I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 19:44:59 -12 2025 I: pbuilder-time-stamp: 1740210299 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ea6eaba0a4d248028af87dd849c9037e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='718479' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_i85u --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libedlib1 arm64 1.2.7-6+b2 [17.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libedlib-dev arm64 1.2.7-6+b2 [22.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 40.1 MB in 0s (141 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (12 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000791 s [racon::Polisher::initialize] loaded sequences 0.046262 s [racon::Polisher::initialize] loaded overlaps 0.000287 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.060479 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.073832 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.084330 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.095629 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103289 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109152 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131272 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141718 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149863 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157040 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167057 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.185139 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.191075 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.223488 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.229463 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.235035 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240328 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247800 s [racon::Polisher::initialize] transformed data into windows 0.003932 s [racon::Polisher::polish] generating consensus [=> ] 0.045717 s [racon::Polisher::polish] generating consensus [==> ] 0.075384 s [racon::Polisher::polish] generating consensus [===> ] 0.100447 s [racon::Polisher::polish] generating consensus [====> ] 0.114890 s [racon::Polisher::polish] generating consensus [=====> ] 0.127197 s [racon::Polisher::polish] generating consensus [======> ] 0.137768 s [racon::Polisher::polish] generating consensus [=======> ] 0.147735 s [racon::Polisher::polish] generating consensus [========> ] 0.159436 s [racon::Polisher::polish] generating consensus [=========> ] 0.174616 s [racon::Polisher::polish] generating consensus [==========> ] 0.191343 s [racon::Polisher::polish] generating consensus [===========> ] 0.219886 s [racon::Polisher::polish] generating consensus [============> ] 0.255659 s [racon::Polisher::polish] generating consensus [=============> ] 0.303597 s [racon::Polisher::polish] generating consensus [==============> ] 0.350419 s [racon::Polisher::polish] generating consensus [===============> ] 0.383766 s [racon::Polisher::polish] generating consensus [================> ] 0.407768 s [racon::Polisher::polish] generating consensus [=================> ] 0.438421 s [racon::Polisher::polish] generating consensus [==================> ] 0.456098 s [racon::Polisher::polish] generating consensus [===================>] 0.480001 s [racon::Polisher::polish] generating consensus [====================] 0.557544 s [racon::Polisher::] total = 0.883083 s [ OK ] RaconPolishingTest.ConsensusWithQualities (892 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000893 s [racon::Polisher::initialize] loaded sequences 0.026524 s [racon::Polisher::initialize] loaded overlaps 0.000392 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041088 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060438 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078859 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089895 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102585 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112877 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.135021 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.145006 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.153158 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.160289 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.170231 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.178818 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188182 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.192871 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199235 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.204523 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.209056 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.221121 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.234952 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243686 s [racon::Polisher::initialize] transformed data into windows 0.000626 s [racon::Polisher::polish] generating consensus [=> ] 0.026950 s [racon::Polisher::polish] generating consensus [==> ] 0.057368 s [racon::Polisher::polish] generating consensus [===> ] 0.081280 s [racon::Polisher::polish] generating consensus [====> ] 0.100669 s [racon::Polisher::polish] generating consensus [=====> ] 0.115124 s [racon::Polisher::polish] generating consensus [======> ] 0.128685 s [racon::Polisher::polish] generating consensus [=======> ] 0.145532 s [racon::Polisher::polish] generating consensus [========> ] 0.159916 s [racon::Polisher::polish] generating consensus [=========> ] 0.177078 s [racon::Polisher::polish] generating consensus [==========> ] 0.205912 s [racon::Polisher::polish] generating consensus [===========> ] 0.240562 s [racon::Polisher::polish] generating consensus [============> ] 0.282587 s [racon::Polisher::polish] generating consensus [=============> ] 0.343494 s [racon::Polisher::polish] generating consensus [==============> ] 0.389080 s [racon::Polisher::polish] generating consensus [===============> ] 0.433744 s [racon::Polisher::polish] generating consensus [================> ] 0.477599 s [racon::Polisher::polish] generating consensus [=================> ] 0.520298 s [racon::Polisher::polish] generating consensus [==================> ] 0.545129 s [racon::Polisher::polish] generating consensus [===================>] 0.573858 s [racon::Polisher::polish] generating consensus [====================] 0.739476 s [racon::Polisher::] total = 1.020402 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1031 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000364 s [racon::Polisher::initialize] loaded sequences 0.026442 s [racon::Polisher::initialize] loaded overlaps 0.015661 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.005136 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005336 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005596 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005947 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006119 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006321 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006605 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007086 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007214 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007395 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007660 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008138 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008306 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008627 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008749 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008941 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008947 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009036 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009121 s [racon::Polisher::initialize] transformed data into windows 0.001393 s [racon::Polisher::polish] generating consensus [=> ] 0.056754 s [racon::Polisher::polish] generating consensus [==> ] 0.091025 s [racon::Polisher::polish] generating consensus [===> ] 0.119195 s [racon::Polisher::polish] generating consensus [====> ] 0.136169 s [racon::Polisher::polish] generating consensus [=====> ] 0.145958 s [racon::Polisher::polish] generating consensus [======> ] 0.156117 s [racon::Polisher::polish] generating consensus [=======> ] 0.166340 s [racon::Polisher::polish] generating consensus [========> ] 0.178094 s [racon::Polisher::polish] generating consensus [=========> ] 0.191489 s [racon::Polisher::polish] generating consensus [==========> ] 0.209909 s [racon::Polisher::polish] generating consensus [===========> ] 0.235358 s [racon::Polisher::polish] generating consensus [============> ] 0.269894 s [racon::Polisher::polish] generating consensus [=============> ] 0.316051 s [racon::Polisher::polish] generating consensus [==============> ] 0.363253 s [racon::Polisher::polish] generating consensus [===============> ] 0.404499 s [racon::Polisher::polish] generating consensus [================> ] 0.429487 s [racon::Polisher::polish] generating consensus [=================> ] 0.463146 s [racon::Polisher::polish] generating consensus [==================> ] 0.503539 s [racon::Polisher::polish] generating consensus [===================>] 0.522655 s [racon::Polisher::polish] generating consensus [====================] 0.570208 s [racon::Polisher::] total = 0.649323 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (654 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000756 s [racon::Polisher::initialize] loaded sequences 0.024615 s [racon::Polisher::initialize] loaded overlaps 0.026898 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.003235 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003464 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003755 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003989 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004162 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004346 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004707 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005256 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005438 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005702 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006014 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006022 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006138 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.006176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.006184 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.006190 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006223 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006371 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006378 s [racon::Polisher::initialize] transformed data into windows 0.000447 s [racon::Polisher::polish] generating consensus [=> ] 0.060231 s [racon::Polisher::polish] generating consensus [==> ] 0.101675 s [racon::Polisher::polish] generating consensus [===> ] 0.132404 s [racon::Polisher::polish] generating consensus [====> ] 0.150696 s [racon::Polisher::polish] generating consensus [=====> ] 0.163872 s [racon::Polisher::polish] generating consensus [======> ] 0.176439 s [racon::Polisher::polish] generating consensus [=======> ] 0.189785 s [racon::Polisher::polish] generating consensus [========> ] 0.206100 s [racon::Polisher::polish] generating consensus [=========> ] 0.222434 s [racon::Polisher::polish] generating consensus [==========> ] 0.247208 s [racon::Polisher::polish] generating consensus [===========> ] 0.278408 s [racon::Polisher::polish] generating consensus [============> ] 0.318029 s [racon::Polisher::polish] generating consensus [=============> ] 0.367735 s [racon::Polisher::polish] generating consensus [==============> ] 0.419010 s [racon::Polisher::polish] generating consensus [===============> ] 0.459028 s [racon::Polisher::polish] generating consensus [================> ] 0.499995 s [racon::Polisher::polish] generating consensus [=================> ] 0.542554 s [racon::Polisher::polish] generating consensus [==================> ] 0.564019 s [racon::Polisher::polish] generating consensus [===================>] 0.588650 s [racon::Polisher::polish] generating consensus [====================] 0.719401 s [racon::Polisher::] total = 0.795738 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (797 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000971 s [racon::Polisher::initialize] loaded sequences 0.052791 s [racon::Polisher::initialize] loaded overlaps 0.000302 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042002 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057804 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.069804 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.083473 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.091296 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.096727 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.113946 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.136323 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148017 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.167779 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183909 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186775 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.201396 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207637 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.229118 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.233144 s [racon::Polisher::initialize] aligning overlaps [====================] 0.240492 s [racon::Polisher::initialize] transformed data into windows 0.001302 s [racon::Polisher::polish] generating consensus [=> ] 0.091651 s [racon::Polisher::polish] generating consensus [==> ] 0.096599 s [racon::Polisher::polish] generating consensus [===> ] 0.172270 s [racon::Polisher::polish] generating consensus [====> ] 0.172638 s [racon::Polisher::polish] generating consensus [=====> ] 0.212643 s [racon::Polisher::polish] generating consensus [======> ] 0.212673 s [racon::Polisher::polish] generating consensus [=======> ] 0.246186 s [racon::Polisher::polish] generating consensus [========> ] 0.246232 s [racon::Polisher::polish] generating consensus [=========> ] 0.303999 s [racon::Polisher::polish] generating consensus [==========> ] 0.319187 s [racon::Polisher::polish] generating consensus [===========> ] 0.407179 s [racon::Polisher::polish] generating consensus [============> ] 0.439006 s [racon::Polisher::polish] generating consensus [=============> ] 0.588171 s [racon::Polisher::polish] generating consensus [==============> ] 0.611382 s [racon::Polisher::polish] generating consensus [===============> ] 0.702385 s [racon::Polisher::polish] generating consensus [================> ] 0.714545 s [racon::Polisher::polish] generating consensus [=================> ] 0.803576 s [racon::Polisher::polish] generating consensus [==================> ] 0.803611 s [racon::Polisher::polish] generating consensus [===================>] 0.887524 s [racon::Polisher::polish] generating consensus [====================] 1.065365 s [racon::Polisher::] total = 1.385889 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1406 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000974 s [racon::Polisher::initialize] loaded sequences 0.057574 s [racon::Polisher::initialize] loaded overlaps 0.000322 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.043961 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088999 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097979 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.121719 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.135836 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139772 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147231 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.157089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169116 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.175588 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183882 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194935 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214534 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219294 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226961 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.235017 s [racon::Polisher::initialize] aligning overlaps [====================] 0.242914 s [racon::Polisher::initialize] transformed data into windows 0.001630 s [racon::Polisher::polish] generating consensus [=> ] 0.023711 s [racon::Polisher::polish] generating consensus [==> ] 0.045684 s [racon::Polisher::polish] generating consensus [===> ] 0.063741 s [racon::Polisher::polish] generating consensus [====> ] 0.094175 s [racon::Polisher::polish] generating consensus [=====> ] 0.101293 s [racon::Polisher::polish] generating consensus [======> ] 0.112267 s [racon::Polisher::polish] generating consensus [=======> ] 0.122535 s [racon::Polisher::polish] generating consensus [========> ] 0.132583 s [racon::Polisher::polish] generating consensus [=========> ] 0.141723 s [racon::Polisher::polish] generating consensus [==========> ] 0.165575 s [racon::Polisher::polish] generating consensus [===========> ] 0.188876 s [racon::Polisher::polish] generating consensus [============> ] 0.222616 s [racon::Polisher::polish] generating consensus [=============> ] 0.263754 s [racon::Polisher::polish] generating consensus [==============> ] 0.305643 s [racon::Polisher::polish] generating consensus [===============> ] 0.341705 s [racon::Polisher::polish] generating consensus [================> ] 0.365316 s [racon::Polisher::polish] generating consensus [=================> ] 0.396710 s [racon::Polisher::polish] generating consensus [==================> ] 0.415443 s [racon::Polisher::polish] generating consensus [===================>] 0.434070 s [racon::Polisher::polish] generating consensus [====================] 0.516301 s [racon::Polisher::] total = 0.844289 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (846 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.060722 s [racon::Polisher::initialize] loaded sequences 0.035801 s [racon::Polisher::initialize] loaded overlaps 0.008053 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042604 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057074 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.071610 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.099948 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102742 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.117723 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125767 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138175 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148449 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176603 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188368 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202456 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.211331 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226119 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235316 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.242742 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.246943 s [racon::Polisher::initialize] aligning overlaps [====================] 0.261708 s [racon::Polisher::initialize] transformed data into windows 0.006764 s [racon::Polisher::polish] generating consensus [=> ] 0.021947 s [racon::Polisher::polish] generating consensus [==> ] 0.043407 s [racon::Polisher::polish] generating consensus [===> ] 0.064685 s [racon::Polisher::polish] generating consensus [====> ] 0.064920 s [racon::Polisher::polish] generating consensus [=====> ] 0.080052 s [racon::Polisher::polish] generating consensus [======> ] 0.090056 s [racon::Polisher::polish] generating consensus [=======> ] 0.104541 s [racon::Polisher::polish] generating consensus [========> ] 0.107985 s [racon::Polisher::polish] generating consensus [=========> ] 0.135573 s [racon::Polisher::polish] generating consensus [==========> ] 0.147698 s [racon::Polisher::polish] generating consensus [===========> ] 0.158353 s [racon::Polisher::polish] generating consensus [============> ] 0.162285 s [racon::Polisher::polish] generating consensus [=============> ] 0.174523 s [racon::Polisher::polish] generating consensus [==============> ] 0.174842 s [racon::Polisher::polish] generating consensus [===============> ] 0.202885 s [racon::Polisher::polish] generating consensus [================> ] 0.203059 s [racon::Polisher::polish] generating consensus [=================> ] 0.254369 s [racon::Polisher::polish] generating consensus [==================> ] 0.272748 s [racon::Polisher::polish] generating consensus [===================>] 0.285411 s [racon::Polisher::polish] generating consensus [====================] 0.287409 s [racon::Polisher::] total = 0.660924 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (662 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.026237 s [racon::Polisher::initialize] loaded sequences 0.026146 s [racon::Polisher::initialize] loaded overlaps 0.006938 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.297599 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.455676 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.600339 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.812442 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.001310 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.131576 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.307790 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.535242 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743675 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953140 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.113943 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.342298 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.573651 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.763636 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029707 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.271737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484105 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.712026 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967078 s [racon::Polisher::initialize] aligning overlaps [====================] 4.156447 s [racon::Polisher::initialize] transformed data into windows 0.085425 s [racon::Polisher::polish] generating consensus [=> ] 0.968043 s [racon::Polisher::polish] generating consensus [==> ] 1.648972 s [racon::Polisher::polish] generating consensus [===> ] 2.380784 s [racon::Polisher::polish] generating consensus [====> ] 2.983465 s [racon::Polisher::polish] generating consensus [=====> ] 3.637553 s [racon::Polisher::polish] generating consensus [======> ] 4.405981 s [racon::Polisher::polish] generating consensus [=======> ] 5.183578 s [racon::Polisher::polish] generating consensus [========> ] 5.747647 s [racon::Polisher::polish] generating consensus [=========> ] 6.489451 s [racon::Polisher::polish] generating consensus [==========> ] 7.349881 s [racon::Polisher::polish] generating consensus [===========> ] 8.058886 s [racon::Polisher::polish] generating consensus [============> ] 8.844954 s [racon::Polisher::polish] generating consensus [=============> ] 9.517978 s [racon::Polisher::polish] generating consensus [==============> ] 10.243179 s [racon::Polisher::polish] generating consensus [===============> ] 11.032924 s [racon::Polisher::polish] generating consensus [================> ] 11.464666 s [racon::Polisher::polish] generating consensus [=================> ] 12.343865 s [racon::Polisher::polish] generating consensus [==================> ] 13.165659 s [racon::Polisher::polish] generating consensus [===================>] 13.951403 s [racon::Polisher::polish] generating consensus [====================] 14.457003 s [racon::Polisher::] total = 18.762415 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18763 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.015531 s [racon::Polisher::initialize] loaded sequences 0.013416 s [racon::Polisher::initialize] loaded overlaps 0.007848 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.260923 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.430366 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.588310 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.801870 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.990732 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.117775 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.294546 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.521845 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.729655 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.941314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.100458 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.329171 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.561103 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.751367 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.018052 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.260189 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472132 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.699973 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.938719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143906 s [racon::Polisher::initialize] transformed data into windows 0.011485 s [racon::Polisher::polish] generating consensus [=> ] 1.267138 s [racon::Polisher::polish] generating consensus [==> ] 2.251257 s [racon::Polisher::polish] generating consensus [===> ] 3.224598 s [racon::Polisher::polish] generating consensus [====> ] 3.963828 s [racon::Polisher::polish] generating consensus [=====> ] 4.852840 s [racon::Polisher::polish] generating consensus [======> ] 5.833324 s [racon::Polisher::polish] generating consensus [=======> ] 6.886296 s [racon::Polisher::polish] generating consensus [========> ] 7.647147 s [racon::Polisher::polish] generating consensus [=========> ] 8.651785 s [racon::Polisher::polish] generating consensus [==========> ] 9.820590 s [racon::Polisher::polish] generating consensus [===========> ] 10.781640 s [racon::Polisher::polish] generating consensus [============> ] 11.840948 s [racon::Polisher::polish] generating consensus [=============> ] 12.827738 s [racon::Polisher::polish] generating consensus [==============> ] 13.832092 s [racon::Polisher::polish] generating consensus [===============> ] 14.830374 s [racon::Polisher::polish] generating consensus [================> ] 15.372688 s [racon::Polisher::polish] generating consensus [=================> ] 16.693851 s [racon::Polisher::polish] generating consensus [==================> ] 17.856922 s [racon::Polisher::polish] generating consensus [===================>] 18.875561 s [racon::Polisher::polish] generating consensus [====================] 19.775223 s [racon::Polisher::] total = 23.969221 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (23970 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.067877 s [racon::Polisher::initialize] loaded sequences 0.038218 s [racon::Polisher::initialize] loaded overlaps 0.007465 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.294096 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452436 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.606030 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819137 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003908 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.133578 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.308946 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.534467 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.741822 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.950560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.110716 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.338437 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.569025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.760533 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.023102 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.264084 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.474654 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709227 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.969885 s [racon::Polisher::initialize] aligning overlaps [====================] 4.171119 s [racon::Polisher::initialize] transformed data into windows 0.111243 s [racon::Polisher::polish] generating consensus [=> ] 0.979338 s [racon::Polisher::polish] generating consensus [==> ] 1.655764 s [racon::Polisher::polish] generating consensus [===> ] 2.373849 s [racon::Polisher::polish] generating consensus [====> ] 2.964068 s [racon::Polisher::polish] generating consensus [=====> ] 3.606440 s [racon::Polisher::polish] generating consensus [======> ] 4.361442 s [racon::Polisher::polish] generating consensus [=======> ] 5.124835 s [racon::Polisher::polish] generating consensus [========> ] 5.679185 s [racon::Polisher::polish] generating consensus [=========> ] 6.393159 s [racon::Polisher::polish] generating consensus [==========> ] 7.233715 s [racon::Polisher::polish] generating consensus [===========> ] 7.932189 s [racon::Polisher::polish] generating consensus [============> ] 8.697083 s [racon::Polisher::polish] generating consensus [=============> ] 9.362602 s [racon::Polisher::polish] generating consensus [==============> ] 10.076029 s [racon::Polisher::polish] generating consensus [===============> ] 10.853037 s [racon::Polisher::polish] generating consensus [================> ] 11.277530 s [racon::Polisher::polish] generating consensus [=================> ] 12.135240 s [racon::Polisher::polish] generating consensus [==================> ] 12.939017 s [racon::Polisher::polish] generating consensus [===================>] 13.710610 s [racon::Polisher::polish] generating consensus [====================] 14.313247 s [racon::Polisher::] total = 18.718000 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18719 ms) [----------] 10 tests from RaconPolishingTest (67745 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (67758 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/718479 and its subdirectories I: Current time: Fri Feb 21 19:46:48 -12 2025 I: pbuilder-time-stamp: 1740210408