I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 21 19:33:04 -12 2025
I: pbuilder-time-stamp: 1740209584
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [vcfanno_0.3.5+ds-2.dsc]
I: copying [./vcfanno_0.3.5+ds.orig.tar.xz]
I: copying [./vcfanno_0.3.5+ds-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./vcfanno_0.3.5+ds-2.dsc: unsupported subcommand
dpkg-source: info: extracting vcfanno in vcfanno-0.3.5+ds
dpkg-source: info: unpacking vcfanno_0.3.5+ds.orig.tar.xz
dpkg-source: info: unpacking vcfanno_0.3.5+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-archive-xopen.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/475244/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  INVOCATION_ID='cf72951ffb234c2799a814b5c09ce406'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='475244'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iEbHqJ5A/pbuilderrc_5cLy --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iEbHqJ5A/b1 --logfile b1/build.log vcfanno_0.3.5+ds-2.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/475244/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-gopkg-check.v1-dev, golang-github-burntsushi-toml-dev, golang-github-brentp-irelate-dev, golang-github-brentp-vcfgo-dev, golang-github-brentp-bix-dev, golang-github-shenwei356-xopen-dev, golang-github-pkg-errors-dev, golang-github-brentp-goluaez-dev, samtools, tabix
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19889 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-golang; however:
  Package dh-golang is not installed.
 pbuilder-satisfydepends-dummy depends on golang-any; however:
  Package golang-any is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however:
  Package golang-github-biogo-hts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however:
  Package golang-gopkg-check.v1-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-burntsushi-toml-dev; however:
  Package golang-github-burntsushi-toml-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-irelate-dev; however:
  Package golang-github-brentp-irelate-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-vcfgo-dev; however:
  Package golang-github-brentp-vcfgo-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-bix-dev; however:
  Package golang-github-brentp-bix-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-xopen-dev; however:
  Package golang-github-shenwei356-xopen-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-pkg-errors-dev; however:
  Package golang-github-pkg-errors-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-goluaez-dev; however:
  Package golang-github-brentp-goluaez-dev is not installed.
 pbuilder-satisfydepends-dummy depends on samtools; however:
  Package samtools is not installed.
 pbuilder-satisfydepends-dummy depends on tabix; however:
  Package tabix is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} binutils-gold{a} binutils-gold-aarch64-linux-gnu{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.24-go{a} golang-1.24-src{a} golang-any{a} golang-github-biogo-hts-dev{a} golang-github-brentp-bix-dev{a} golang-github-brentp-goluaez-dev{a} golang-github-brentp-irelate-dev{a} golang-github-brentp-vcfgo-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-creack-pty-dev{a} golang-github-dsnet-compress-dev{a} golang-github-dsnet-golib-dev{a} golang-github-google-go-cmp-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-pkg-errors-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-gluare-dev{a} golang-github-yuin-goldmark-dev{a} golang-github-yuin-gopher-lua-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkgconf publicsuffix wget 
0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
Need to get 123 MB of archives. After unpacking 507 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 binutils-gold-aarch64-linux-gnu arm64 2.44-1 [1704 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 binutils-gold arm64 2.44-1 [202 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 dh-golang all 1.63 [24.4 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 golang-1.24-src all 1.24.0-1 [20.3 MB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 golang-1.24-go arm64 1.24.0-1 [24.6 MB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 golang-src all 2:1.24~2 [5136 B]
Get: 37 http://deb.debian.org/debian unstable/main arm64 golang-go arm64 2:1.24~2 [44.3 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 golang-any arm64 2:1.24~2 [5216 B]
Get: 39 http://deb.debian.org/debian unstable/main arm64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 golang-github-biogo-hts-dev all 1.4.5+dfsg1-2 [319 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 golang-github-pkg-errors-dev all 0.9.1-3 [12.9 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-mod-dev all 0.19.0-1 [104 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-sys-dev all 0.22.0-1 [431 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-term-dev all 0.22.0-1 [14.8 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-text-dev all 0.22.0-1 [3995 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-net-dev all 1:0.27.0-1 [898 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 golang-golang-x-tools-dev all 1:0.23.0+ds-1 [1593 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 golang-github-brentp-bix-dev all 0.0~git20190718.00aa7a7+ds-2 [7608 B]
Get: 57 http://deb.debian.org/debian unstable/main arm64 golang-github-yuin-gopher-lua-dev all 0.0~git20170915.0.eb1c729-5 [115 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 golang-github-yuin-gluare-dev all 0.0~git20170607.d7c94f1-2 [5204 B]
Get: 59 http://deb.debian.org/debian unstable/main arm64 golang-github-brentp-goluaez-dev all 0.0~git20160116.dd35d08-2 [5068 B]
Get: 60 http://deb.debian.org/debian unstable/main arm64 golang-github-brentp-irelate-dev all 0.0.1+ds-1 [4136 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 golang-github-brentp-vcfgo-dev all 0.0~git20190824.654ed2e-2 [40.7 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 golang-github-burntsushi-toml-dev all 1.4.0-1 [116 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 golang-github-google-go-cmp-dev all 0.6.0-1 [86.6 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 golang-github-dsnet-golib-dev all 0.0~git20171103.1ea1667-1.1 [34.1 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 golang-github-cespare-xxhash-dev all 2.3.0-1 [10.8 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 golang-github-klauspost-compress-dev all 1.17.11+ds1-1 [33.3 MB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 golang-github-dsnet-compress-dev all 0.0.2~git20230904.39efe44+dfsg1-2 [189 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 golang-github-klauspost-pgzip-dev all 1.2.6-1 [115 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 golang-github-shenwei356-xopen-dev all 0.0~git20231203.5ad79ea-1 [6204 B]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.21-1 [637 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.21+ds-1 [461 kB]
Fetched 123 MB in 1s (158 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
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Setting up libnghttp2-14:arm64 (1.64.0-1) ...
Setting up libdeflate0:arm64 (1.23-1+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up golang-github-dsnet-golib-dev (0.0~git20171103.1ea1667-1.1) ...
Setting up binutils-gold-aarch64-linux-gnu (2.44-1) ...
Setting up golang-golang-x-term-dev (0.22.0-1) ...
Setting up libcom-err2:arm64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libkrb5support0:arm64 (1.21.3-4) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up golang-github-kr-text-dev (0.2.0-2) ...
Setting up golang-github-yuin-goldmark-dev (1.7.4-1) ...
Setting up libncurses6:arm64 (6.5+20250216-1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up golang-golang-x-sync-dev (0.7.0-1) ...
Setting up golang-golang-x-mod-dev (0.19.0-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libk5crypto3:arm64 (1.21.3-4) ...
Setting up golang-github-klauspost-compress-dev (1.17.11+ds1-1) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:arm64 (1.6.0-2) ...
Setting up liblzma-dev:arm64 (5.6.3-1+b1) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:arm64 (3.4.7-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up golang-golang-x-text-dev (0.22.0-1) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up golang-github-klauspost-pgzip-dev (1.2.6-1) ...
Setting up libtasn1-6:arm64 (4.20.0-2) ...
Setting up libngtcp2-16:arm64 (1.9.1-1) ...
Setting up golang-golang-x-crypto-dev (1:0.25.0-1) ...
Setting up libkrb5-3:arm64 (1.21.3-4) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up golang-src (2:1.24~2) ...
Setting up tabix (1.21+ds-1) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libldap2:arm64 (2.6.9+dfsg-1) ...
Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ...
Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ...
Setting up libbz2-dev:arm64 (1.0.8-6) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up binutils-gold (2.44-1) ...
Setting up libidn2-0:arm64 (2.3.7-2+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up golang-github-dsnet-compress-dev (0.0.2~git20230904.39efe44+dfsg1-2) ...
Setting up libp11-kit0:arm64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ...
Setting up golang-github-biogo-hts-dev (1.4.5+dfsg1-2) ...
Setting up golang-1.24-go (1.24.0-1) ...
Setting up golang-golang-x-net-dev (1:0.27.0-1) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up libgnutls30t64:arm64 (3.8.9-2) ...
Setting up golang-github-yuin-gopher-lua-dev (0.0~git20170915.0.eb1c729-5) ...
Setting up golang-go:arm64 (2:1.24~2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up golang-github-shenwei356-xopen-dev (0.0~git20231203.5ad79ea-1) ...
Setting up golang-golang-x-tools-dev (1:0.23.0+ds-1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up golang-any:arm64 (2:1.24~2) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up golang-github-yuin-gluare-dev (0.0~git20170607.d7c94f1-2) ...
Setting up golang-github-rogpeppe-go-internal-dev (1.12.0-3) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Setting up golang-github-kr-pretty-dev (0.3.1-1) ...
Setting up libcurl3t64-gnutls:arm64 (8.12.1-2) ...
Setting up debhelper (13.24.1) ...
Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ...
Setting up libhts3t64:arm64 (1.21+ds-1) ...
Setting up golang-github-brentp-bix-dev (0.0~git20190718.00aa7a7+ds-2) ...
Setting up dh-golang (1.63) ...
Setting up golang-github-brentp-goluaez-dev (0.0~git20160116.dd35d08-2) ...
Setting up golang-github-brentp-vcfgo-dev (0.0~git20190824.654ed2e-2) ...
Setting up golang-github-brentp-irelate-dev (0.0.1+ds-1) ...
Setting up samtools (1.21-1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../vcfanno_0.3.5+ds-2_source.changes
dpkg-buildpackage: info: source package vcfanno
dpkg-buildpackage: info: source version 0.3.5+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Lance Lin <lq27267@gmail.com>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --buildsystem=golang --with=golang
   debian/rules execute_before_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
find . -type f -name *.tbi | xargs rm -rf
find . -type f -name ex.bam* | xargs rm -rf
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_auto_clean -O--buildsystem=golang
   dh_autoreconf_clean -O--buildsystem=golang
   dh_clean -O--buildsystem=golang
 debian/rules binary
dh binary --buildsystem=golang --with=golang
   dh_update_autotools_config -O--buildsystem=golang
   dh_autoreconf -O--buildsystem=golang
   dh_auto_configure -O--buildsystem=golang
   dh_auto_build -O--buildsystem=golang
	cd obj-aarch64-linux-gnu && go install -trimpath -v -p 12 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared
encoding
internal/msan
internal/goexperiment
internal/godebugs
internal/profilerecord
internal/byteorder
internal/unsafeheader
internal/goos
internal/coverage/rtcov
internal/asan
internal/goarch
cmp
internal/cpu
internal/itoa
math/bits
unicode/utf8
sync/atomic
unicode
unicode/utf16
log/internal
github.com/dsnet/compress/bzip2/internal/sais
internal/runtime/syscall
github.com/dsnet/compress/internal
internal/abi
internal/chacha8rand
internal/runtime/math
crypto/internal/fips140/alias
crypto/internal/fips140deps/byteorder
crypto/internal/boring/sig
github.com/ulikunitz/xz/internal/hash
math
crypto/internal/fips140/subtle
container/list
vendor/golang.org/x/crypto/cryptobyte/asn1
vendor/golang.org/x/crypto/internal/alias
internal/bytealg
internal/runtime/atomic
internal/runtime/sys
crypto/internal/fips140deps/cpu
internal/nettrace
internal/stringslite
internal/runtime/exithook
github.com/klauspost/compress
internal/race
internal/sync
internal/runtime/maps
runtime
internal/reflectlite
iter
weak
sync
crypto/subtle
slices
maps
errors
sort
internal/bisect
internal/singleflight
unique
internal/testlog
runtime/cgo
strconv
io
vendor/golang.org/x/net/dns/dnsmessage
path
internal/oserror
math/rand/v2
internal/godebug
syscall
container/heap
reflect
strings
bytes
hash
math/rand
crypto/internal/randutil
crypto/internal/fips140deps/godebug
hash/crc32
crypto
hash/crc64
net/netip
vendor/golang.org/x/text/transform
bufio
github.com/brentp/irelate/interfaces
regexp/syntax
github.com/dsnet/compress/internal/errors
crypto/internal/fips140
crypto/internal/impl
net/http/internal/ascii
crypto/internal/fips140/sha256
crypto/internal/fips140/sha512
crypto/internal/fips140/sha3
crypto/tls/internal/fips140tls
github.com/dsnet/compress
crypto/sha3
crypto/internal/fips140hash
crypto/internal/fips140/hmac
internal/syscall/unix
time
internal/syscall/execenv
crypto/internal/fips140/check
crypto/internal/fips140/aes
crypto/internal/fips140/edwards25519/field
crypto/internal/fips140/nistec/fiat
crypto/internal/fips140/bigmod
crypto/internal/fips140/tls12
crypto/internal/fips140/hkdf
regexp
crypto/internal/fips140/tls13
crypto/internal/fips140/edwards25519
io/fs
internal/poll
github.com/BurntSushi/toml/internal
context
crypto/internal/fips140/nistec
internal/filepathlite
internal/fmtsort
encoding/binary
os
encoding/base64
github.com/klauspost/compress/internal/snapref
vendor/golang.org/x/crypto/internal/poly1305
github.com/cespare/xxhash
encoding/pem
fmt
io/ioutil
crypto/internal/sysrand
path/filepath
net
crypto/internal/entropy
crypto/internal/fips140/drbg
os/exec
crypto/internal/fips140only
crypto/internal/fips140/aes/gcm
crypto/internal/fips140/ecdsa
crypto/internal/fips140/ecdh
crypto/internal/fips140/mlkem
crypto/internal/fips140/rsa
crypto/internal/fips140/ed25519
crypto/md5
crypto/rc4
encoding/json
compress/flate
encoding/hex
net/url
flag
encoding/csv
log
github.com/pkg/errors
github.com/yuin/gopher-lua/ast
github.com/yuin/gopher-lua/pm
github.com/dsnet/compress/internal/prefix
crypto/cipher
math/big
github.com/klauspost/compress/fse
runtime/debug
github.com/brentp/vcfgo
github.com/ulikunitz/xz/internal/xlog
github.com/yuin/gopher-lua/parse
compress/gzip
github.com/klauspost/compress/flate
crypto/internal/boring
github.com/dsnet/compress/bzip2
github.com/ulikunitz/xz/lzma
crypto/sha256
github.com/biogo/hts/bgzf
github.com/klauspost/compress/huff0
crypto/aes
crypto/des
crypto/ecdh
crypto/sha512
crypto/hmac
vendor/golang.org/x/crypto/chacha20
github.com/biogo/hts/bgzf/index
crypto/sha1
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/unicode/norm
github.com/yuin/gopher-lua
github.com/biogo/hts/csi
github.com/biogo/hts/internal
vendor/golang.org/x/crypto/chacha20poly1305
github.com/ulikunitz/xz
vendor/golang.org/x/net/http2/hpack
mime
mime/quotedprintable
github.com/biogo/hts/tabix
github.com/BurntSushi/toml
github.com/biogo/hts/sam
vendor/golang.org/x/text/secure/bidirule
net/http/internal
os/user
crypto/rand
crypto/elliptic
github.com/klauspost/pgzip
crypto/internal/boring/bbig
encoding/asn1
github.com/klauspost/compress/zstd
crypto/ed25519
crypto/internal/hpke
crypto/rsa
crypto/dsa
vendor/golang.org/x/net/idna
github.com/biogo/hts/bam
github.com/brentp/irelate/parsers
crypto/x509/pkix
vendor/golang.org/x/crypto/cryptobyte
github.com/brentp/bix
crypto/ecdsa
github.com/brentp/irelate
github.com/yuin/gluare
github.com/brentp/goluaez
github.com/brentp/vcfanno/api
vendor/golang.org/x/net/http/httpproxy
net/textproto
crypto/x509
vendor/golang.org/x/net/http/httpguts
mime/multipart
crypto/tls
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/brentp/vcfanno/shared
github.com/brentp/vcfanno
   dh_auto_test -O--buildsystem=golang
	cd obj-aarch64-linux-gnu && go test -vet=off -v -p 12 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared
testing: warning: no tests to run
PASS
ok  	github.com/brentp/vcfanno	0.015s [no tests to run]
=== RUN   Test
OK: 13 passed
--- PASS: Test (0.02s)
=== RUN   TestHandleA
--- PASS: TestHandleA (0.00s)
=== RUN   TestHandlAMulti
--- PASS: TestHandlAMulti (0.00s)
=== RUN   TestByAlt
--- PASS: TestByAlt (0.00s)
PASS
ok  	github.com/brentp/vcfanno/api	0.026s
?   	github.com/brentp/vcfanno/shared	[no test files]
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=golang
   dh_prep -O--buildsystem=golang
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
dh_auto_install -- --no-source
	cd obj-aarch64-linux-gnu && mkdir -p /build/reproducible-path/vcfanno-0.3.5\+ds/debian/tmp/usr
	cd obj-aarch64-linux-gnu && cp -r bin /build/reproducible-path/vcfanno-0.3.5\+ds/debian/tmp/usr
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_install -O--buildsystem=golang
   debian/rules override_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
# Regenerate bam and bam index file
cat debian/missing-sources/ex.sam| samtools view -Sb - > example/ex.bam
samtools index example/ex.bam example/ex.bam.bai
# Remove corrupt gz file
rm -rf tests/notbgz/notbgz.vcf.gz
# Regenerate all .tbi files
tabix example/exac.vcf.gz
tabix example/fitcons.bed.gz
tabix tests/astar/astar.anno.vcf.gz
tabix tests/by_alt_float/annotation.tsv.gz
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "2	41647	A	G	0.591814	8.493"
tabix tests/citest/at/testexon.bed.gz
tabix tests/citest/dummyexons.bed.gz
tabix tests/data/multiple-alts.vcf.gz
tabix tests/data/number.vcf.gz
tabix tests/dbnsfp/dbNSFP_example.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	A	A	V	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.01	0.56404	D	Q96SF2	TCPQM_HUMAN	380	0.789	0.42612	P	0.542	0.47084	P	0.904520	0.08589	U	0.938783	0.885143	0.27956	N	simple_aae	A380V	TCPQL_HUMAN	A380V	2.93	0.84781	M	2.34	0.16357	T	-3.1	0.63513	D	NM_014406.4	A380V	0.141	0.16484	-1.0168	0.24741	T	0.0721	0.29265	T	10	5.216332	0.70443	25.6	0.99874441920417656	0.95120	0.57787	0.30213	DAEFGBI	0.140898394235071	3.051114	0.48442	0.0299346018802206	0.41293	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	C	A	G	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.033	0.44307	D	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	U	0.938783	0.903476	0.27629	N	simple_aae	A380G	TCPQL_HUMAN	A380G	2.93	0.84781	M	2.51	0.14293	T	-2.32	0.51437	N	NM_014406.4	A380G	0.103	0.10746	-0.8882	0.49115	T	0.0370	0.15942	T	10	3.370940	0.46354	22.9	0.99354601284678379	0.60415	0.63209	0.31754	DAEFGBI	-0.422298261850935	1.3349	0.24762	-0.399121413419092	0.24558	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	T	A	D	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.004	0.65363	D	Q96SF2	TCPQM_HUMAN	380	0.992	0.62897	D	0.889	0.61317	P	0.904520	0.08589	U	0.938783	0.641363	0.30591	N	simple_aae	A380D	TCPQL_HUMAN	A380D	2.93	0.84781	M	2.38	0.15849	T	-3.02	0.62590	D	NM_014406.4	A380D	0.399	0.45798	-0.9564	0.39865	T	0.0994	0.37051	T	10	5.077183	0.68398	25.3	0.99680235566444375	0.79002	0.61538	0.31252	DAEFGBI	0.302961726972868	3.794568	0.56349	0.143990621275748	0.47151	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	A	A	S	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	1.0	0.00963	T	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	N	0.938783	0.988396	0.24389	N	simple_aae	A380S	TCPQL_HUMAN	A380S	0.93	0.23636	L	2.52	0.14169	T	-0.05	0.07751	N	NM_014406.4	A380S	0.072	0.06067	-0.9413	0.42435	T	0.0190	0.07938	T	10	0.328585	0.12563	5.967	0.75658077739943641	0.10790	0.01742	0.05435	NAEFGBI	-0.952241553466705	0.4572448	0.09664	-0.959672568167129	0.10513	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	G	A	P	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.168	0.22973	T	Q96SF2	TCPQM_HUMAN	380	0.231	0.28914	B	0.179	0.34149	B	0.904520	0.08589	N	0.938783	0.910584	0.27489	N	simple_aae	A380P	TCPQL_HUMAN	A380P	1.83	0.48223	L	2.43	0.15268	T	-2.6	0.55938	D	NM_014406.4	A380P	0.246	0.30065	-0.9532	0.40439	T	0.0355	0.15290	T	10	1.588787	0.25254	13.79	0.97019856529327109	0.31467	0.02096	0.06147	NAEFGBI	-0.653690275480882	0.8922109	0.17411	-0.724371843784986	0.16073	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	T	A	T	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.011	0.55478	D	Q96SF2	TCPQM_HUMAN	380	0.62	0.38009	P	0.42	0.43281	B	0.904520	0.08589	U	0.938783	0.974599	0.25456	N	simple_aae	A380T	TCPQL_HUMAN	A380T	2.93	0.84781	M	2.38	0.15849	T	-1.63	0.39092	N	NM_014406.4	A380T	0.116	0.12740	-0.9890	0.32851	T	0.0565	0.23792	T	10	4.977856	0.66957	25.1	0.99619336564501015	0.75088	0.02107	0.06169	NAEFGBI	-0.366914589131182	1.4564	0.26729	-0.531429606692027	0.20917	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	A	G	V	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.997	0.85043	D	0.001429	0.39031	U	0.000000	0.999999	0.58814	D	simple_aae	G379V	TCPQL_HUMAN	G379V	3.235	0.89818	M	0.17	0.60507	T	-8.34	0.97032	D	NM_014406.4	G379V	0.823	0.81093	-0.3590	0.73312	T	0.3588	0.72112	T	10	5.317930	0.71958	25.8	0.99597950363474697	0.73827	0.12361	0.17034	NAEFGBI	0.180546234526767	3.218253	0.50322	-0.032189250061603	0.38380	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	G	G	A	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.027	0.46462	D	Q96SF2	TCPQM_HUMAN	379	0.967	0.54448	D	0.893	0.61563	P	0.001429	0.39031	U	0.000000	0.96704	0.38563	D	simple_aae	G379A	TCPQL_HUMAN	G379A	2.085	0.57921	M	0.23	0.59737	T	-5.51	0.85890	D	NM_014406.4	G379A	0.638	0.65489	-0.5215	0.67883	T	0.2845	0.65659	T	10	1.587093	0.25234	13.78	0.95704074870341493	0.27016	0.10995	0.16155	N	AEFGBI	0.0767559827490708	2.795521	0.45442	-0.102097947215648	0.35323	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	T	G	E	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.998	0.87503	D	0.001429	0.39031	U	0.000000	0.987014	0.40521	D	simple_aae	G379E	TCPQL_HUMAN	G379E	3.235	0.89818	M	0.19	0.60258	T	-7.3	0.94470	D	NM_014406.4	G379E	0.87	0.85752	-0.3469	0.73662	T	0.3588	0.72112	T	10	4.934483	0.66331	25.0	0.99672190146911999	0.78475	0.09552	0.15110	NAEFGBI	0.180844068315063	3.219533	0.50337	-0.0319789254027045	0.38387	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	A	G	X	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	.	.	.	.	.	.	.	.	.	.	.	.	0.001429	0.39031	U	0.000000	1	0.81033	D	complex_aae	G379*	TCPQL_HUMAN	G379*	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	10.820180	0.97019	36	0.99023181097119439	0.50228	0.42257	0.26601	N	AEFGBI	0.602300241062557	5.946894	0.73340	0.306416110176004	0.56174	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	G	G	R	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.462289	0.74129	26.1	0.99854462032636349	0.93313	0.43619	0.26900	NAEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	T	G	R	rs764133439	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.691531	0.77646	26.8	0.9985436076811024	0.93313	0.36787	0.25383	N	AEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	2	1.647e-05	2	1.647e-05	0	0	2	1.727e-04	0	0	0	0	0	0	0	0	21.883e-05	2	1.883e-05	0	0	2	1.783e-04	0	0	0	0	0	0	0	0	2	2.204e-05	2	2.204e-05	0	0	2	1.729e-04	0	0	0	0	0	0	0	0	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
tabix tests/dbnsfp/dbNSFP_ex.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	A	A	V	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.01	0.56404	D	Q96SF2	TCPQM_HUMAN	380	0.789	0.42612	P	0.542	0.47084	P	0.904520	0.08589	U	0.938783	0.885143	0.27956	N	simple_aae	A380V	TCPQL_HUMAN	A380V	2.93	0.84781	M	2.34	0.16357	T	-3.1	0.63513	D	NM_014406.4	A380V	0.141	0.16484	-1.0168	0.24741	T	0.0721	0.29265	T	10	5.216332	0.70443	25.6	0.99874441920417656	0.95120	0.57787	0.30213	DAEFGBI	0.140898394235071	3.051114	0.48442	0.0299346018802206	0.41293	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	C	A	G	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.033	0.44307	D	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	U	0.938783	0.903476	0.27629	N	simple_aae	A380G	TCPQL_HUMAN	A380G	2.93	0.84781	M	2.51	0.14293	T	-2.32	0.51437	N	NM_014406.4	A380G	0.103	0.10746	-0.8882	0.49115	T	0.0370	0.15942	T	10	3.370940	0.46354	22.9	0.99354601284678379	0.60415	0.63209	0.31754	DAEFGBI	-0.422298261850935	1.3349	0.24762	-0.399121413419092	0.24558	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	T	A	D	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.004	0.65363	D	Q96SF2	TCPQM_HUMAN	380	0.992	0.62897	D	0.889	0.61317	P	0.904520	0.08589	U	0.938783	0.641363	0.30591	N	simple_aae	A380D	TCPQL_HUMAN	A380D	2.93	0.84781	M	2.38	0.15849	T	-3.02	0.62590	D	NM_014406.4	A380D	0.399	0.45798	-0.9564	0.39865	T	0.0994	0.37051	T	10	5.077183	0.68398	25.3	0.99680235566444375	0.79002	0.61538	0.31252	DAEFGBI	0.302961726972868	3.794568	0.56349	0.143990621275748	0.47151	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	A	A	S	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	1.0	0.00963	T	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	N	0.938783	0.988396	0.24389	N	simple_aae	A380S	TCPQL_HUMAN	A380S	0.93	0.23636	L	2.52	0.14169	T	-0.05	0.07751	N	NM_014406.4	A380S	0.072	0.06067	-0.9413	0.42435	T	0.0190	0.07938	T	10	0.328585	0.12563	5.967	0.75658077739943641	0.10790	0.01742	0.05435	NAEFGBI	-0.952241553466705	0.4572448	0.09664	-0.959672568167129	0.10513	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	G	A	P	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.168	0.22973	T	Q96SF2	TCPQM_HUMAN	380	0.231	0.28914	B	0.179	0.34149	B	0.904520	0.08589	N	0.938783	0.910584	0.27489	N	simple_aae	A380P	TCPQL_HUMAN	A380P	1.83	0.48223	L	2.43	0.15268	T	-2.6	0.55938	D	NM_014406.4	A380P	0.246	0.30065	-0.9532	0.40439	T	0.0355	0.15290	T	10	1.588787	0.25254	13.79	0.97019856529327109	0.31467	0.02096	0.06147	NAEFGBI	-0.653690275480882	0.8922109	0.17411	-0.724371843784986	0.16073	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	T	A	T	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.011	0.55478	D	Q96SF2	TCPQM_HUMAN	380	0.62	0.38009	P	0.42	0.43281	B	0.904520	0.08589	U	0.938783	0.974599	0.25456	N	simple_aae	A380T	TCPQL_HUMAN	A380T	2.93	0.84781	M	2.38	0.15849	T	-1.63	0.39092	N	NM_014406.4	A380T	0.116	0.12740	-0.9890	0.32851	T	0.0565	0.23792	T	10	4.977856	0.66957	25.1	0.99619336564501015	0.75088	0.02107	0.06169	NAEFGBI	-0.366914589131182	1.4564	0.26729	-0.531429606692027	0.20917	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	A	G	V	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.997	0.85043	D	0.001429	0.39031	U	0.000000	0.999999	0.58814	D	simple_aae	G379V	TCPQL_HUMAN	G379V	3.235	0.89818	M	0.17	0.60507	T	-8.34	0.97032	D	NM_014406.4	G379V	0.823	0.81093	-0.3590	0.73312	T	0.3588	0.72112	T	10	5.317930	0.71958	25.8	0.99597950363474697	0.73827	0.12361	0.17034	NAEFGBI	0.180546234526767	3.218253	0.50322	-0.032189250061603	0.38380	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	G	G	A	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.027	0.46462	D	Q96SF2	TCPQM_HUMAN	379	0.967	0.54448	D	0.893	0.61563	P	0.001429	0.39031	U	0.000000	0.96704	0.38563	D	simple_aae	G379A	TCPQL_HUMAN	G379A	2.085	0.57921	M	0.23	0.59737	T	-5.51	0.85890	D	NM_014406.4	G379A	0.638	0.65489	-0.5215	0.67883	T	0.2845	0.65659	T	10	1.587093	0.25234	13.78	0.95704074870341493	0.27016	0.10995	0.16155	N	AEFGBI	0.0767559827490708	2.795521	0.45442	-0.102097947215648	0.35323	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	T	G	E	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.998	0.87503	D	0.001429	0.39031	U	0.000000	0.987014	0.40521	D	simple_aae	G379E	TCPQL_HUMAN	G379E	3.235	0.89818	M	0.19	0.60258	T	-7.3	0.94470	D	NM_014406.4	G379E	0.87	0.85752	-0.3469	0.73662	T	0.3588	0.72112	T	10	4.934483	0.66331	25.0	0.99672190146911999	0.78475	0.09552	0.15110	NAEFGBI	0.180844068315063	3.219533	0.50337	-0.0319789254027045	0.38387	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	A	G	X	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	.	.	.	.	.	.	.	.	.	.	.	.	0.001429	0.39031	U	0.000000	1	0.81033	D	complex_aae	G379*	TCPQL_HUMAN	G379*	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	10.820180	0.97019	36	0.99023181097119439	0.50228	0.42257	0.26601	N	AEFGBI	0.602300241062557	5.946894	0.73340	0.306416110176004	0.56174	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	G	G	R	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.462289	0.74129	26.1	0.99854462032636349	0.93313	0.43619	0.26900	NAEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	T	G	R	rs764133439	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.691531	0.77646	26.8	0.9985436076811024	0.93313	0.36787	0.25383	N	AEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	2	1.647e-05	2	1.647e-05	0	0	2	1.727e-04	0	0	0	0	0	0	0	0	21.883e-05	2	1.883e-05	0	0	2	1.783e-04	0	0	0	0	0	0	0	0	2	2.204e-05	2	2.204e-05	0	0	2	1.729e-04	0	0	0	0	0	0	0	0	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
tabix tests/id-test/cosmic.small.vcf.gz
tabix tests/id-test/dbsnp.small.vcf.gz
tabix tests/id-test/small.vcf.gz
tabix tests/multiple-alts/ma-db.vcf.gz
tabix tests/notbgz/gno.vcf.gz
tabix tests/overwrite-multiple-alts/a/whole.vcf.gz
tabix tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz
tabix tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz
tabix tests/ref-alt-test/tmp_annotation.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "1	14397	rs756427959	CTGT	C	530	71	0.1340	194	71	0	460	59	0.1283	171	59	0	304	36	0.1184	116	36	0	94	11	0.1170	36	11	0"
[E::get_intv] Failed to parse TBX_GENERIC: was wrong -p [type] used?
The offending line was: "1	14397	rs756427959	CTGT	CT	530	0	0.0000	265	0	0	460	0	0.0000	230	0	0	304	0	0.0000	152	0	0	94	0	0.0000	47	0	0"
tabix tests/ref-alt-test/tmp_calls.vcf.gz
tabix tests/testVA/test-gnomad.vcf.gz
tabix docs/examples/gff_sv/genes.gff3.gz
dh_installdocs
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_installchangelogs -O--buildsystem=golang
   dh_installman -O--buildsystem=golang
   dh_installsystemduser -O--buildsystem=golang
   dh_perl -O--buildsystem=golang
   dh_link -O--buildsystem=golang
   dh_strip_nondeterminism -O--buildsystem=golang
   dh_compress -O--buildsystem=golang
   dh_fixperms -O--buildsystem=golang
   dh_missing -O--buildsystem=golang
   dh_strip -a -O--buildsystem=golang
   dh_makeshlibs -a -O--buildsystem=golang
   dh_shlibdeps -a -O--buildsystem=golang
   dh_installdeb -O--buildsystem=golang
   dh_golang -O--buildsystem=golang
   dh_gencontrol -O--buildsystem=golang
dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined
dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined
   dh_md5sums -O--buildsystem=golang
   dh_builddeb -O--buildsystem=golang
dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_arm64.deb'.
dpkg-deb: building package 'vcfanno-dbgsym' in '../vcfanno-dbgsym_0.3.5+ds-2_arm64.deb'.
dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-2_arm64.buildinfo
 dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/475244 and its subdirectories
I: Current time: Fri Feb 21 19:34:09 -12 2025
I: pbuilder-time-stamp: 1740209649