I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 14 16:43:05 -12 2025 I: pbuilder-time-stamp: 1739594585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [extra-data_1.19.0-1.dsc] I: copying [./extra-data_1.19.0.orig.tar.gz] I: copying [./extra-data_1.19.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./extra-data_1.19.0-1.dsc: unsupported subcommand dpkg-source: info: extracting extra-data in extra-data-1.19.0 dpkg-source: info: unpacking extra-data_1.19.0.orig.tar.gz dpkg-source: info: unpacking extra-data_1.19.0-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20894/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='0dd30814b46d4a5ba3deea38c1d4cb08' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20894' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8xlam83e/pbuilderrc_mhlF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8xlam83e/b1 --logfile b1/build.log extra-data_1.19.0-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32c 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20894/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-cloudpickle, python3-dask, python3-h5py, python3-karabo-bridge, python3-matplotlib, python3-numpy, python3-packaging, python3-pandas, python3-psutil, python3-pytest, python3-setuptools, python3-testpath, python3-xarray, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19533 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-cloudpickle; however: Package python3-cloudpickle is not installed. pbuilder-satisfydepends-dummy depends on python3-dask; however: Package python3-dask is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-karabo-bridge; however: Package python3-karabo-bridge is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-testpath; however: Package python3-testpath is not installed. pbuilder-satisfydepends-dummy depends on python3-xarray; however: Package python3-xarray is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnorm1t64{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpgm-5.3-0t64{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsodium23{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-build{a} python3-cffi-backend{a} python3-click{a} python3-cloudpickle{a} python3-contourpy{a} python3-cycler{a} python3-dask{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-fsspec{a} python3-h5py{a} python3-h5py-serial{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-karabo-bridge{a} python3-kiwisolver{a} python3-locket{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-msgpack{a} python3-msgpack-numpy{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-partd{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-testpath{a} python3-tk{a} python3-toml{a} python3-toolz{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-wheel{a} python3-xarray{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl git isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-blosc python3-bottleneck python3-bs4 python3-cftime python3-cssselect python3-distributed python3-dropbox python3-h5netcdf python3-html5lib python3-libarchive-c python3-netcdf4 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-paramiko python3-pooch python3-pygit2 python3-pygments python3-rasterio python3-requests python3-tables python3-zarr shared-mime-info wget xdg-user-dirs 0 packages upgraded, 203 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 507 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.2-1 [845 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.2-1 [1842 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 11.0.0 [27.6 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.2-1 [1853 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.9-1 [803 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.9-1 [1810 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.4-3 [84.6 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf automake all 1:1.17-3 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [934 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.46-4 [267 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-2 [317 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-2 [371 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b4 [25.0 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b4 [46.4 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+24 [217 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b3 [16.4 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.16-1 [698 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 53 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-3 [539 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 59 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf debhelper all 13.24.1 [920 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 74 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.6.0-1 [222 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.6.0-1 [720 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20250108 [113 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf fonts-lyx all 2.4.3-1 [190 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libaec0 armhf 1.1.3-1+b1 [21.9 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.1-2 [116 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 87 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.12.1-2 [320 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.23-1+b1 [36.7 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libgpg-error0 armhf 1.51-3 [71.9 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libgcrypt20 armhf 1.11.0-7 [727 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-17 [263 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.83.3-2 [1337 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.2.0-1 [419 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libsz2 armhf 1.1.3-1+b1 [8036 B] Get: 111 http://deb.debian.org/debian unstable/main armhf libhdf5-310 armhf 1.14.5+repack-3 [1272 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [67.3 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.1-2 [1835 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf liblzf1 armhf 3.6-4+b3 [9380 B] Get: 123 http://deb.debian.org/debian unstable/main armhf libnorm1t64 armhf 1.5.9+dfsg-3.1+b2 [187 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.3-1 [184 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libpgm-5.3-0t64 armhf 5.3.128~dfsg-2.1+b1 [156 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.9-1 [1833 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.5.0-0.1 [114 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf libsodium23 armhf 1.0.18-1+b2 [139 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.5.0-0.1 [273 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.5.0-0.1 [112 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.5.0-0.1 [123 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libyaml-0-2 armhf 0.2.5-2 [45.4 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libzmq5 armhf 4.3.5-1+b3 [239 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.45.1-1 [56.7 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf python3-build all 1.2.2-1 [36.0 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.9-1 [681 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.13.1-2 [1056 B] Get: 151 http://deb.debian.org/debian unstable/main armhf python3-attr all 25.1.0-1 [68.7 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf python3-brotli armhf 1.1.0-2+b6 [302 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf python3-cffi-backend armhf 1.17.1-2+b1 [83.7 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf python3-click all 8.1.8-1 [95.2 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf python3-cloudpickle all 3.1.1-1 [26.6 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf python3-numpy-dev armhf 1:2.2.2+ds-2 [132 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:2.2.2+ds-2 [3882 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf python3-contourpy armhf 1.3.1-1 [217 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 160 http://deb.debian.org/debian unstable/main armhf python3-fsspec all 2024.12.0-2 [210 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf python3-toolz all 1.0.0-2 [44.2 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf python3-locket all 1.0.0-2 [5820 B] Get: 163 http://deb.debian.org/debian unstable/main armhf python3-partd all 1.4.2-1 [15.4 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf python3-yaml armhf 6.0.2-1+b1 [158 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf python3-dask all 2024.12.1+dfsg-2 [984 kB] Get: 166 http://deb.debian.org/debian unstable/main armhf python3-dateutil all 2.9.0-3 [79.3 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf python3-pytz all 2025.1-3 [150 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf python3-tz all 2025.1-3 [4004 B] Get: 170 http://deb.debian.org/debian unstable/main armhf python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf python3-fs all 2.4.16-6 [95.1 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf python3-lxml armhf 5.3.1-1 [1474 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf python3-lz4 armhf 4.4.0+dfsg-1 [23.9 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.14.1-4 [18.5 MB] Get: 175 http://deb.debian.org/debian unstable/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf python3-sympy all 1.13.3-2 [4148 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 179 http://deb.debian.org/debian unstable/main armhf python3-fonttools armhf 4.55.3-2 [1529 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf python3-h5py-serial armhf 3.12.1-1+b2 [1280 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf python3-h5py all 3.12.1-1 [15.0 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 183 http://deb.debian.org/debian unstable/main armhf python3-markupsafe armhf 2.1.5-1+b2 [13.4 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf python3-jinja2 all 3.1.5-2 [107 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf python3-msgpack armhf 1.0.3-3+b3 [101 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf python3-msgpack-numpy all 0.4.8-1 [8956 B] Get: 187 http://deb.debian.org/debian unstable/main armhf python3-zmq armhf 26.2.1-1 [197 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf python3-karabo-bridge all 0.6.2-1 [17.2 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf python3-kiwisolver armhf 1.4.7-3 [64.9 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 11.1.0-5 [496 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf python3.12-tk armhf 3.12.9-1 [109 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf python3.13-tk armhf 3.13.2-1 [100 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf python3-tk armhf 3.13.1-1 [9464 B] Get: 194 http://deb.debian.org/debian unstable/main armhf python3-pil.imagetk armhf 11.1.0-5 [81.1 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf python3-matplotlib armhf 3.8.3-3+b2 [5583 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf python3-pandas-lib armhf 2.2.3+dfsg-8 [6480 kB] Get: 198 http://deb.debian.org/debian unstable/main armhf python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf python3-psutil armhf 5.9.8-2 [225 kB] Get: 201 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.4-1 [250 kB] Get: 202 http://deb.debian.org/debian unstable/main armhf python3-testpath all 0.6.0+dfsg-3 [10.3 kB] Get: 203 http://deb.debian.org/debian unstable/main armhf python3-xarray all 2025.01.2-1 [800 kB] Fetched 116 MB in 2s (64.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19533 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_armhf.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:armhf (3.13.2-1) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19867 files and directories currently installed.) 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:armhf. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_armhf.deb ... Unpacking libpython3.13-stdlib:armhf (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_armhf.deb ... Unpacking python3.13 (3.13.2-1) ... 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Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../001-libpython3.12-minimal_3.12.9-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.9-1_armhf.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-3_armhf.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../112-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:armhf. Preparing to unpack .../113-libopenjp2-7_2.5.3-1_armhf.deb ... Unpacking libopenjp2-7:armhf (2.5.3-1) ... Selecting previously unselected package libpgm-5.3-0t64:armhf. Preparing to unpack .../114-libpgm-5.3-0t64_5.3.128~dfsg-2.1+b1_armhf.deb ... Unpacking libpgm-5.3-0t64:armhf (5.3.128~dfsg-2.1+b1) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../115-libpython3.12-stdlib_3.12.9-1_armhf.deb ... 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Setting up libsharpyuv0:armhf (1.5.0-0.1) ... Setting up libxau6:armhf (1:1.0.11-1) ... Setting up libxdmcp6:armhf (1:1.1.5-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libxcb1:armhf (1.17.0-2+b1) ... Setting up libsodium23:armhf (1.0.18-1+b2) ... Setting up libicu72:armhf (72.1-6) ... Setting up liblerc4:armhf (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libgpg-error0:armhf (1.51-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:armhf (0.2.5-2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libpython3.12-minimal:armhf (3.12.9-1) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:armhf (1.11.0-7) ... Setting up libqhull-r8.0:armhf (2020.2-6+b2) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:armhf (2.1-6.1+b2) ... Setting up libaec0:armhf (1.1.3-1+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 15 04:44:21 UTC 2025. Universal Time is now: Sat Feb 15 04:44:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpgm-5.3-0t64:armhf (5.3.128~dfsg-2.1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up liblzf1:armhf (3.6-4+b3) ... Setting up libfribidi0:armhf (1.0.16-1) ... Setting up libimagequant0:armhf (2.18.0-1+b2) ... Setting up libunistring5:armhf (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.46-4) ... Setting up python3-numpy-dev:armhf (1:2.2.2+ds-2) ... Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-4) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:armhf (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up libwebp7:armhf (1.5.0-0.1) ... Setting up libffi8:armhf (3.4.7-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libtasn1-6:armhf (4.20.0-2) ... Setting up libopenjp2-7:armhf (2.5.3-1) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-4) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:armhf (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:armhf (2.6.9+dfsg-1) ... Setting up libsz2:armhf (1.1.3-1+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:armhf (1.5.0-0.1) ... Setting up libxext6:armhf (2:1.3.4-1+b3) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:armhf (2.83.3-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-4) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libxslt1.1:armhf (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:armhf (10.2.0-1) ... Setting up libxss1:armhf (1:1.2.3-1+b3) ... Setting up libfontconfig1:armhf (2.15.0-2) ... Setting up libpython3.13-stdlib:armhf (3.13.2-1) ... Setting up libpython3-stdlib:armhf (3.13.1-2) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:armhf (3.8.9-2) ... Setting up libxft2:armhf (2.3.6-1+b4) ... Setting up libzmq5:armhf (4.3.5-1+b3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:armhf (8.6.16-1) ... Setting up python3.12-tk (3.12.9-1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3.13-tk (3.13.2-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-cloudpickle (3.1.1-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-testpath (0.6.0+dfsg-3) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up libraqm0:armhf (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.2+ds-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:armhf (5.3.1-1) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up python3-toolz (1.0.0-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-locket (1.0.0-2) ... Setting up python3-cffi-backend:armhf (1.17.1-2+b1) ... Setting up python3-partd (1.4.2-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-2) ... Setting up python3-attr (25.1.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:armhf (3.12.9-1) ... Setting up python3-msgpack-numpy (0.4.8-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:armhf (8.12.1-2) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-fsspec (2024.12.0-2) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-tk:armhf (3.13.1-1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-fs (2.4.16-6) ... Setting up python3-pil:armhf (11.1.0-5) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-pil.imagetk:armhf (11.1.0-5) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-zmq (26.2.1-1) ... Setting up libhdf5-310:armhf (1.14.5+repack-3) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... Setting up python3-karabo-bridge (0.6.2-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-xarray (2025.01.2-1) ... Setting up python3-dask (2024.12.1+dfsg-2) ... Setting up python3-h5py-serial (3.12.1-1+b2) ... Setting up python3-h5py (3.12.1-1) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Setting up python3-fonttools (4.55.3-2) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/extra-data-1.19.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../extra-data_1.19.0-1_source.changes dpkg-buildpackage: info: source package extra-data dpkg-buildpackage: info: source version 1.19.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Colin Watson dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.12_extra-data * Building wheel... running bdist_wheel running build running build_py creating build/lib/extra_data copying extra_data/validation.py -> build/lib/extra_data copying extra_data/read_machinery.py -> build/lib/extra_data copying extra_data/reader.py -> build/lib/extra_data copying extra_data/keydata.py -> build/lib/extra_data copying extra_data/exceptions.py -> build/lib/extra_data copying extra_data/run_files_map.py -> build/lib/extra_data copying extra_data/export.py -> build/lib/extra_data copying extra_data/stacking.py -> build/lib/extra_data copying extra_data/locality.py -> build/lib/extra_data copying extra_data/utils.py -> build/lib/extra_data copying extra_data/lsxfel.py -> build/lib/extra_data copying extra_data/writer.py -> build/lib/extra_data copying extra_data/sourcedata.py -> build/lib/extra_data copying extra_data/file_access.py -> build/lib/extra_data copying extra_data/copy.py -> build/lib/extra_data copying extra_data/__init__.py -> build/lib/extra_data copying extra_data/voview.py -> build/lib/extra_data copying extra_data/aliases.py -> build/lib/extra_data copying extra_data/write_cxi.py -> build/lib/extra_data copying extra_data/components.py -> build/lib/extra_data creating build/lib/extra_data/tests copying extra_data/tests/make_examples.py -> build/lib/extra_data/tests copying extra_data/tests/conftest.py -> build/lib/extra_data/tests copying extra_data/tests/test_open_file_limiter.py -> build/lib/extra_data/tests copying extra_data/tests/test_keydata.py -> build/lib/extra_data/tests copying extra_data/tests/test_aliases.py -> build/lib/extra_data/tests copying extra_data/tests/test_read_machinery.py -> build/lib/extra_data/tests copying extra_data/tests/test_voview.py -> build/lib/extra_data/tests copying extra_data/tests/test_validation.py -> build/lib/extra_data/tests copying extra_data/tests/test_sourcedata.py -> build/lib/extra_data/tests copying extra_data/tests/test_writer.py -> build/lib/extra_data/tests copying extra_data/tests/test_streamer.py -> build/lib/extra_data/tests copying extra_data/tests/test_slice_objs.py -> build/lib/extra_data/tests copying extra_data/tests/test_open_run.py -> build/lib/extra_data/tests copying extra_data/tests/test_file_access.py -> build/lib/extra_data/tests copying extra_data/tests/test_bad_trains.py -> build/lib/extra_data/tests copying extra_data/tests/test_components.py -> build/lib/extra_data/tests copying extra_data/tests/test_copy.py -> build/lib/extra_data/tests copying extra_data/tests/test_lsxfel.py -> build/lib/extra_data/tests copying extra_data/tests/__init__.py -> build/lib/extra_data/tests copying extra_data/tests/test_stacking.py -> build/lib/extra_data/tests copying extra_data/tests/test_reader_mockdata.py -> build/lib/extra_data/tests copying extra_data/tests/test_run_files_map.py -> build/lib/extra_data/tests creating build/lib/extra_data/cli copying extra_data/cli/make_virtual_cxi.py -> build/lib/extra_data/cli copying extra_data/cli/__init__.py -> build/lib/extra_data/cli copying extra_data/cli/serve_run.py -> build/lib/extra_data/cli copying extra_data/cli/serve_files.py -> build/lib/extra_data/cli creating build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/motor.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/jungfrau.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/adc.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/xgm.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/base.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/sidemic_camera.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/uvlamp.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/proc.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/gauge.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/agipd.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/mkfile.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/tsens.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/__init__.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/detectors.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/imgfel.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/basler_camera.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/mpod.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/control_common.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/dctrl.py -> build/lib/extra_data/tests/mockdata copying extra_data/tests/mockdata/gec_camera.py -> build/lib/extra_data/tests/mockdata creating build/lib/extra_data/tests/cli copying extra_data/tests/cli/test_make_virtual_cxi.py -> build/lib/extra_data/tests/cli copying extra_data/tests/cli/__init__.py -> build/lib/extra_data/tests/cli installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/extra_data copying build/lib/extra_data/validation.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/read_machinery.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/reader.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/keydata.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/exceptions.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/run_files_map.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/export.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/stacking.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/locality.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/utils.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/lsxfel.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/writer.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/sourcedata.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/file_access.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/copy.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/voview.py -> build/bdist.linux-armv7l/wheel/./extra_data creating build/bdist.linux-armv7l/wheel/extra_data/tests copying build/lib/extra_data/tests/make_examples.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_open_file_limiter.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_keydata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_aliases.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_read_machinery.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_voview.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_validation.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_sourcedata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_writer.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_streamer.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_slice_objs.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_open_run.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_file_access.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_bad_trains.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_components.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests creating build/bdist.linux-armv7l/wheel/extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/motor.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/jungfrau.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/adc.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/xgm.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/base.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/sidemic_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/uvlamp.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/proc.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/gauge.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/agipd.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/mkfile.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/tsens.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/detectors.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/imgfel.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/basler_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/mpod.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/control_common.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/dctrl.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/gec_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/test_copy.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_lsxfel.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_stacking.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests creating build/bdist.linux-armv7l/wheel/extra_data/tests/cli copying build/lib/extra_data/tests/cli/test_make_virtual_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/cli copying build/lib/extra_data/tests/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/cli copying build/lib/extra_data/tests/test_reader_mockdata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_run_files_map.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/aliases.py -> build/bdist.linux-armv7l/wheel/./extra_data creating build/bdist.linux-armv7l/wheel/extra_data/cli copying build/lib/extra_data/cli/make_virtual_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/serve_run.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/serve_files.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/write_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/components.py -> build/bdist.linux-armv7l/wheel/./extra_data running install_egg_info running egg_info creating EXtra_data.egg-info writing EXtra_data.egg-info/PKG-INFO writing dependency_links to EXtra_data.egg-info/dependency_links.txt writing entry points to EXtra_data.egg-info/entry_points.txt writing requirements to EXtra_data.egg-info/requires.txt writing top-level names to EXtra_data.egg-info/top_level.txt writing manifest file 'EXtra_data.egg-info/SOURCES.txt' reading manifest file 'EXtra_data.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'EXtra_data.egg-info/SOURCES.txt' Copying EXtra_data.egg-info to build/bdist.linux-armv7l/wheel/./EXtra_data-1.19.0.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/EXtra_data-1.19.0.dist-info/WHEEL creating '/build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.12_extra-data/.tmp-m1ymzp5n/EXtra_data-1.19.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'extra_data/__init__.py' adding 'extra_data/aliases.py' adding 'extra_data/components.py' adding 'extra_data/copy.py' adding 'extra_data/exceptions.py' adding 'extra_data/export.py' adding 'extra_data/file_access.py' adding 'extra_data/keydata.py' adding 'extra_data/locality.py' adding 'extra_data/lsxfel.py' adding 'extra_data/read_machinery.py' adding 'extra_data/reader.py' adding 'extra_data/run_files_map.py' adding 'extra_data/sourcedata.py' adding 'extra_data/stacking.py' adding 'extra_data/utils.py' adding 'extra_data/validation.py' adding 'extra_data/voview.py' adding 'extra_data/write_cxi.py' adding 'extra_data/writer.py' adding 'extra_data/cli/__init__.py' adding 'extra_data/cli/make_virtual_cxi.py' adding 'extra_data/cli/serve_files.py' adding 'extra_data/cli/serve_run.py' adding 'extra_data/tests/__init__.py' adding 'extra_data/tests/conftest.py' adding 'extra_data/tests/make_examples.py' adding 'extra_data/tests/test_aliases.py' adding 'extra_data/tests/test_bad_trains.py' adding 'extra_data/tests/test_components.py' adding 'extra_data/tests/test_copy.py' adding 'extra_data/tests/test_file_access.py' adding 'extra_data/tests/test_keydata.py' adding 'extra_data/tests/test_lsxfel.py' adding 'extra_data/tests/test_open_file_limiter.py' adding 'extra_data/tests/test_open_run.py' adding 'extra_data/tests/test_read_machinery.py' adding 'extra_data/tests/test_reader_mockdata.py' adding 'extra_data/tests/test_run_files_map.py' adding 'extra_data/tests/test_slice_objs.py' adding 'extra_data/tests/test_sourcedata.py' adding 'extra_data/tests/test_stacking.py' adding 'extra_data/tests/test_streamer.py' adding 'extra_data/tests/test_validation.py' adding 'extra_data/tests/test_voview.py' adding 'extra_data/tests/test_writer.py' adding 'extra_data/tests/cli/__init__.py' adding 'extra_data/tests/cli/test_make_virtual_cxi.py' adding 'extra_data/tests/mockdata/__init__.py' adding 'extra_data/tests/mockdata/adc.py' adding 'extra_data/tests/mockdata/agipd.py' adding 'extra_data/tests/mockdata/base.py' adding 'extra_data/tests/mockdata/basler_camera.py' adding 'extra_data/tests/mockdata/control_common.py' adding 'extra_data/tests/mockdata/dctrl.py' adding 'extra_data/tests/mockdata/detectors.py' adding 'extra_data/tests/mockdata/gauge.py' adding 'extra_data/tests/mockdata/gec_camera.py' adding 'extra_data/tests/mockdata/imgfel.py' adding 'extra_data/tests/mockdata/jungfrau.py' adding 'extra_data/tests/mockdata/mkfile.py' adding 'extra_data/tests/mockdata/motor.py' adding 'extra_data/tests/mockdata/mpod.py' adding 'extra_data/tests/mockdata/proc.py' adding 'extra_data/tests/mockdata/sidemic_camera.py' adding 'extra_data/tests/mockdata/tsens.py' adding 'extra_data/tests/mockdata/uvlamp.py' adding 'extra_data/tests/mockdata/xgm.py' adding 'EXtra_data-1.19.0.dist-info/LICENSE' adding 'EXtra_data-1.19.0.dist-info/METADATA' adding 'EXtra_data-1.19.0.dist-info/WHEEL' adding 'EXtra_data-1.19.0.dist-info/entry_points.txt' adding 'EXtra_data-1.19.0.dist-info/top_level.txt' adding 'EXtra_data-1.19.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Successfully built EXtra_data-1.19.0-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.13_extra-data * Building wheel... running bdist_wheel running build running build_py installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/extra_data copying build/lib/extra_data/validation.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/read_machinery.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/reader.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/keydata.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/exceptions.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/run_files_map.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/export.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/stacking.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/locality.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/utils.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/lsxfel.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/writer.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/sourcedata.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/file_access.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/copy.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/voview.py -> build/bdist.linux-armv7l/wheel/./extra_data creating build/bdist.linux-armv7l/wheel/extra_data/tests copying build/lib/extra_data/tests/make_examples.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_open_file_limiter.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_keydata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_aliases.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_read_machinery.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_voview.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_validation.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_sourcedata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_writer.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_streamer.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_slice_objs.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_open_run.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_file_access.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_bad_trains.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_components.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests creating build/bdist.linux-armv7l/wheel/extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/motor.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/jungfrau.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/adc.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/xgm.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/base.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/sidemic_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/uvlamp.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/proc.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/gauge.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/agipd.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/mkfile.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/tsens.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/detectors.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/imgfel.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/basler_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/mpod.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/control_common.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/dctrl.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/mockdata/gec_camera.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/mockdata copying build/lib/extra_data/tests/test_copy.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_lsxfel.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_stacking.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests creating build/bdist.linux-armv7l/wheel/extra_data/tests/cli copying build/lib/extra_data/tests/cli/test_make_virtual_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/cli copying build/lib/extra_data/tests/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests/cli copying build/lib/extra_data/tests/test_reader_mockdata.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/tests/test_run_files_map.py -> build/bdist.linux-armv7l/wheel/./extra_data/tests copying build/lib/extra_data/aliases.py -> build/bdist.linux-armv7l/wheel/./extra_data creating build/bdist.linux-armv7l/wheel/extra_data/cli copying build/lib/extra_data/cli/make_virtual_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/serve_run.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/cli/serve_files.py -> build/bdist.linux-armv7l/wheel/./extra_data/cli copying build/lib/extra_data/write_cxi.py -> build/bdist.linux-armv7l/wheel/./extra_data copying build/lib/extra_data/components.py -> build/bdist.linux-armv7l/wheel/./extra_data running install_egg_info running egg_info writing EXtra_data.egg-info/PKG-INFO writing dependency_links to EXtra_data.egg-info/dependency_links.txt writing entry points to EXtra_data.egg-info/entry_points.txt writing requirements to EXtra_data.egg-info/requires.txt writing top-level names to EXtra_data.egg-info/top_level.txt reading manifest file 'EXtra_data.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'EXtra_data.egg-info/SOURCES.txt' Copying EXtra_data.egg-info to build/bdist.linux-armv7l/wheel/./EXtra_data-1.19.0.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/EXtra_data-1.19.0.dist-info/WHEEL creating '/build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.13_extra-data/.tmp-iibdwg_7/EXtra_data-1.19.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'extra_data/__init__.py' adding 'extra_data/aliases.py' adding 'extra_data/components.py' adding 'extra_data/copy.py' adding 'extra_data/exceptions.py' adding 'extra_data/export.py' adding 'extra_data/file_access.py' adding 'extra_data/keydata.py' adding 'extra_data/locality.py' adding 'extra_data/lsxfel.py' adding 'extra_data/read_machinery.py' adding 'extra_data/reader.py' adding 'extra_data/run_files_map.py' adding 'extra_data/sourcedata.py' adding 'extra_data/stacking.py' adding 'extra_data/utils.py' adding 'extra_data/validation.py' adding 'extra_data/voview.py' adding 'extra_data/write_cxi.py' adding 'extra_data/writer.py' adding 'extra_data/cli/__init__.py' adding 'extra_data/cli/make_virtual_cxi.py' adding 'extra_data/cli/serve_files.py' adding 'extra_data/cli/serve_run.py' adding 'extra_data/tests/__init__.py' adding 'extra_data/tests/conftest.py' adding 'extra_data/tests/make_examples.py' adding 'extra_data/tests/test_aliases.py' adding 'extra_data/tests/test_bad_trains.py' adding 'extra_data/tests/test_components.py' adding 'extra_data/tests/test_copy.py' adding 'extra_data/tests/test_file_access.py' adding 'extra_data/tests/test_keydata.py' adding 'extra_data/tests/test_lsxfel.py' adding 'extra_data/tests/test_open_file_limiter.py' adding 'extra_data/tests/test_open_run.py' adding 'extra_data/tests/test_read_machinery.py' adding 'extra_data/tests/test_reader_mockdata.py' adding 'extra_data/tests/test_run_files_map.py' adding 'extra_data/tests/test_slice_objs.py' adding 'extra_data/tests/test_sourcedata.py' adding 'extra_data/tests/test_stacking.py' adding 'extra_data/tests/test_streamer.py' adding 'extra_data/tests/test_validation.py' adding 'extra_data/tests/test_voview.py' adding 'extra_data/tests/test_writer.py' adding 'extra_data/tests/cli/__init__.py' adding 'extra_data/tests/cli/test_make_virtual_cxi.py' adding 'extra_data/tests/mockdata/__init__.py' adding 'extra_data/tests/mockdata/adc.py' adding 'extra_data/tests/mockdata/agipd.py' adding 'extra_data/tests/mockdata/base.py' adding 'extra_data/tests/mockdata/basler_camera.py' adding 'extra_data/tests/mockdata/control_common.py' adding 'extra_data/tests/mockdata/dctrl.py' adding 'extra_data/tests/mockdata/detectors.py' adding 'extra_data/tests/mockdata/gauge.py' adding 'extra_data/tests/mockdata/gec_camera.py' adding 'extra_data/tests/mockdata/imgfel.py' adding 'extra_data/tests/mockdata/jungfrau.py' adding 'extra_data/tests/mockdata/mkfile.py' adding 'extra_data/tests/mockdata/motor.py' adding 'extra_data/tests/mockdata/mpod.py' adding 'extra_data/tests/mockdata/proc.py' adding 'extra_data/tests/mockdata/sidemic_camera.py' adding 'extra_data/tests/mockdata/tsens.py' adding 'extra_data/tests/mockdata/uvlamp.py' adding 'extra_data/tests/mockdata/xgm.py' adding 'EXtra_data-1.19.0.dist-info/LICENSE' adding 'EXtra_data-1.19.0.dist-info/METADATA' adding 'EXtra_data-1.19.0.dist-info/WHEEL' adding 'EXtra_data-1.19.0.dist-info/entry_points.txt' adding 'EXtra_data-1.19.0.dist-info/top_level.txt' adding 'EXtra_data-1.19.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Successfully built EXtra_data-1.19.0-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.12_extra-data/build; python3.12 -m pytest /build/reproducible-path/extra-data-1.19.0/extra_data/tests ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/extra-data-1.19.0 configfile: pytest.ini plugins: typeguard-4.4.1 collected 590 items ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 0%] ../../../extra_data/tests/test_aliases.py .......... [ 2%] ../../../extra_data/tests/test_bad_trains.py . [ 2%] ../../../extra_data/tests/test_components.py F.F........................ [ 6%] [ 6%] ../../../extra_data/tests/test_copy.py .. [ 7%] ../../../extra_data/tests/test_file_access.py ......... [ 8%] ../../../extra_data/tests/test_keydata.py ................ [ 11%] ../../../extra_data/tests/test_lsxfel.py .. [ 11%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 12%] ../../../extra_data/tests/test_read_machinery.py . [ 12%] ../../../extra_data/tests/test_reader_mockdata.py ...................... [ 15%] ........................................... [ 23%] ../../../extra_data/tests/test_run_files_map.py . [ 23%] ../../../extra_data/tests/test_sourcedata.py ............... [ 25%] ../../../extra_data/tests/test_stacking.py ........ [ 27%] ../../../extra_data/tests/test_streamer.py .. [ 27%] ../../../extra_data/tests/test_validation.py .. [ 27%] ../../../extra_data/tests/test_voview.py ... [ 28%] ../../../extra_data/tests/test_writer.py .. [ 28%] ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 29%] ../../../extra_data/tests/test_aliases.py .......... [ 30%] ../../../extra_data/tests/test_bad_trains.py . [ 31%] ../../../extra_data/tests/test_components.py F.......................... [ 35%] [ 35%] ../../../extra_data/tests/test_copy.py .. [ 35%] ../../../extra_data/tests/test_file_access.py ......... [ 37%] ../../../extra_data/tests/test_keydata.py ................ [ 40%] ../../../extra_data/tests/test_lsxfel.py .. [ 40%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 40%] ../../../extra_data/tests/test_read_machinery.py . [ 41%] ../../../extra_data/tests/test_reader_mockdata.py ...................... [ 44%] ........................................... [ 52%] ../../../extra_data/tests/test_run_files_map.py . [ 52%] ../../../extra_data/tests/test_sourcedata.py ............... [ 54%] ../../../extra_data/tests/test_stacking.py ........ [ 56%] ../../../extra_data/tests/test_streamer.py .. [ 56%] ../../../extra_data/tests/test_validation.py .. [ 56%] ../../../extra_data/tests/test_voview.py ... [ 57%] ../../../extra_data/tests/test_writer.py .. [ 57%] ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 57%] ../../../extra_data/tests/test_aliases.py .......... [ 59%] ../../../extra_data/tests/test_bad_trains.py . [ 59%] ../../../extra_data/tests/test_components.py F.......................... [ 64%] [ 64%] ../../../extra_data/tests/test_copy.py .. [ 64%] ../../../extra_data/tests/test_file_access.py ......... [ 66%] ../../../extra_data/tests/test_keydata.py ................ [ 68%] ../../../extra_data/tests/test_lsxfel.py .. [ 69%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 69%] ../../../extra_data/tests/test_read_machinery.py . [ 69%] ../../../extra_data/tests/test_reader_mockdata.py ...................... [ 73%] ........................................... [ 80%] ../../../extra_data/tests/test_run_files_map.py . [ 81%] ../../../extra_data/tests/test_sourcedata.py ............... [ 83%] ../../../extra_data/tests/test_stacking.py ........ [ 84%] ../../../extra_data/tests/test_streamer.py .. [ 85%] ../../../extra_data/tests/test_validation.py .. [ 85%] ../../../extra_data/tests/test_voview.py ... [ 86%] ../../../extra_data/tests/test_writer.py .. [ 86%] ../../../extra_data/tests/cli/test_make_virtual_cxi.py . [ 86%] ../../../extra_data/tests/test_bad_trains.py ............FF.. [ 89%] ../../../extra_data/tests/test_components.py ..F............... [ 92%] ../../../extra_data/tests/test_copy.py . [ 92%] ../../../extra_data/tests/test_file_access.py ... [ 93%] ../../../extra_data/tests/test_keydata.py .... [ 93%] ../../../extra_data/tests/test_open_run.py ..... [ 94%] ../../../extra_data/tests/test_read_machinery.py .. [ 94%] ../../../extra_data/tests/test_reader_mockdata.py .......... 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[100%] =================================== FAILURES =================================== _____________________________ test_get_array[0.5] ______________________________ mock_fxe_raw_run = '/tmp/tmpy698gq8h' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1263: in xarray return out.unstack('train_pulse').transpose(*dim_order) /usr/lib/python3/dist-packages/xarray/core/dataarray.py:3019: in unstack ds = self._to_temp_dataset().unstack(dim, fill_value=fill_value, sparse=sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5826: in unstack result = result._unstack_once(d, stacked_indexes[d], fill_value, sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5660: in _unstack_once variables[name] = var._unstack_once( /usr/lib/python3/dist-packages/xarray/core/variable.py:1594: in _unstack_once data = create_template(self.data, shape=new_shape, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ a = array([[[[0., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.]...., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.]]]], shape=(16, 384, 256, 256), dtype=float32) kwargs = {'dtype': dtype('float32'), 'shape': (16, 256, 256, 3, 128)} xp = def empty_like(a, **kwargs): xp = get_array_namespace(a) > return xp.empty_like(a, **kwargs) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 256, 256, 3, 128) and data type float32 /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:226: MemoryError ______________________ test_get_array_with_cell_ids[0.5] _______________________ mock_fxe_raw_run = '/tmp/tmpy698gq8h' def test_get_array_with_cell_ids(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) > arr = det.get_array('image.data', subtrain_index='cellId') ../../../extra_data/tests/test_components.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1263: in xarray return out.unstack('train_pulse').transpose(*dim_order) /usr/lib/python3/dist-packages/xarray/core/dataarray.py:3019: in unstack ds = self._to_temp_dataset().unstack(dim, fill_value=fill_value, sparse=sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5826: in unstack result = result._unstack_once(d, stacked_indexes[d], fill_value, sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5660: in _unstack_once variables[name] = var._unstack_once( /usr/lib/python3/dist-packages/xarray/core/variable.py:1594: in _unstack_once data = create_template(self.data, shape=new_shape, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ a = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ..., [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(16, 384, 256, 256), dtype=uint16) kwargs = {'dtype': dtype('uint16'), 'shape': (16, 256, 256, 3, 128)} xp = def empty_like(a, **kwargs): xp = get_array_namespace(a) > return xp.empty_like(a, **kwargs) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 768. MiB for an array with shape (16, 256, 256, 3, 128) and data type uint16 /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:226: MemoryError _____________________________ test_get_array[1.0] ______________________________ mock_fxe_raw_run = '/tmp/tmpbi8dguhd' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) ../../../extra_data/components.py:117: in _out_array return np.full(shape, fill_value, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 384, 256, 256), fill_value = np.float32(nan) dtype = dtype('float32'), order = 'C' @finalize_array_function_like @set_module('numpy') def full(shape, fill_value, dtype=None, order='C', *, device=None, like=None): """ Return a new array of given shape and type, filled with `fill_value`. Parameters ---------- shape : int or sequence of ints Shape of the new array, e.g., ``(2, 3)`` or ``2``. fill_value : scalar or array_like Fill value. dtype : data-type, optional The desired data-type for the array The default, None, means ``np.array(fill_value).dtype``. order : {'C', 'F'}, optional Whether to store multidimensional data in C- or Fortran-contiguous (row- or column-wise) order in memory. device : str, optional The device on which to place the created array. Default: None. For Array-API interoperability only, so must be ``"cpu"`` if passed. .. versionadded:: 2.0.0 ${ARRAY_FUNCTION_LIKE} .. versionadded:: 1.20.0 Returns ------- out : ndarray Array of `fill_value` with the given shape, dtype, and order. See Also -------- full_like : Return a new array with shape of input filled with value. empty : Return a new uninitialized array. ones : Return a new array setting values to one. zeros : Return a new array setting values to zero. Examples -------- >>> import numpy as np >>> np.full((2, 2), np.inf) array([[inf, inf], [inf, inf]]) >>> np.full((2, 2), 10) array([[10, 10], [10, 10]]) >>> np.full((2, 2), [1, 2]) array([[1, 2], [1, 2]]) """ if like is not None: return _full_with_like( like, shape, fill_value, dtype=dtype, order=order, device=device ) if dtype is None: fill_value = asarray(fill_value) dtype = fill_value.dtype > a = empty(shape, dtype, order, device=device) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 384, 256, 256) and data type float32 /usr/lib/python3/dist-packages/numpy/_core/numeric.py:352: MemoryError _____________________________ test_get_array[1.2] ______________________________ mock_fxe_raw_run = '/tmp/tmpovn_jt7z' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) ../../../extra_data/components.py:117: in _out_array return np.full(shape, fill_value, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 384, 256, 256), fill_value = np.float32(nan) dtype = dtype('float32'), order = 'C' @finalize_array_function_like @set_module('numpy') def full(shape, fill_value, dtype=None, order='C', *, device=None, like=None): """ Return a new array of given shape and type, filled with `fill_value`. Parameters ---------- shape : int or sequence of ints Shape of the new array, e.g., ``(2, 3)`` or ``2``. fill_value : scalar or array_like Fill value. dtype : data-type, optional The desired data-type for the array The default, None, means ``np.array(fill_value).dtype``. order : {'C', 'F'}, optional Whether to store multidimensional data in C- or Fortran-contiguous (row- or column-wise) order in memory. device : str, optional The device on which to place the created array. Default: None. For Array-API interoperability only, so must be ``"cpu"`` if passed. .. versionadded:: 2.0.0 ${ARRAY_FUNCTION_LIKE} .. versionadded:: 1.20.0 Returns ------- out : ndarray Array of `fill_value` with the given shape, dtype, and order. See Also -------- full_like : Return a new array with shape of input filled with value. empty : Return a new uninitialized array. ones : Return a new array setting values to one. zeros : Return a new array setting values to zero. Examples -------- >>> import numpy as np >>> np.full((2, 2), np.inf) array([[inf, inf], [inf, inf]]) >>> np.full((2, 2), 10) array([[10, 10], [10, 10]]) >>> np.full((2, 2), [1, 2]) array([[1, 2], [1, 2]]) """ if like is not None: return _full_with_like( like, shape, fill_value, dtype=dtype, order=order, device=device ) if dtype is None: fill_value = asarray(fill_value) dtype = fill_value.dtype > a = empty(shape, dtype, order, device=device) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 384, 256, 256) and data type float32 /usr/lib/python3/dist-packages/numpy/_core/numeric.py:352: MemoryError ____________________________ test_components_array _____________________________ agipd_file_flag0 = '/tmp/tmpt4j_h5r3/CORR-R9999-AGIPD07-S00000.h5' def test_components_array(agipd_file_flag0): f = H5File(agipd_file_flag0, inc_suspect_trains=False) agipd = AGIPD1M(f, modules=[0]) > arr = agipd.get_array('image.data', pulses=np.s_[:1]) ../../../extra_data/tests/test_bad_trains.py:197: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1239: in ndarray self._read_chunk(chunk, reading_view[mod_ix], roi) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = chunk = mod_out = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ...], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(485, 2, 512, 128), dtype=uint16) roi = () def _read_chunk(self, chunk: DataChunk, mod_out, roi): """Read per-pulse data from file into an output array (of 1 module)""" # Limit to 5 GB sections of the dataset at once, so the temporary # arrays used in the workaround below are not too large. nbytes_frame = chunk.dataset.dtype.itemsize for dim in chunk.dataset.shape[1:]: nbytes_frame *= dim frame_limit = 5 * (1024 ** 3) // nbytes_frame for tgt_slice, chunk_slice in self.det._split_align_chunk( chunk, self.det.train_ids_perframe, length_limit=frame_limit ): inc_pulses_chunk = self._sel_frames[tgt_slice] if inc_pulses_chunk.sum() == 0: # No data from this chunk selected continue elif inc_pulses_chunk.all(): # All pulses in chunk chunk.dataset.read_direct( mod_out[tgt_slice], source_sel=(chunk_slice,) + roi ) continue # Read a subset of pulses from the chunk: # Reading a non-contiguous selection in HDF5 seems to be slow: # https://forum.hdfgroup.org/t/performance-reading-data-with-non-contiguous-selection/8979 # Except it's fast if you read the data to a matching selection in # memory (one weird trick). # So as a workaround, this allocates a temporary array of the same # shape as the full chunk, reads into it, and then copies the selected # data to the output array. The extra memory copy is not optimal, # but it's better than the HDF5 performance issue, at least in some # realistic cases. # N.B. tmp should only use memory for the data it contains - # zeros() uses calloc, so the OS can do virtual memory tricks. # Don't change this to zeros_like() ! > tmp = np.zeros( shape=inc_pulses_chunk.shape + chunk.dataset.shape[1:], dtype=chunk.dataset.dtype ) E ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size. ../../../extra_data/components.py:1199: ValueError __________________________ test_components_array_dup ___________________________ agipd_file_tid_high = '/tmp/tmpoc384xna/CORR-R9999-AGIPD07-S00000.h5' def test_components_array_dup(agipd_file_tid_high): f = H5File(agipd_file_tid_high, inc_suspect_trains=False) agipd = AGIPD1M(f, modules=[0]) > arr = agipd.get_array('image.data', pulses=np.s_[:1]) ../../../extra_data/tests/test_bad_trains.py:204: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1239: in ndarray self._read_chunk(chunk, reading_view[mod_ix], roi) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = chunk = mod_out = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ...], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(485, 2, 512, 128), dtype=uint16) roi = () def _read_chunk(self, chunk: DataChunk, mod_out, roi): """Read per-pulse data from file into an output array (of 1 module)""" # Limit to 5 GB sections of the dataset at once, so the temporary # arrays used in the workaround below are not too large. nbytes_frame = chunk.dataset.dtype.itemsize for dim in chunk.dataset.shape[1:]: nbytes_frame *= dim frame_limit = 5 * (1024 ** 3) // nbytes_frame for tgt_slice, chunk_slice in self.det._split_align_chunk( chunk, self.det.train_ids_perframe, length_limit=frame_limit ): inc_pulses_chunk = self._sel_frames[tgt_slice] if inc_pulses_chunk.sum() == 0: # No data from this chunk selected continue elif inc_pulses_chunk.all(): # All pulses in chunk chunk.dataset.read_direct( mod_out[tgt_slice], source_sel=(chunk_slice,) + roi ) continue # Read a subset of pulses from the chunk: # Reading a non-contiguous selection in HDF5 seems to be slow: # https://forum.hdfgroup.org/t/performance-reading-data-with-non-contiguous-selection/8979 # Except it's fast if you read the data to a matching selection in # memory (one weird trick). # So as a workaround, this allocates a temporary array of the same # shape as the full chunk, reads into it, and then copies the selected # data to the output array. The extra memory copy is not optimal, # but it's better than the HDF5 performance issue, at least in some # realistic cases. # N.B. tmp should only use memory for the data it contains - # zeros() uses calloc, so the OS can do virtual memory tricks. # Don't change this to zeros_like() ! > tmp = np.zeros( shape=inc_pulses_chunk.shape + chunk.dataset.shape[1:], dtype=chunk.dataset.dtype ) E ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size. ../../../extra_data/components.py:1199: ValueError _______________________ test_get_array_lpd_parallelgain ________________________ mock_lpd_parallelgain_run = '/tmp/tmprn72sxqp' def test_get_array_lpd_parallelgain(mock_lpd_parallelgain_run): run = RunDirectory(mock_lpd_parallelgain_run) det = LPD1M(run.select_trains(by_index[:2]), parallel_gain=True) assert det.detector_name == 'FXE_DET_LPD1M-1' > arr = det.get_array('image.data') ../../../extra_data/tests/test_components.py:187: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 600, 256, 256), dtype = dtype('uint16'), fill_value = np.uint16(0) def _out_array(shape, dtype, fill_value=None): if fill_value is None: fill_value = np.nan if dtype.kind == 'f' else 0 fill_value = dtype.type(fill_value) # Zeroed memory can be allocated faster than explicitly writing zeros if fill_value == 0: > return np.zeros(shape, dtype=dtype) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.17 GiB for an array with shape (16, 600, 256, 256) and data type uint16 ../../../extra_data/components.py:115: MemoryError =============================== warnings summary =============================== extra_data/tests/test_components.py::test_modern_corr_sources /build/reproducible-path/extra-data-1.19.0/extra_data/reader.py:282: DeprecationWarning: SPB_DET_AGIPD1M-1/DET/6CH0:xtdf is a legacy name for SPB_DET_AGIPD1M-1/CORR/6CH0:output. Access via this name will be removed for future data. return self._get_key_data(*item) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../../../extra_data/tests/test_components.py::test_get_array[0.5] - nu... FAILED ../../../extra_data/tests/test_components.py::test_get_array_with_cell_ids[0.5] FAILED ../../../extra_data/tests/test_components.py::test_get_array[1.0] - nu... FAILED ../../../extra_data/tests/test_components.py::test_get_array[1.2] - nu... FAILED ../../../extra_data/tests/test_bad_trains.py::test_components_array - ... FAILED ../../../extra_data/tests/test_bad_trains.py::test_components_array_dup FAILED ../../../extra_data/tests/test_components.py::test_get_array_lpd_parallelgain ============ 7 failed, 583 passed, 1 warning in 1424.04s (0:23:44) ============= E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.12_extra-data/build; python3.12 -m pytest {dir}/extra_data/tests I: pybuild base:311: cd /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.13_extra-data/build; python3.13 -m pytest /build/reproducible-path/extra-data-1.19.0/extra_data/tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/extra-data-1.19.0 configfile: pytest.ini plugins: typeguard-4.4.1 collected 590 items ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 0%] ../../../extra_data/tests/test_aliases.py .......... [ 2%] ../../../extra_data/tests/test_bad_trains.py . [ 2%] ../../../extra_data/tests/test_components.py F.F....F.....F............. [ 6%] [ 6%] ../../../extra_data/tests/test_copy.py .. [ 7%] ../../../extra_data/tests/test_file_access.py ......... [ 8%] ../../../extra_data/tests/test_keydata.py ................ [ 11%] ../../../extra_data/tests/test_lsxfel.py .. [ 11%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 12%] ../../../extra_data/tests/test_read_machinery.py . [ 12%] ../../../extra_data/tests/test_reader_mockdata.py ...................... [ 15%] ........................................... [ 23%] ../../../extra_data/tests/test_run_files_map.py . [ 23%] ../../../extra_data/tests/test_sourcedata.py ............... [ 25%] ../../../extra_data/tests/test_stacking.py ........ [ 27%] ../../../extra_data/tests/test_streamer.py .. [ 27%] ../../../extra_data/tests/test_validation.py .. [ 27%] ../../../extra_data/tests/test_voview.py ... [ 28%] ../../../extra_data/tests/test_writer.py .. [ 28%] ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 29%] ../../../extra_data/tests/test_aliases.py .......... [ 30%] ../../../extra_data/tests/test_bad_trains.py . [ 31%] ../../../extra_data/tests/test_components.py F.......................... [ 35%] [ 35%] ../../../extra_data/tests/test_copy.py .. [ 35%] ../../../extra_data/tests/test_file_access.py ......... [ 37%] ../../../extra_data/tests/test_keydata.py ................ [ 40%] ../../../extra_data/tests/test_lsxfel.py .. [ 40%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 40%] ../../../extra_data/tests/test_read_machinery.py . [ 41%] ../../../extra_data/tests/test_reader_mockdata.py ...................... [ 44%] ........................................... [ 52%] ../../../extra_data/tests/test_run_files_map.py . [ 52%] ../../../extra_data/tests/test_sourcedata.py ............... [ 54%] ../../../extra_data/tests/test_stacking.py ........ [ 56%] ../../../extra_data/tests/test_streamer.py .. [ 56%] ../../../extra_data/tests/test_validation.py .. [ 56%] ../../../extra_data/tests/test_voview.py ... [ 57%] ../../../extra_data/tests/test_writer.py .. [ 57%] ../../../extra_data/tests/cli/test_make_virtual_cxi.py .. [ 57%] ../../../extra_data/tests/test_aliases.py .......... [ 59%] ../../../extra_data/tests/test_bad_trains.py . [ 59%] ../../../extra_data/tests/test_components.py F.......................... [ 64%] [ 64%] ../../../extra_data/tests/test_copy.py .. [ 64%] ../../../extra_data/tests/test_file_access.py ......... [ 66%] ../../../extra_data/tests/test_keydata.py ................ [ 68%] ../../../extra_data/tests/test_lsxfel.py .. [ 69%] ../../../extra_data/tests/test_open_file_limiter.py .. [ 69%] ../../../extra_data/tests/test_read_machinery.py . [ 69%] ../../../extra_data/tests/test_reader_mockdata.py ...................... 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[ 96%] ../../../extra_data/tests/test_run_files_map.py . [ 96%] ../../../extra_data/tests/test_slice_objs.py . [ 96%] ../../../extra_data/tests/test_sourcedata.py . [ 97%] ../../../extra_data/tests/test_stacking.py ... [ 97%] ../../../extra_data/tests/test_streamer.py .. [ 97%] ../../../extra_data/tests/test_validation.py ........... [ 99%] ../../../extra_data/tests/test_voview.py . [100%] =================================== FAILURES =================================== _____________________________ test_get_array[0.5] ______________________________ mock_fxe_raw_run = '/tmp/tmpbmq12w46' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1263: in xarray return out.unstack('train_pulse').transpose(*dim_order) /usr/lib/python3/dist-packages/xarray/core/dataarray.py:3019: in unstack ds = self._to_temp_dataset().unstack(dim, fill_value=fill_value, sparse=sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5826: in unstack result = result._unstack_once(d, stacked_indexes[d], fill_value, sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5660: in _unstack_once variables[name] = var._unstack_once( /usr/lib/python3/dist-packages/xarray/core/variable.py:1594: in _unstack_once data = create_template(self.data, shape=new_shape, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ a = array([[[[0., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.]...., 0., 0., ..., 0., 0., 0.], [0., 0., 0., ..., 0., 0., 0.]]]], shape=(16, 384, 256, 256), dtype=float32) kwargs = {'dtype': dtype('float32'), 'shape': (16, 256, 256, 3, 128)} xp = def empty_like(a, **kwargs): xp = get_array_namespace(a) > return xp.empty_like(a, **kwargs) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 256, 256, 3, 128) and data type float32 /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:226: MemoryError ______________________ test_get_array_with_cell_ids[0.5] _______________________ mock_fxe_raw_run = '/tmp/tmpbmq12w46' def test_get_array_with_cell_ids(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) > arr = det.get_array('image.data', subtrain_index='cellId') ../../../extra_data/tests/test_components.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1263: in xarray return out.unstack('train_pulse').transpose(*dim_order) /usr/lib/python3/dist-packages/xarray/core/dataarray.py:3019: in unstack ds = self._to_temp_dataset().unstack(dim, fill_value=fill_value, sparse=sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5826: in unstack result = result._unstack_once(d, stacked_indexes[d], fill_value, sparse) /usr/lib/python3/dist-packages/xarray/core/dataset.py:5660: in _unstack_once variables[name] = var._unstack_once( /usr/lib/python3/dist-packages/xarray/core/variable.py:1594: in _unstack_once data = create_template(self.data, shape=new_shape, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ a = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ..., [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(16, 384, 256, 256), dtype=uint16) kwargs = {'dtype': dtype('uint16'), 'shape': (16, 256, 256, 3, 128)} xp = def empty_like(a, **kwargs): xp = get_array_namespace(a) > return xp.empty_like(a, **kwargs) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 768. MiB for an array with shape (16, 256, 256, 3, 128) and data type uint16 /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:226: MemoryError ________________________ test_ndarray_module_gaps[0.5] _________________________ mock_fxe_raw_run = '/tmp/tmpbmq12w46' def test_ndarray_module_gaps(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run, modules=[2]).select_trains(np.s_[:3]) det_data = det['image.data'] assert det_data.shape == (1, 128 * 3, 256, 256) assert det_data.ndarray().shape == (1, 128 * 3, 256, 256) > arr_w_gaps = det_data.ndarray(module_gaps=True, fill_value=7) ../../../extra_data/tests/test_components.py:177: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) ../../../extra_data/components.py:117: in _out_array return np.full(shape, fill_value, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 384, 256, 256), fill_value = np.uint16(7), dtype = dtype('uint16') order = 'C' @finalize_array_function_like @set_module('numpy') def full(shape, fill_value, dtype=None, order='C', *, device=None, like=None): """ Return a new array of given shape and type, filled with `fill_value`. Parameters ---------- shape : int or sequence of ints Shape of the new array, e.g., ``(2, 3)`` or ``2``. fill_value : scalar or array_like Fill value. dtype : data-type, optional The desired data-type for the array The default, None, means ``np.array(fill_value).dtype``. order : {'C', 'F'}, optional Whether to store multidimensional data in C- or Fortran-contiguous (row- or column-wise) order in memory. device : str, optional The device on which to place the created array. Default: None. For Array-API interoperability only, so must be ``"cpu"`` if passed. .. versionadded:: 2.0.0 ${ARRAY_FUNCTION_LIKE} .. versionadded:: 1.20.0 Returns ------- out : ndarray Array of `fill_value` with the given shape, dtype, and order. See Also -------- full_like : Return a new array with shape of input filled with value. empty : Return a new uninitialized array. ones : Return a new array setting values to one. zeros : Return a new array setting values to zero. Examples -------- >>> import numpy as np >>> np.full((2, 2), np.inf) array([[inf, inf], [inf, inf]]) >>> np.full((2, 2), 10) array([[10, 10], [10, 10]]) >>> np.full((2, 2), [1, 2]) array([[1, 2], [1, 2]]) """ if like is not None: return _full_with_like( like, shape, fill_value, dtype=dtype, order=order, device=device ) if dtype is None: fill_value = asarray(fill_value) dtype = fill_value.dtype > a = empty(shape, dtype, order, device=device) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 768. MiB for an array with shape (16, 384, 256, 256) and data type uint16 /usr/lib/python3/dist-packages/numpy/_core/numeric.py:352: MemoryError ___________________________ test_select_trains[0.5] ____________________________ mock_fxe_raw_run = '/tmp/tmpbmq12w46' def test_select_trains(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(np.s_[:20])) assert len(det.train_ids) == 20 det = det.select_trains(np.s_[:2]) assert len(det.train_ids) == 2 > arr = det.get_array('image.data') ../../../extra_data/tests/test_components.py:433: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 256, 256, 256), dtype = dtype('uint16'), fill_value = np.uint16(0) def _out_array(shape, dtype, fill_value=None): if fill_value is None: fill_value = np.nan if dtype.kind == 'f' else 0 fill_value = dtype.type(fill_value) # Zeroed memory can be allocated faster than explicitly writing zeros if fill_value == 0: > return np.zeros(shape, dtype=dtype) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 512. MiB for an array with shape (16, 256, 256, 256) and data type uint16 ../../../extra_data/components.py:115: MemoryError _____________________________ test_get_array[1.0] ______________________________ mock_fxe_raw_run = '/tmp/tmpvhr1i32n' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) ../../../extra_data/components.py:117: in _out_array return np.full(shape, fill_value, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 384, 256, 256), fill_value = np.float32(nan) dtype = dtype('float32'), order = 'C' @finalize_array_function_like @set_module('numpy') def full(shape, fill_value, dtype=None, order='C', *, device=None, like=None): """ Return a new array of given shape and type, filled with `fill_value`. Parameters ---------- shape : int or sequence of ints Shape of the new array, e.g., ``(2, 3)`` or ``2``. fill_value : scalar or array_like Fill value. dtype : data-type, optional The desired data-type for the array The default, None, means ``np.array(fill_value).dtype``. order : {'C', 'F'}, optional Whether to store multidimensional data in C- or Fortran-contiguous (row- or column-wise) order in memory. device : str, optional The device on which to place the created array. Default: None. For Array-API interoperability only, so must be ``"cpu"`` if passed. .. versionadded:: 2.0.0 ${ARRAY_FUNCTION_LIKE} .. versionadded:: 1.20.0 Returns ------- out : ndarray Array of `fill_value` with the given shape, dtype, and order. See Also -------- full_like : Return a new array with shape of input filled with value. empty : Return a new uninitialized array. ones : Return a new array setting values to one. zeros : Return a new array setting values to zero. Examples -------- >>> import numpy as np >>> np.full((2, 2), np.inf) array([[inf, inf], [inf, inf]]) >>> np.full((2, 2), 10) array([[10, 10], [10, 10]]) >>> np.full((2, 2), [1, 2]) array([[1, 2], [1, 2]]) """ if like is not None: return _full_with_like( like, shape, fill_value, dtype=dtype, order=order, device=device ) if dtype is None: fill_value = asarray(fill_value) dtype = fill_value.dtype > a = empty(shape, dtype, order, device=device) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 384, 256, 256) and data type float32 /usr/lib/python3/dist-packages/numpy/_core/numeric.py:352: MemoryError _____________________________ test_get_array[1.2] ______________________________ mock_fxe_raw_run = '/tmp/tmpkf86yqaj' def test_get_array(mock_fxe_raw_run): run = RunDirectory(mock_fxe_raw_run) det = LPD1M(run.select_trains(by_index[:3])) assert det.detector_name == 'FXE_DET_LPD1M-1' arr = det.get_array('image.data') assert arr.dtype == np.uint16 assert arr.shape == (16, 3, 128, 256, 256) assert arr.dims == ('module', 'train', 'pulse', 'slow_scan', 'fast_scan') arr = det.get_array('image.data', pulses=by_index[:10], unstack_pulses=False) assert arr.shape == (16, 30, 256, 256) assert arr.dtype == np.uint16 assert arr.dims == ('module', 'train_pulse', 'slow_scan', 'fast_scan') # fill value with pytest.raises(ValueError): det.get_array('image.data', fill_value=np.nan) > arr = det.get_array('image.data', astype=np.float32) ../../../extra_data/tests/test_components.py:33: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) ../../../extra_data/components.py:117: in _out_array return np.full(shape, fill_value, dtype=dtype) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 384, 256, 256), fill_value = np.float32(nan) dtype = dtype('float32'), order = 'C' @finalize_array_function_like @set_module('numpy') def full(shape, fill_value, dtype=None, order='C', *, device=None, like=None): """ Return a new array of given shape and type, filled with `fill_value`. Parameters ---------- shape : int or sequence of ints Shape of the new array, e.g., ``(2, 3)`` or ``2``. fill_value : scalar or array_like Fill value. dtype : data-type, optional The desired data-type for the array The default, None, means ``np.array(fill_value).dtype``. order : {'C', 'F'}, optional Whether to store multidimensional data in C- or Fortran-contiguous (row- or column-wise) order in memory. device : str, optional The device on which to place the created array. Default: None. For Array-API interoperability only, so must be ``"cpu"`` if passed. .. versionadded:: 2.0.0 ${ARRAY_FUNCTION_LIKE} .. versionadded:: 1.20.0 Returns ------- out : ndarray Array of `fill_value` with the given shape, dtype, and order. See Also -------- full_like : Return a new array with shape of input filled with value. empty : Return a new uninitialized array. ones : Return a new array setting values to one. zeros : Return a new array setting values to zero. Examples -------- >>> import numpy as np >>> np.full((2, 2), np.inf) array([[inf, inf], [inf, inf]]) >>> np.full((2, 2), 10) array([[10, 10], [10, 10]]) >>> np.full((2, 2), [1, 2]) array([[1, 2], [1, 2]]) """ if like is not None: return _full_with_like( like, shape, fill_value, dtype=dtype, order=order, device=device ) if dtype is None: fill_value = asarray(fill_value) dtype = fill_value.dtype > a = empty(shape, dtype, order, device=device) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.50 GiB for an array with shape (16, 384, 256, 256) and data type float32 /usr/lib/python3/dist-packages/numpy/_core/numeric.py:352: MemoryError ____________________________ test_components_array _____________________________ agipd_file_flag0 = '/tmp/tmp6gly_b7p/CORR-R9999-AGIPD07-S00000.h5' def test_components_array(agipd_file_flag0): f = H5File(agipd_file_flag0, inc_suspect_trains=False) agipd = AGIPD1M(f, modules=[0]) > arr = agipd.get_array('image.data', pulses=np.s_[:1]) ../../../extra_data/tests/test_bad_trains.py:197: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1239: in ndarray self._read_chunk(chunk, reading_view[mod_ix], roi) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = chunk = mod_out = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ...], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(485, 2, 512, 128), dtype=uint16) roi = () def _read_chunk(self, chunk: DataChunk, mod_out, roi): """Read per-pulse data from file into an output array (of 1 module)""" # Limit to 5 GB sections of the dataset at once, so the temporary # arrays used in the workaround below are not too large. nbytes_frame = chunk.dataset.dtype.itemsize for dim in chunk.dataset.shape[1:]: nbytes_frame *= dim frame_limit = 5 * (1024 ** 3) // nbytes_frame for tgt_slice, chunk_slice in self.det._split_align_chunk( chunk, self.det.train_ids_perframe, length_limit=frame_limit ): inc_pulses_chunk = self._sel_frames[tgt_slice] if inc_pulses_chunk.sum() == 0: # No data from this chunk selected continue elif inc_pulses_chunk.all(): # All pulses in chunk chunk.dataset.read_direct( mod_out[tgt_slice], source_sel=(chunk_slice,) + roi ) continue # Read a subset of pulses from the chunk: # Reading a non-contiguous selection in HDF5 seems to be slow: # https://forum.hdfgroup.org/t/performance-reading-data-with-non-contiguous-selection/8979 # Except it's fast if you read the data to a matching selection in # memory (one weird trick). # So as a workaround, this allocates a temporary array of the same # shape as the full chunk, reads into it, and then copies the selected # data to the output array. The extra memory copy is not optimal, # but it's better than the HDF5 performance issue, at least in some # realistic cases. # N.B. tmp should only use memory for the data it contains - # zeros() uses calloc, so the OS can do virtual memory tricks. # Don't change this to zeros_like() ! > tmp = np.zeros( shape=inc_pulses_chunk.shape + chunk.dataset.shape[1:], dtype=chunk.dataset.dtype ) E ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size. ../../../extra_data/components.py:1199: ValueError __________________________ test_components_array_dup ___________________________ agipd_file_tid_high = '/tmp/tmpp5qyictc/CORR-R9999-AGIPD07-S00000.h5' def test_components_array_dup(agipd_file_tid_high): f = H5File(agipd_file_tid_high, inc_suspect_trains=False) agipd = AGIPD1M(f, modules=[0]) > arr = agipd.get_array('image.data', pulses=np.s_[:1]) ../../../extra_data/tests/test_bad_trains.py:204: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1239: in ndarray self._read_chunk(chunk, reading_view[mod_ix], roi) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = chunk = mod_out = array([[[[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0], ..., ...], [0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, 0]]]], shape=(485, 2, 512, 128), dtype=uint16) roi = () def _read_chunk(self, chunk: DataChunk, mod_out, roi): """Read per-pulse data from file into an output array (of 1 module)""" # Limit to 5 GB sections of the dataset at once, so the temporary # arrays used in the workaround below are not too large. nbytes_frame = chunk.dataset.dtype.itemsize for dim in chunk.dataset.shape[1:]: nbytes_frame *= dim frame_limit = 5 * (1024 ** 3) // nbytes_frame for tgt_slice, chunk_slice in self.det._split_align_chunk( chunk, self.det.train_ids_perframe, length_limit=frame_limit ): inc_pulses_chunk = self._sel_frames[tgt_slice] if inc_pulses_chunk.sum() == 0: # No data from this chunk selected continue elif inc_pulses_chunk.all(): # All pulses in chunk chunk.dataset.read_direct( mod_out[tgt_slice], source_sel=(chunk_slice,) + roi ) continue # Read a subset of pulses from the chunk: # Reading a non-contiguous selection in HDF5 seems to be slow: # https://forum.hdfgroup.org/t/performance-reading-data-with-non-contiguous-selection/8979 # Except it's fast if you read the data to a matching selection in # memory (one weird trick). # So as a workaround, this allocates a temporary array of the same # shape as the full chunk, reads into it, and then copies the selected # data to the output array. The extra memory copy is not optimal, # but it's better than the HDF5 performance issue, at least in some # realistic cases. # N.B. tmp should only use memory for the data it contains - # zeros() uses calloc, so the OS can do virtual memory tricks. # Don't change this to zeros_like() ! > tmp = np.zeros( shape=inc_pulses_chunk.shape + chunk.dataset.shape[1:], dtype=chunk.dataset.dtype ) E ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size. ../../../extra_data/components.py:1199: ValueError _______________________ test_get_array_lpd_parallelgain ________________________ mock_lpd_parallelgain_run = '/tmp/tmpqyk7lgdd' def test_get_array_lpd_parallelgain(mock_lpd_parallelgain_run): run = RunDirectory(mock_lpd_parallelgain_run) det = LPD1M(run.select_trains(by_index[:2]), parallel_gain=True) assert det.detector_name == 'FXE_DET_LPD1M-1' > arr = det.get_array('image.data') ../../../extra_data/tests/test_components.py:187: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../extra_data/components.py:746: in get_array return self[key].select_pulses(pulses).xarray( ../../../extra_data/components.py:1256: in xarray arr = self.ndarray(fill_value=fill_value, roi=roi, astype=astype) ../../../extra_data/components.py:1225: in ndarray out = _out_array(out_shape, dtype, fill_value=fill_value) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ shape = (16, 600, 256, 256), dtype = dtype('uint16'), fill_value = np.uint16(0) def _out_array(shape, dtype, fill_value=None): if fill_value is None: fill_value = np.nan if dtype.kind == 'f' else 0 fill_value = dtype.type(fill_value) # Zeroed memory can be allocated faster than explicitly writing zeros if fill_value == 0: > return np.zeros(shape, dtype=dtype) E numpy._core._exceptions._ArrayMemoryError: Unable to allocate 1.17 GiB for an array with shape (16, 600, 256, 256) and data type uint16 ../../../extra_data/components.py:115: MemoryError =============================== warnings summary =============================== extra_data/tests/test_components.py::test_modern_corr_sources /build/reproducible-path/extra-data-1.19.0/extra_data/reader.py:282: DeprecationWarning: SPB_DET_AGIPD1M-1/DET/4CH0:xtdf is a legacy name for SPB_DET_AGIPD1M-1/CORR/4CH0:output. Access via this name will be removed for future data. return self._get_key_data(*item) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../../../extra_data/tests/test_components.py::test_get_array[0.5] - nu... FAILED ../../../extra_data/tests/test_components.py::test_get_array_with_cell_ids[0.5] FAILED ../../../extra_data/tests/test_components.py::test_ndarray_module_gaps[0.5] FAILED ../../../extra_data/tests/test_components.py::test_select_trains[0.5] FAILED ../../../extra_data/tests/test_components.py::test_get_array[1.0] - nu... FAILED ../../../extra_data/tests/test_components.py::test_get_array[1.2] - nu... FAILED ../../../extra_data/tests/test_bad_trains.py::test_components_array - ... FAILED ../../../extra_data/tests/test_bad_trains.py::test_components_array_dup FAILED ../../../extra_data/tests/test_components.py::test_get_array_lpd_parallelgain ============ 9 failed, 581 passed, 1 warning in 1388.40s (0:23:08) ============= E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/extra-data-1.19.0/.pybuild/cpython3_3.13_extra-data/build; python3.13 -m pytest {dir}/extra_data/tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13 make: *** [debian/rules:7: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20894 and its subdirectories