I: pbuilder: network access will be disabled during build
I: Current time: Fri Jan 31 07:36:32 +14 2025
I: pbuilder-time-stamp: 1738258592
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [tandem-mass_201702011-1.dsc]
I: copying [./tandem-mass_201702011.orig.tar.gz]
I: copying [./tandem-mass_201702011-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./tandem-mass_201702011-1.dsc: unsupported subcommand
dpkg-source: info: extracting tandem-mass in tandem-mass-201702011
dpkg-source: info: unpacking tandem-mass_201702011.orig.tar.gz
dpkg-source: info: unpacking tandem-mass_201702011-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-makefile
dpkg-source: info: applying fix-missing-include-string-h
dpkg-source: info: applying nullptr-fixes
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/D01_modify_environment starting
debug: Running on codethink04-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jan 30 17:36 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
INVOCATION_ID=c286c326c5e14253a64e9eae19bdade2
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=3010494
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xgELJfzN/pbuilderrc_WrTo --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xgELJfzN/b2 --logfile b2/build.log tandem-mass_201702011-1.dsc'
SUDO_GID=109
SUDO_UID=104
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://192.168.101.4:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 9.20151219), dpkg-dev (>= 1.16.1~), libexpat1-dev (>= 2.0.1)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 9.20151219); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on libexpat1-dev (>= 2.0.1); however:
Package libexpat1-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.3 MB of archives. After unpacking 81.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-2 [861 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2.1 [539 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Fetched 20.3 MB in 0s (146 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
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(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.4-2_arm64.deb ...
Unpacking bsdextrautils (2.40.4-2) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-5_arm64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.17-2_all.deb ...
Unpacking automake (1:1.17-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.5.4-2.1_all.deb ...
Unpacking libtool (2.5.4-2.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.14.1-1) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:arm64.
Preparing to unpack .../23-libunistring5_1.3-1_arm64.deb ...
Unpacking libunistring5:arm64 (1.3-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../24-libicu72_72.1-6_arm64.deb ...
Unpacking libicu72:arm64 (72.1-6) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ...
Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libexpat1:arm64.
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Unpacking libexpat1:arm64 (2.6.4-1) ...
Selecting previously unselected package libexpat1-dev:arm64.
Preparing to unpack .../31-libexpat1-dev_2.6.4-1_arm64.deb ...
Unpacking libexpat1-dev:arm64 (2.6.4-1) ...
Setting up libexpat1:arm64 (2.6.4-1) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-2) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libexpat1-dev:arm64 (2.6.4-1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.17-2) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-2.1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.37-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/tandem-mass-201702011/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tandem-mass_201702011-1_source.changes
dpkg-buildpackage: info: source package tandem-mass
dpkg-buildpackage: info: source version 1:201702011-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Filippo Rusconi <lopippo@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh_testdir
dh_testroot
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use)
rm -f -- debian/tandem-mass.substvars debian/files
rm -fr -- debian/tandem-mass/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
rm -f bin/tandem
rm -f src/*.d src/*.o
rm -f build-stamp
debian/rules binary
dh_testdir
dh_prep
rm -f -- debian/tandem-mass.substvars
rm -fr -- debian/.debhelper/generated/tandem-mass/ debian/tandem-mass/ debian/tmp/
dh_auto_build --sourcedirectory=src --buildsystem=makefile -- -f Makefile_ubuntu
dh_auto_build: warning: Compatibility levels before 10 are deprecated (level 9 in use)
cd src && make -j1 -f Makefile_ubuntu
make[1]: Entering directory '/build/reproducible-path/tandem-mass-201702011/src'
g++ -M -g -w -O2 MSNumpress.cpp > MSNumpress.d
g++ -M -g -w -O2 MSNumpress.cpp | sed s/\\.o/.d/ > MSNumpress.d
g++ -M -g -w -O2 base64.cpp > base64.d
g++ -M -g -w -O2 base64.cpp | sed s/\\.o/.d/ > base64.d
g++ -M -g -w -O2 loadmspectrum.cpp > loadmspectrum.d
g++ -M -g -w -O2 loadmspectrum.cpp | sed s/\\.o/.d/ > loadmspectrum.d
g++ -M -g -w -O2 masscalc.cpp > masscalc.d
g++ -M -g -w -O2 masscalc.cpp | sed s/\\.o/.d/ > masscalc.d
g++ -M -g -w -O2 mbiomlreport.cpp > mbiomlreport.d
g++ -M -g -w -O2 mbiomlreport.cpp | sed s/\\.o/.d/ > mbiomlreport.d
g++ -M -g -w -O2 mpam.cpp > mpam.d
g++ -M -g -w -O2 mpam.cpp | sed s/\\.o/.d/ > mpam.d
g++ -M -g -w -O2 mplugin.cpp > mplugin.d
g++ -M -g -w -O2 mplugin.cpp | sed s/\\.o/.d/ > mplugin.d
g++ -M -g -w -O2 mpmods.cpp > mpmods.d
g++ -M -g -w -O2 mpmods.cpp | sed s/\\.o/.d/ > mpmods.d
g++ -M -g -w -O2 mprocess.cpp > mprocess.d
g++ -M -g -w -O2 mprocess.cpp | sed s/\\.o/.d/ > mprocess.d
g++ -M -g -w -O2 mrefine.cpp > mrefine.d
g++ -M -g -w -O2 mrefine.cpp | sed s/\\.o/.d/ > mrefine.d
g++ -M -g -w -O2 mreport.cpp > mreport.d
g++ -M -g -w -O2 mreport.cpp | sed s/\\.o/.d/ > mreport.d
g++ -M -g -w -O2 mscore.cpp > mscore.d
g++ -M -g -w -O2 mscore.cpp | sed s/\\.o/.d/ > mscore.d
g++ -M -g -w -O2 mscore_tandem.cpp > mscore_tandem.d
g++ -M -g -w -O2 mscore_tandem.cpp | sed s/\\.o/.d/ > mscore_tandem.d
g++ -M -g -w -O2 msequencecollection.cpp > msequencecollection.d
g++ -M -g -w -O2 msequencecollection.cpp | sed s/\\.o/.d/ > msequencecollection.d
g++ -M -g -w -O2 msequenceserver.cpp > msequenceserver.d
g++ -M -g -w -O2 msequenceserver.cpp | sed s/\\.o/.d/ > msequenceserver.d
g++ -M -g -w -O2 msequtilities.cpp > msequtilities.d
g++ -M -g -w -O2 msequtilities.cpp | sed s/\\.o/.d/ > msequtilities.d
g++ -M -g -w -O2 mspectrumcondition.cpp > mspectrumcondition.d
g++ -M -g -w -O2 mspectrumcondition.cpp | sed s/\\.o/.d/ > mspectrumcondition.d
g++ -M -g -w -O2 mtermmods.cpp > mtermmods.d
g++ -M -g -w -O2 mtermmods.cpp | sed s/\\.o/.d/ > mtermmods.d
g++ -M -g -w -O2 mxxcleavage.cpp > mxxcleavage.d
g++ -M -g -w -O2 mxxcleavage.cpp | sed s/\\.o/.d/ > mxxcleavage.d
g++ -M -g -w -O2 mzid_report.cpp > mzid_report.d
g++ -M -g -w -O2 mzid_report.cpp | sed s/\\.o/.d/ > mzid_report.d
g++ -M -g -w -O2 p3.cpp > p3.d
g++ -M -g -w -O2 p3.cpp | sed s/\\.o/.d/ > p3.d
g++ -M -g -w -O2 p3mprocess.cpp > p3mprocess.d
g++ -M -g -w -O2 p3mprocess.cpp | sed s/\\.o/.d/ > p3mprocess.d
g++ -M -g -w -O2 p3msequenceserver.cpp > p3msequenceserver.d
g++ -M -g -w -O2 p3msequenceserver.cpp | sed s/\\.o/.d/ > p3msequenceserver.d
g++ -M -g -w -O2 saxbiomlhandler.cpp > saxbiomlhandler.d
g++ -M -g -w -O2 saxbiomlhandler.cpp | sed s/\\.o/.d/ > saxbiomlhandler.d
g++ -M -g -w -O2 saxgamlhandler.cpp > saxgamlhandler.d
g++ -M -g -w -O2 saxgamlhandler.cpp | sed s/\\.o/.d/ > saxgamlhandler.d
g++ -M -g -w -O2 saxhandler.cpp > saxhandler.d
g++ -M -g -w -O2 saxhandler.cpp | sed s/\\.o/.d/ > saxhandler.d
g++ -M -g -w -O2 saxmodhandler.cpp > saxmodhandler.d
g++ -M -g -w -O2 saxmodhandler.cpp | sed s/\\.o/.d/ > saxmodhandler.d
g++ -M -g -w -O2 saxmzdatahandler.cpp > saxmzdatahandler.d
g++ -M -g -w -O2 saxmzdatahandler.cpp | sed s/\\.o/.d/ > saxmzdatahandler.d
g++ -M -g -w -O2 saxmzmlhandler.cpp > saxmzmlhandler.d
g++ -M -g -w -O2 saxmzmlhandler.cpp | sed s/\\.o/.d/ > saxmzmlhandler.d
g++ -M -g -w -O2 saxmzxmlhandler.cpp > saxmzxmlhandler.d
g++ -M -g -w -O2 saxmzxmlhandler.cpp | sed s/\\.o/.d/ > saxmzxmlhandler.d
g++ -M -g -w -O2 saxsaphandler.cpp > saxsaphandler.d
g++ -M -g -w -O2 saxsaphandler.cpp | sed s/\\.o/.d/ > saxsaphandler.d
g++ -M -g -w -O2 saxtandeminputhandler.cpp > saxtandeminputhandler.d
g++ -M -g -w -O2 saxtandeminputhandler.cpp | sed s/\\.o/.d/ > saxtandeminputhandler.d
g++ -M -g -w -O2 saxtaxhandler.cpp > saxtaxhandler.d
g++ -M -g -w -O2 saxtaxhandler.cpp | sed s/\\.o/.d/ > saxtaxhandler.d
g++ -M -g -w -O2 stdafx.cpp > stdafx.d
g++ -M -g -w -O2 stdafx.cpp | sed s/\\.o/.d/ > stdafx.d
g++ -M -g -w -O2 tandem.cpp > tandem.d
g++ -M -g -w -O2 tandem.cpp | sed s/\\.o/.d/ > tandem.d
g++ -M -g -w -O2 xmlparameter.cpp > xmlparameter.d
g++ -M -g -w -O2 xmlparameter.cpp | sed s/\\.o/.d/ > xmlparameter.d
g++ -M -g -w -O2 xmltaxonomy.cpp > xmltaxonomy.d
g++ -M -g -w -O2 xmltaxonomy.cpp | sed s/\\.o/.d/ > xmltaxonomy.d
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o MSNumpress.o MSNumpress.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o base64.o base64.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadmspectrum.o loadmspectrum.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o masscalc.o masscalc.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbiomlreport.o mbiomlreport.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpam.o mpam.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mplugin.o mplugin.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpmods.o mpmods.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mprocess.o mprocess.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrefine.o mrefine.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mreport.o mreport.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore.o mscore.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore_tandem.o mscore_tandem.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequencecollection.o msequencecollection.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequenceserver.o msequenceserver.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequtilities.o msequtilities.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mspectrumcondition.o mspectrumcondition.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mtermmods.o mtermmods.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mxxcleavage.o mxxcleavage.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mzid_report.o mzid_report.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3.o p3.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3mprocess.o p3mprocess.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3msequenceserver.o p3msequenceserver.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxbiomlhandler.o saxbiomlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxgamlhandler.o saxgamlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxhandler.o saxhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmodhandler.o saxmodhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzdatahandler.o saxmzdatahandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzmlhandler.o saxmzmlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzxmlhandler.o saxmzxmlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxsaphandler.o saxsaphandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtandeminputhandler.o saxtandeminputhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtaxhandler.o saxtaxhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdafx.o stdafx.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tandem.o tandem.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmlparameter.o xmlparameter.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmltaxonomy.o xmltaxonomy.cpp
g++ -g -w -O2 -o ../bin/tandem MSNumpress.o base64.o loadmspectrum.o masscalc.o mbiomlreport.o mpam.o mplugin.o mpmods.o mprocess.o mrefine.o mreport.o mscore.o mscore_tandem.o msequencecollection.o msequenceserver.o msequtilities.o mspectrumcondition.o mtermmods.o mxxcleavage.o mzid_report.o p3.o p3mprocess.o p3msequenceserver.o saxbiomlhandler.o saxgamlhandler.o saxhandler.o saxmodhandler.o saxmzdatahandler.o saxmzmlhandler.o saxmzxmlhandler.o saxsaphandler.o saxtandeminputhandler.o saxtaxhandler.o stdafx.o tandem.o xmlparameter.o xmltaxonomy.o -lpthread -L/usr/lib -lm -lexpat
make[1]: Leaving directory '/build/reproducible-path/tandem-mass-201702011/src'
touch build-stamp
dh_testdir
dh_testroot
dh_installchangelogs
dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/doc/tandem-mass
install -p -m0644 debian/.debhelper/generated/tandem-mass/dh_installchangelogs.dch.trimmed debian/tandem-mass/usr/share/doc/tandem-mass/changelog.Debian
dh_installdocs
dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -p -m0644 debian/copyright debian/tandem-mass/usr/share/doc/tandem-mass/copyright
dh_installexamples
dh_installexamples: warning: Compatibility levels before 10 are deprecated (level 9 in use)
dh_install
dh_install: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/bin
cp --reflink=auto -a ./bin/tandem debian/tandem-mass/usr/bin/
dh_installman
dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/man/man1/
install -p -m0644 ./debian/tandem.1 debian/tandem-mass/usr/share/man/man1/tandem.1
man-recode --to-code UTF-8 --suffix .dh-new debian/tandem-mass/usr/share/man/man1/tandem.1
mv debian/tandem-mass/usr/share/man/man1/tandem.1.dh-new debian/tandem-mass/usr/share/man/man1/tandem.1
chmod 0644 -- debian/tandem-mass/usr/share/man/man1/tandem.1
dh_lintian
dh_lintian: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/lintian/overrides
install -p -m0644 debian/tandem-mass.lintian-overrides debian/tandem-mass/usr/share/lintian/overrides/tandem-mass
dh_strip -a
dh_strip: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48
objcopy --only-keep-debug --compress-debug-sections debian/tandem-mass/usr/bin/tandem debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/2bcea181008c28b3b96d6fa3b3eaddae347a8b.debug
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/2bcea181008c28b3b96d6fa3b3eaddae347a8b.debug
strip --remove-section=.comment --remove-section=.note debian/tandem-mass/usr/bin/tandem
objcopy --add-gnu-debuglink debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/2bcea181008c28b3b96d6fa3b3eaddae347a8b.debug debian/tandem-mass/usr/bin/tandem
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc
ln -s tandem-mass debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc/tandem-mass-dbgsym
install -m0755 -d debian/.debhelper/tandem-mass
dh_compress
dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use)
cd debian/tandem-mass
chmod a-x usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1
gzip -9nf usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1
cd '/build/reproducible-path/tandem-mass-201702011'
dh_fixperms
find debian/tandem-mass ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/tandem-mass/usr/share/doc -type f -a -true -a ! -regex 'debian/tandem-mass/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/tandem-mass/usr/share/man debian/tandem-mass/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_installdeb
dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
dh_shlibdeps
dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
dpkg-shlibdeps -Tdebian/tandem-mass.substvars debian/tandem-mass/usr/bin/tandem
dh_gencontrol
dh_gencontrol: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
echo misc:Depends= >> debian/tandem-mass.substvars
echo misc:Pre-Depends= >> debian/tandem-mass.substvars
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN
dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/.debhelper/tandem-mass/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tandem-mass-dbgsym "-DDepends=tandem-mass (= \${binary:Version})" "-DDescription=debug symbols for tandem-mass" -DBuild-Ids=482bcea181008c28b3b96d6fa3b3eaddae347a8b -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/tandem-mass
chmod 0644 -- debian/tandem-mass/DEBIAN/control
dh_md5sums
install -m0755 -d debian/tandem-mass/DEBIAN
cd debian/tandem-mass >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/tandem-mass/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN
cd debian/.debhelper/tandem-mass/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/tandem-mass ..
dpkg-deb --root-owner-group --build debian/.debhelper/tandem-mass/dbgsym-root ..
dpkg-deb: building package 'tandem-mass-dbgsym' in '../tandem-mass-dbgsym_201702011-1_arm64.deb'.
dpkg-deb: building package 'tandem-mass' in '../tandem-mass_201702011-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../tandem-mass_201702011-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../tandem-mass_201702011-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/3010494/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3010494 and its subdirectories
I: Current time: Fri Jan 31 07:38:27 +14 2025
I: pbuilder-time-stamp: 1738258707