bamstat/bamstat_write_output.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_chunking.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_collapse_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_conditionnal_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_learn_dof.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_learn_beta.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_main.cpp:17:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_nominal_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_permutation_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/mode_cis/cis_read_thresholds.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_correct/../common/data.h:19,
from src/mode_correct/correct_data.h:24,
from src/mode_correct/correct_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_correct/../common/data.h:19,
from src/mode_correct/correct_data.h:24,
from src/mode_correct/correct_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_correct/../common/data.h:19,
from src/mode_correct/correct_data.h:24,
from src/mode_correct/correct_processing.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_correct/../common/data.h:19,
from src/mode_correct/correct_data.h:24,
from src/mode_correct/correct_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_extract/../common/data.h:19,
from src/mode_extract/extract_data.h:20,
from src/mode_extract/extract_managment.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_extract/../common/data.h:19,
from src/mode_extract/extract_data.h:20,
from src/mode_extract/extract_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_extract/../common/data.h:19,
from src/mode_extract/extract_data.h:20,
from src/mode_extract/extract_read_data.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_fdensity/../common/data.h:19,
from src/mode_fdensity/fdensity_data.h:20,
from src/mode_fdensity/fdensity_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_extract/../common/data.h:19,
from src/mode_extract/extract_data.h:20,
from src/mode_extract/extract_write.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_fdensity/../common/data.h:19,
from src/mode_fdensity/fdensity_data.h:20,
from src/mode_fdensity/fdensity_process.cpp:17:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)':
src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result]
127 | bcf_hdr_write(fp, hdr_new);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from lib/OTools/otools.h:56,
from src/mode_fdensity/../common/data.h:19,
from src/mode_fdensity/fdensity_data.h:20,
from src/mode_fdensity/fdensity_read_annotation.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_fdensity/../common/data.h:19,
from src/mode_fdensity/fdensity_data.h:20,
from src/mode_fdensity/fdensity_read_qtl.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_read_annotation.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_process.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_read_qtl.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_fenrich/../common/data.h:19,
from src/mode_fenrich/fenrich_data.h:20,
from src/mode_fenrich/fenrich_read_tss.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_binning_process.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_process.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_read_auxillliary_data.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_read_reference_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_genrich/../common/data.h:19,
from src/mode_genrich/genrich_data.h:22,
from src/mode_genrich/genrich_routines.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_analysis_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_managment.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_gwas/../common/data.h:19,
from src/mode_gwas/gwas_data.h:20,
from src/mode_gwas/gwas_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)':
src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result]
28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_match/../common/data.h:19,
from src/mode_match/match_data.h:20,
from src/mode_match/match_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_match/../common/data.h:19,
from src/mode_match/match_data.h:20,
from src/mode_match/match_managment.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_match/../common/data.h:19,
from src/mode_match/match_data.h:20,
from src/mode_match/match_process.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_match/../common/data.h:19,
from src/mode_match/match_data.h:20,
from src/mode_match/match_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_match/../common/data.h:19,
from src/mode_match/match_data.h:20,
from src/mode_match/match_read_sequences.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_pca/../common/data.h:19,
from src/mode_pca/pca_data.h:22,
from src/mode_pca/pca_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_pca/../common/data.h:19,
from src/mode_pca/pca_data.h:22,
from src/mode_pca/pca_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_pca/../common/data.h:19,
from src/mode_pca/pca_pca.h:22,
from src/mode_pca/pca_pca.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_pca/../common/data.h:19,
from src/mode_pca/pca_data.h:22,
from src/mode_pca/pca_read_data.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readBAM.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_readGTF.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_writeResults.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_quan/../common/data.h:19,
from src/mode_quan/quan_data.h:21,
from src/mode_quan/quan_xxhash.cpp:109:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_nominal_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from src/mode_pca/pca_pca.h:21:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rep/../common/data.h:19,
from src/mode_rep/rep_data.h:31,
from src/mode_rep/rep_read_qtls.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_chunking.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_collapse_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_common.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_gwas_cis.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_gwas_trans.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_mergeQTL_cis.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_mergeQTL_trans.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_read_get_hotspots.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_rtc/../common/data.h:19,
from src/mode_rtc/rtc_data.h:36,
from src/mode_rtc/rtc_sampling.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_adjust.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_analysis_pass.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_chunking.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_learn_beta.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_managment.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_trans/../common/data.h:19,
from src/mode_trans/trans_data.h:26,
from src/mode_trans/trans_read_samples.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_initilization.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_main.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_read_covariates.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_management.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_read_genotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_read_phenotypes.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_read_get_hotspots.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from lib/OTools/otools.h:56,
from src/mode_union/../common/data.h:19,
from src/mode_union/union_data.h:20,
from src/mode_union/union_union.cpp:16:
lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
76 | IntervalTree<T,K>(void)
| ^
lib/OTools/interval_tree.h:76:22: note: remove the '< >'
lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
82 | IntervalTree<T,K>(const intervalTree& other) {
| ^
lib/OTools/interval_tree.h:82:22: note: remove the '< >'
lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
118 | intervalVector& ivals,
| ^~~~~~~~~~~~~~
lib/OTools/interval_tree.h:118:13: note: remove the '< >'
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Core:341,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=c++0x obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
make -j12 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d
install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 755 scripts/qtltools_runFDR_atrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_ftrans.R scripts/qtltools_runFDR_cis.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 644 doc/QTLtools-gwas.1 doc/QTLtools-bamstat.1 doc/QTLtools-pca.1 doc/QTLtools-cis.1 doc/QTLtools-quan.1 doc/QTLtools-fdensity.1 doc/QTLtools-rtc.1 doc/QTLtools-trans.1 doc/QTLtools-mbv.1 doc/QTLtools-rep.1 doc/QTLtools-fenrich.1 doc/QTLtools-extract.1 doc/QTLtools.1 doc/QTLtools-correct.1 doc/QTLtools-rtc-union.1 doc/QTLtools-ase.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1
install: WARNING: ignoring --strip-program option as -s option was not specified
install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d
install: WARNING: ignoring --strip-program option as -s option was not specified
make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \
tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
./genes.50percent.chr22.bed.gz
./genes.50percent.chr22.bed.gz.tbi
./genes.covariates.pc50.txt.gz
./genes.simulated.chr22.bed.gz
./genes.simulated.chr22.bed.gz.tbi
./genotypes.chr22.vcf.gz
./genotypes.chr22.vcf.gz.tbi
dh_install
make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols)
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'.
dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_arm64.deb'.
dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-4_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../qtltools_1.3.1+dfsg-4_arm64.buildinfo
dpkg-genchanges --build=binary -O../qtltools_1.3.1+dfsg-4_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/1370897/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1370897 and its subdirectories
I: Current time: Thu Jan 16 04:15:57 +14 2025
I: pbuilder-time-stamp: 1736950557