I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 10 00:12:11 +14 2025 I: pbuilder-time-stamp: 1736417531 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [golang-github-biogo-biogo_1.0.4-1.dsc] I: copying [./golang-github-biogo-biogo_1.0.4.orig.tar.gz] I: copying [./golang-github-biogo-biogo_1.0.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./golang-github-biogo-biogo_1.0.4-1.dsc: unsupported subcommand dpkg-source: info: extracting golang-github-biogo-biogo in golang-github-biogo-biogo-1.0.4 dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.4.orig.tar.gz dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15879/tmp/hooks/D01_modify_environment starting debug: Running on virt32z. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 9 10:12 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/15879/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/15879/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=ebbd58ca8890460386d1845f0e553c87 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=15879 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp8QQLlG/pbuilderrc_7Kc0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp8QQLlG/b2 --logfile b2/build.log golang-github-biogo-biogo_1.0.4-1.dsc' SUDO_GID=110 SUDO_UID=103 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15879/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-github-biogo-graph-dev, golang-github-biogo-store-dev, golang-gopkg-check.v1-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19561 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-graph-dev; however: Package golang-github-biogo-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-store-dev; however: Package golang-github-biogo-store-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however: Package golang-gopkg-check.v1-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.23-go{a} golang-1.23-src{a} golang-any{a} golang-github-biogo-graph-dev{a} golang-github-biogo-hts-dev{a} golang-github-biogo-store-dev{a} golang-github-creack-pty-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx pkgconf wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 72.2 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-4 [196 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-14 [84.4 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-4 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-4 [1489 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf debhelper all 13.23 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf dh-golang all 1.62 [24.7 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf golang-1.23-src all 1.23.4-2 [19.1 MB] Get: 33 http://deb.debian.org/debian unstable/main armhf golang-1.23-go armhf 1.23.4-2 [23.6 MB] Get: 34 http://deb.debian.org/debian unstable/main armhf golang-src all 2:1.23~2 [5088 B] Get: 35 http://deb.debian.org/debian unstable/main armhf golang-go armhf 2:1.23~2 [44.3 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf golang-any armhf 2:1.23~2 [5172 B] Get: 37 http://deb.debian.org/debian unstable/main armhf golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf golang-golang-x-mod-dev all 0.19.0-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf golang-golang-x-sys-dev all 0.22.0-1 [431 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf golang-golang-x-term-dev all 0.22.0-1 [14.8 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf golang-golang-x-text-dev all 0.16.0-1 [4003 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf golang-golang-x-net-dev all 1:0.27.0-1 [898 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf golang-golang-x-tools-dev all 1:0.23.0+ds-1 [1593 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf golang-github-biogo-graph-dev all 0.0~git20150317.057c198-3 [12.3 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf golang-github-biogo-store-dev all 0.0~git20200525.8c94ae1-2 [34.3 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf golang-github-biogo-hts-dev all 1.4.5+dfsg1-1 [319 kB] Fetched 72.2 MB in 29s (2523 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19561 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-4_armhf.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-14_armhf.deb ... Unpacking bsdextrautils (2.40.2-14) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../23-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-6_armhf.deb ... Unpacking libicu72:armhf (72.1-6) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-4_armhf.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package dh-golang. Preparing to unpack .../30-dh-golang_1.62_all.deb ... Unpacking dh-golang (1.62) ... Selecting previously unselected package golang-1.23-src. Preparing to unpack .../31-golang-1.23-src_1.23.4-2_all.deb ... Unpacking golang-1.23-src (1.23.4-2) ... Selecting previously unselected package golang-1.23-go. Preparing to unpack .../32-golang-1.23-go_1.23.4-2_armhf.deb ... Unpacking golang-1.23-go (1.23.4-2) ... Selecting previously unselected package golang-src. Preparing to unpack .../33-golang-src_2%3a1.23~2_all.deb ... Unpacking golang-src (2:1.23~2) ... Selecting previously unselected package golang-go:armhf. Preparing to unpack .../34-golang-go_2%3a1.23~2_armhf.deb ... Unpacking golang-go:armhf (2:1.23~2) ... Selecting previously unselected package golang-any:armhf. Preparing to unpack .../35-golang-any_2%3a1.23~2_armhf.deb ... Unpacking golang-any:armhf (2:1.23~2) ... Selecting previously unselected package golang-github-creack-pty-dev. Preparing to unpack .../36-golang-github-creack-pty-dev_1.1.21-1_all.deb ... Unpacking golang-github-creack-pty-dev (1.1.21-1) ... Selecting previously unselected package golang-github-kr-text-dev. Preparing to unpack .../37-golang-github-kr-text-dev_0.2.0-2_all.deb ... Unpacking golang-github-kr-text-dev (0.2.0-2) ... Selecting previously unselected package golang-golang-x-mod-dev. Preparing to unpack .../38-golang-golang-x-mod-dev_0.19.0-1_all.deb ... Unpacking golang-golang-x-mod-dev (0.19.0-1) ... Selecting previously unselected package golang-golang-x-sys-dev. Preparing to unpack .../39-golang-golang-x-sys-dev_0.22.0-1_all.deb ... Unpacking golang-golang-x-sys-dev (0.22.0-1) ... Selecting previously unselected package golang-github-yuin-goldmark-dev. Preparing to unpack .../40-golang-github-yuin-goldmark-dev_1.7.4-1_all.deb ... Unpacking golang-github-yuin-goldmark-dev (1.7.4-1) ... Selecting previously unselected package golang-golang-x-term-dev. Preparing to unpack .../41-golang-golang-x-term-dev_0.22.0-1_all.deb ... Unpacking golang-golang-x-term-dev (0.22.0-1) ... Selecting previously unselected package golang-golang-x-text-dev. Preparing to unpack .../42-golang-golang-x-text-dev_0.16.0-1_all.deb ... Unpacking golang-golang-x-text-dev (0.16.0-1) ... Selecting previously unselected package golang-golang-x-crypto-dev. Preparing to unpack .../43-golang-golang-x-crypto-dev_1%3a0.25.0-1_all.deb ... Unpacking golang-golang-x-crypto-dev (1:0.25.0-1) ... 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Unpacking golang-github-kr-pretty-dev (0.3.1-1) ... Selecting previously unselected package golang-gopkg-check.v1-dev. Preparing to unpack .../49-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ... Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Selecting previously unselected package golang-github-biogo-graph-dev. Preparing to unpack .../50-golang-github-biogo-graph-dev_0.0~git20150317.057c198-3_all.deb ... Unpacking golang-github-biogo-graph-dev (0.0~git20150317.057c198-3) ... Selecting previously unselected package golang-github-biogo-store-dev. Preparing to unpack .../51-golang-github-biogo-store-dev_0.0~git20200525.8c94ae1-2_all.deb ... Unpacking golang-github-biogo-store-dev (0.0~git20200525.8c94ae1-2) ... Selecting previously unselected package golang-github-ulikunitz-xz-dev. Preparing to unpack .../52-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ... Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ... Selecting previously unselected package golang-github-biogo-hts-dev. Preparing to unpack .../53-golang-github-biogo-hts-dev_1.4.5+dfsg1-1_all.deb ... Unpacking golang-github-biogo-hts-dev (1.4.5+dfsg1-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.2-14) ... Setting up golang-github-creack-pty-dev (1.1.21-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.23) ... Setting up golang-golang-x-sys-dev (0.22.0-1) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up golang-golang-x-term-dev (0.22.0-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up golang-github-yuin-goldmark-dev (1.7.4-1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up golang-golang-x-sync-dev (0.7.0-1) ... Setting up golang-golang-x-mod-dev (0.19.0-1) ... Setting up golang-1.23-src (1.23.4-2) ... Setting up autopoint (0.22.5-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up golang-golang-x-text-dev (0.16.0-1) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up golang-golang-x-crypto-dev (1:0.25.0-1) ... Setting up golang-src (2:1.23~2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up golang-1.23-go (1.23.4-2) ... Setting up golang-github-biogo-hts-dev (1.4.5+dfsg1-1) ... Setting up golang-golang-x-net-dev (1:0.27.0-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up golang-go:armhf (2:1.23~2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up golang-golang-x-tools-dev (1:0.23.0+ds-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up golang-any:armhf (2:1.23~2) ... Setting up golang-github-rogpeppe-go-internal-dev (1.12.0-3) ... Setting up golang-github-kr-pretty-dev (0.3.1-1) ... Setting up debhelper (13.23) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up golang-github-biogo-graph-dev (0.0~git20150317.057c198-3) ... Setting up dh-golang (1.62) ... Setting up golang-github-biogo-store-dev (0.0~git20200525.8c94ae1-2) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/15879/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/15879/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/golang-github-biogo-biogo-1.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.4-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-biogo dpkg-buildpackage: info: source version 1.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util internal/goarch internal/unsafeheader github.com/biogo/biogo internal/cpu internal/byteorder internal/coverage/rtcov internal/abi internal/chacha8rand internal/godebugs internal/bytealg internal/goexperiment internal/goos internal/profilerecord internal/runtime/atomic internal/runtime/syscall internal/stringslite runtime/internal/math runtime/internal/sys cmp internal/itoa internal/race internal/runtime/exithook math/bits unicode/utf8 sync/atomic unicode math internal/asan internal/msan encoding github.com/biogo/store/llrb runtime log/internal image/color iter internal/reflectlite sync slices internal/bisect internal/testlog errors sort internal/godebug strconv io internal/oserror path strings syscall hash container/heap bytes reflect github.com/biogo/biogo/feat internal/saferio github.com/biogo/biogo/io/featio bufio math/rand github.com/biogo/store/interval hash/adler32 github.com/biogo/biogo/feat/gene internal/syscall/unix internal/syscall/execenv time io/fs internal/poll encoding/binary internal/fmtsort internal/filepathlite os fmt io/ioutil github.com/biogo/biogo/alphabet encoding/gob text/tabwriter github.com/biogo/biogo/util encoding/csv github.com/biogo/graph log github.com/biogo/biogo/seq github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/seq/linear github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/fasta compress/flate github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat/genome github.com/biogo/biogo/morass github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 compress/zlib github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/complexity github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/align/pals github.com/biogo/biogo/seq/multi github.com/biogo/hts/fai github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/pwm github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/quality dh_auto_test -O--builddirectory=_build -O--buildsystem=golang cd _build && go test -vet=off -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util ? github.com/biogo/biogo [no test files] ? github.com/biogo/biogo/align/matrix [no test files] === RUN Test OK: 2 passed --- PASS: Test (0.02s) === RUN ExampleFitted_Align --- PASS: ExampleFitted_Align (0.00s) === RUN ExampleFittedAffine_Align --- PASS: ExampleFittedAffine_Align (0.00s) === RUN ExampleNW_Align --- PASS: ExampleNW_Align (0.00s) === RUN ExampleNWAffine_Align --- PASS: ExampleNWAffine_Align (0.00s) === RUN ExampleSW_Align_a --- PASS: ExampleSW_Align_a (0.00s) === RUN ExampleSW_Align_b --- PASS: ExampleSW_Align_b (0.00s) === RUN ExampleSWAffine_Align --- PASS: ExampleSWAffine_Align (0.00s) PASS ok github.com/biogo/biogo/align 0.091s === RUN Test OK: 5 passed --- PASS: Test (0.04s) PASS ok github.com/biogo/biogo/align/pals 0.079s === RUN Test OK: 1 passed --- PASS: Test (0.03s) PASS ok github.com/biogo/biogo/align/pals/dp 0.081s === RUN Test OK: 1 passed --- PASS: Test (0.02s) PASS ok github.com/biogo/biogo/align/pals/filter 0.104s === RUN Test OK: 10 passed --- PASS: Test (0.11s) === RUN Example_allValid --- PASS: Example_allValid (0.00s) === RUN Example_complement --- PASS: Example_complement (0.00s) PASS ok github.com/biogo/biogo/alphabet 0.140s === RUN Test OK: 4 passed --- PASS: Test (4.14s) PASS ok github.com/biogo/biogo/complexity 4.216s === RUN Test OK: 1 passed --- PASS: Test (0.01s) === RUN ExampleMap --- PASS: ExampleMap (0.00s) === RUN ExamplePromiseMap --- PASS: ExamplePromiseMap (1.03s) === RUN ExampleLazily --- PASS: ExampleLazily (0.00s) PASS ok github.com/biogo/biogo/concurrent 1.104s === RUN Test OK: 3 passed, 1 skipped --- PASS: Test (0.00s) PASS ok github.com/biogo/biogo/errors 0.073s ? github.com/biogo/biogo/feat/genome [no test files] ? github.com/biogo/biogo/feat/genome/cow/bt7 [no test files] === RUN Test OK: 6 passed --- PASS: Test (0.06s) PASS ok github.com/biogo/biogo/feat 0.112s === RUN Test OK: 4 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/feat/gene 0.056s ? github.com/biogo/biogo/feat/genome/drosophila/dm3 [no test files] ? github.com/biogo/biogo/feat/genome/human/hg19 [no test files] ? github.com/biogo/biogo/feat/genome/mouse/mm10 [no test files] ? github.com/biogo/biogo/io/seqio/fai [no test files] ? github.com/biogo/biogo/pwm [no test files] === RUN Test runtime: out of memory: cannot allocate 272629760-byte block (2809757696 in use) fatal error: out of memory goroutine 18 gp=0x1403688 m=2 mp=0x1448508 [running]: runtime.throw({0x29a499, 0xd}) /usr/lib/go-1.23/src/runtime/panic.go:1067 +0x34 fp=0x1474a70 sp=0x1474a5c pc=0x906bc runtime.(*mcache).allocLarge(0xb6f8a538, 0x10000004, 0x1) /usr/lib/go-1.23/src/runtime/mcache.go:236 +0x1c4 fp=0x1474a9c sp=0x1474a70 pc=0x24cd8 runtime.mallocgc(0x10000004, 0x269520, 0x1) /usr/lib/go-1.23/src/runtime/malloc.go:1177 +0x708 fp=0x1474af4 sp=0x1474a9c pc=0x8af90 runtime.makeslice(0x269520, 0x4000001, 0x4000001) /usr/lib/go-1.23/src/runtime/slice.go:116 +0x9c fp=0x1474b08 sp=0x1474af4 pc=0x92b38 github.com/biogo/biogo/index/kmerindex.New(0xd, 0x1462e00) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex.go:71 +0xa0 fp=0x1474b30 sp=0x1474b08 pc=0x242cf4 github.com/biogo/biogo/index/kmerindex.(*S).TestKmerPositions(0x142e2a0, 0x1470168) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:85 +0x50 fp=0x1474ca8 sp=0x1474b30 pc=0x244a00 runtime.call16(0x146ce80, 0x72fa7a0, 0x142ed10, 0x8, 0x8, 0x8, 0x1474d50) /usr/lib/go-1.23/src/runtime/asm_arm.s:513 +0x4c fp=0x1474cbc sp=0x1474ca8 pc=0x96524 reflect.Value.call({0x2920b0, 0x142e2a0, 0x8a13}, {0x297e83, 0x4}, {0x1474f84, 0x1, 0x1}) /usr/lib/go-1.23/src/reflect/value.go:581 +0x8c0 fp=0x1474ee4 sp=0x1474cbc pc=0x11041c reflect.Value.Call({0x2920b0, 0x142e2a0, 0x8a13}, {0x14c5f84, 0x1, 0x1}) /usr/lib/go-1.23/src/reflect/value.go:365 +0x7c fp=0x1474f20 sp=0x1474ee4 pc=0x10f988 gopkg.in/check%2ev1.(*suiteRunner).forkTest.func1(0x1470168) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:781 +0x5fc fp=0x1474fb8 sp=0x1474f20 pc=0x237cb8 gopkg.in/check%2ev1.(*suiteRunner).forkCall.func1() /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:675 +0x94 fp=0x1474fec sp=0x1474fb8 pc=0x237018 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1474fec sp=0x1474fec pc=0x97d24 created by gopkg.in/check%2ev1.(*suiteRunner).forkCall in goroutine 6 /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:672 +0x22c goroutine 1 gp=0x1402128 m=nil [chan receive]: runtime.gopark(0x2aa0c4, 0x1418334, 0xe, 0x7, 0x2) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1c9bc78 sp=0x1c9bc64 pc=0x907fc runtime.chanrecv(0x1418300, 0x14a1cef, 0x1) /usr/lib/go-1.23/src/runtime/chan.go:639 +0x4e0 fp=0x1c9bcb4 sp=0x1c9bc78 pc=0x18550 runtime.chanrecv1(0x1418300, 0x14a1cef) /usr/lib/go-1.23/src/runtime/chan.go:489 +0x20 fp=0x1c9bcc8 sp=0x1c9bcb4 pc=0x18040 testing.(*T).Run(0x14b6008, {0x297d37, 0x4}, 0x2a9fc4) /usr/lib/go-1.23/src/testing/testing.go:1751 +0x3f4 fp=0x1c9bd40 sp=0x1c9bcc8 pc=0x1565ac testing.runTests.func1(0x14b6008) /usr/lib/go-1.23/src/testing/testing.go:2168 +0x48 fp=0x1c9bd60 sp=0x1c9bd40 pc=0x158888 testing.tRunner(0x14b6008, 0x14a1e1c) /usr/lib/go-1.23/src/testing/testing.go:1690 +0x124 fp=0x1c9bdc0 sp=0x1c9bd60 pc=0x155710 testing.runTests(0x140c160, {0x452e90, 0x1, 0x1}, {0xc1d806fe1ccfc249, 0x8bb33eed0d, 0x458c48}) /usr/lib/go-1.23/src/testing/testing.go:2166 +0x3dc fp=0x1c9be2c sp=0x1c9bdc0 pc=0x158738 testing.(*M).Run(0x1480050) /usr/lib/go-1.23/src/testing/testing.go:2034 +0x5f8 fp=0x1c9bf64 sp=0x1c9be2c pc=0x1570e8 main.main() _testmain.go:45 +0xc8 fp=0x1c9bfa8 sp=0x1c9bf64 pc=0x247c18 runtime.main() /usr/lib/go-1.23/src/runtime/proc.go:272 +0x2ec fp=0x1c9bfec sp=0x1c9bfa8 pc=0x53408 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1c9bfec sp=0x1c9bfec pc=0x97d24 goroutine 2 gp=0x1402488 m=nil [force gc (idle)]: runtime.gopark(0x2aa23c, 0x458928, 0x11, 0xa, 0x1) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1444fd4 sp=0x1444fc0 pc=0x907fc runtime.goparkunlock(...) /usr/lib/go-1.23/src/runtime/proc.go:430 runtime.forcegchelper() /usr/lib/go-1.23/src/runtime/proc.go:337 +0xe4 fp=0x1444fec sp=0x1444fd4 pc=0x53874 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1444fec sp=0x1444fec pc=0x97d24 created by runtime.init.6 in goroutine 1 /usr/lib/go-1.23/src/runtime/proc.go:325 +0x1c goroutine 3 gp=0x14027e8 m=nil [GC sweep wait]: runtime.gopark(0x2aa23c, 0x458ad0, 0xc, 0x9, 0x1) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x14457c4 sp=0x14457b0 pc=0x907fc runtime.goparkunlock(...) /usr/lib/go-1.23/src/runtime/proc.go:430 runtime.bgsweep(0x1418040) /usr/lib/go-1.23/src/runtime/mgcsweep.go:317 +0x11c fp=0x14457e4 sp=0x14457c4 pc=0x39cf8 runtime.gcenable.gowrap1() /usr/lib/go-1.23/src/runtime/mgc.go:204 +0x28 fp=0x14457ec sp=0x14457e4 pc=0x29ad8 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x14457ec sp=0x14457ec pc=0x97d24 created by runtime.gcenable in goroutine 1 /usr/lib/go-1.23/src/runtime/mgc.go:204 +0x74 goroutine 4 gp=0x1402908 m=nil [GC scavenge wait]: runtime.gopark(0x2aa23c, 0x458db0, 0xd, 0xa, 0x2) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1445fb4 sp=0x1445fa0 pc=0x907fc runtime.goparkunlock(...) /usr/lib/go-1.23/src/runtime/proc.go:430 runtime.(*scavengerState).park(0x458db0) /usr/lib/go-1.23/src/runtime/mgcscavenge.go:425 +0x68 fp=0x1445fc8 sp=0x1445fb4 pc=0x37028 runtime.bgscavenge(0x1418040) /usr/lib/go-1.23/src/runtime/mgcscavenge.go:658 +0x60 fp=0x1445fe4 sp=0x1445fc8 pc=0x37758 runtime.gcenable.gowrap2() /usr/lib/go-1.23/src/runtime/mgc.go:205 +0x28 fp=0x1445fec sp=0x1445fe4 pc=0x29a84 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1445fec sp=0x1445fec pc=0x97d24 created by runtime.gcenable in goroutine 1 /usr/lib/go-1.23/src/runtime/mgc.go:205 +0xbc goroutine 5 gp=0x1402c68 m=nil [finalizer wait]: runtime.gopark(0x2aa0e4, 0x462d5c, 0x10, 0xa, 0x1) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x144478c sp=0x1444778 pc=0x907fc runtime.runfinq() /usr/lib/go-1.23/src/runtime/mfinal.go:193 +0x110 fp=0x14447ec sp=0x144478c pc=0x288f8 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x14447ec sp=0x14447ec pc=0x97d24 created by runtime.createfing in goroutine 1 /usr/lib/go-1.23/src/runtime/mfinal.go:163 +0x5c goroutine 6 gp=0x1403448 m=nil [chan receive]: runtime.gopark(0x2aa0c4, 0x1462374, 0xe, 0x7, 0x2) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1476e24 sp=0x1476e10 pc=0x907fc runtime.chanrecv(0x1462340, 0x0, 0x1) /usr/lib/go-1.23/src/runtime/chan.go:639 +0x4e0 fp=0x1476e60 sp=0x1476e24 pc=0x18550 runtime.chanrecv1(0x1462340, 0x0) /usr/lib/go-1.23/src/runtime/chan.go:489 +0x20 fp=0x1476e74 sp=0x1476e60 pc=0x18040 gopkg.in/check%2ev1.(*suiteRunner).runTest(...) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:819 gopkg.in/check%2ev1.(*suiteRunner).run(0x14800f0) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:624 +0x280 fp=0x1476e9c sp=0x1476e74 pc=0x236c7c gopkg.in/check%2ev1.Run({0x2920b0, 0x142e2a0}, 0x144674c) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:92 +0x38 fp=0x1476eb0 sp=0x1476e9c pc=0x23c508 gopkg.in/check%2ev1.RunAll(0x1476f4c) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:84 +0x84 fp=0x1476ee8 sp=0x1476eb0 pc=0x23c368 gopkg.in/check%2ev1.TestingT(0x14b6108) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:72 +0x298 fp=0x1476f78 sp=0x1476ee8 pc=0x23c044 github.com/biogo/biogo/index/kmerindex.Test(0x14b6108) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:20 +0x1c fp=0x1476f80 sp=0x1476f78 pc=0x243a98 testing.tRunner(0x14b6108, 0x2a9fc4) /usr/lib/go-1.23/src/testing/testing.go:1690 +0x124 fp=0x1476fe0 sp=0x1476f80 pc=0x155710 testing.(*T).Run.gowrap1() /usr/lib/go-1.23/src/testing/testing.go:1743 +0x30 fp=0x1476fec sp=0x1476fe0 pc=0x15672c runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1476fec sp=0x1476fec pc=0x97d24 created by testing.(*T).Run in goroutine 1 /usr/lib/go-1.23/src/testing/testing.go:1743 +0x3d4 goroutine 7 gp=0x1403568 m=nil [select]: runtime.gopark(0x2aa26c, 0x0, 0x9, 0x3, 0x1) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x14466cc sp=0x14466b8 pc=0x907fc runtime.selectgo(0x14467d4, 0x14467ac, 0x0, 0x0, 0x2, 0x1) /usr/lib/go-1.23/src/runtime/select.go:335 +0xb68 fp=0x1446778 sp=0x14466cc pc=0x68948 gopkg.in/check%2ev1.(*resultTracker)._loopRoutine(0x14800a0) /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:470 +0x80 fp=0x14467e4 sp=0x1446778 pc=0x235f10 gopkg.in/check%2ev1.(*resultTracker).start.gowrap1() /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x28 fp=0x14467ec sp=0x14467e4 pc=0x235e64 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x14467ec sp=0x14467ec pc=0x97d24 created by gopkg.in/check%2ev1.(*resultTracker).start in goroutine 6 /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x58 goroutine 10 gp=0x14037a8 m=nil [GC worker (idle)]: runtime.gopark(0x2aa0f4, 0x1414468, 0x1a, 0xa, 0x0) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1441f88 sp=0x1441f74 pc=0x907fc runtime.gcBgMarkWorker(0x1418800) /usr/lib/go-1.23/src/runtime/mgc.go:1412 +0xf4 fp=0x1441fe4 sp=0x1441f88 pc=0x2c984 runtime.gcBgMarkStartWorkers.gowrap1() /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x28 fp=0x1441fec sp=0x1441fe4 pc=0x2c864 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1441fec sp=0x1441fec pc=0x97d24 created by runtime.gcBgMarkStartWorkers in goroutine 9 /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x14c goroutine 11 gp=0x14038c8 m=nil [GC worker (idle)]: runtime.gopark(0x2aa0f4, 0x1414480, 0x1a, 0xa, 0x0) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1441788 sp=0x1441774 pc=0x907fc runtime.gcBgMarkWorker(0x1418800) /usr/lib/go-1.23/src/runtime/mgc.go:1412 +0xf4 fp=0x14417e4 sp=0x1441788 pc=0x2c984 runtime.gcBgMarkStartWorkers.gowrap1() /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x28 fp=0x14417ec sp=0x14417e4 pc=0x2c864 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x14417ec sp=0x14417ec pc=0x97d24 created by runtime.gcBgMarkStartWorkers in goroutine 9 /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x14c goroutine 12 gp=0x14039e8 m=nil [GC worker (idle)]: runtime.gopark(0x2aa0f4, 0x1414498, 0x1a, 0xa, 0x0) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1442788 sp=0x1442774 pc=0x907fc runtime.gcBgMarkWorker(0x1418800) /usr/lib/go-1.23/src/runtime/mgc.go:1412 +0xf4 fp=0x14427e4 sp=0x1442788 pc=0x2c984 runtime.gcBgMarkStartWorkers.gowrap1() /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x28 fp=0x14427ec sp=0x14427e4 pc=0x2c864 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x14427ec sp=0x14427ec pc=0x97d24 created by runtime.gcBgMarkStartWorkers in goroutine 9 /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x14c goroutine 13 gp=0x1403b08 m=nil [GC worker (idle)]: runtime.gopark(0x2aa0f4, 0x14144b0, 0x1a, 0xa, 0x0) /usr/lib/go-1.23/src/runtime/proc.go:424 +0x104 fp=0x1442f88 sp=0x1442f74 pc=0x907fc runtime.gcBgMarkWorker(0x1418800) /usr/lib/go-1.23/src/runtime/mgc.go:1412 +0xf4 fp=0x1442fe4 sp=0x1442f88 pc=0x2c984 runtime.gcBgMarkStartWorkers.gowrap1() /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x28 fp=0x1442fec sp=0x1442fe4 pc=0x2c864 runtime.goexit({}) /usr/lib/go-1.23/src/runtime/asm_arm.s:884 +0x4 fp=0x1442fec sp=0x1442fec pc=0x97d24 created by runtime.gcBgMarkStartWorkers in goroutine 9 /usr/lib/go-1.23/src/runtime/mgc.go:1328 +0x14c FAIL github.com/biogo/biogo/index/kmerindex 34.163s === RUN Test OK: 2 passed --- PASS: Test (0.02s) PASS ok github.com/biogo/biogo/io/featio 0.091s === RUN Test OK: 4 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/io/featio/bed 0.057s === RUN Test OK: 5 passed --- PASS: Test (0.06s) PASS ok github.com/biogo/biogo/io/featio/gff 0.100s === RUN TestSeqio --- PASS: TestSeqio (0.00s) === RUN Test OK: 3 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/io/seqio 0.075s === RUN Test OK: 2 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/io/seqio/alignio 0.092s === RUN Test OK: 2 passed --- PASS: Test (0.03s) === RUN ExampleReader --- PASS: ExampleReader (0.00s) PASS ok github.com/biogo/biogo/io/seqio/fasta 0.052s === RUN Test OK: 2 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/io/seqio/fastq 0.066s === RUN Test OK: 7 passed --- PASS: Test (17.40s) PASS ok github.com/biogo/biogo/morass 17.472s === RUN TestSeq --- PASS: TestSeq (0.00s) PASS ok github.com/biogo/biogo/seq 0.072s === RUN Test OK: 1 passed --- PASS: Test (0.01s) === RUN ExampleNewSeq --- PASS: ExampleNewSeq (0.00s) === RUN ExampleSeq_Add --- PASS: ExampleSeq_Add (0.00s) === RUN ExampleSeq_Clone --- PASS: ExampleSeq_Clone (0.00s) === RUN ExampleSeq_Rows --- PASS: ExampleSeq_Rows (0.00s) === RUN ExampleSeq_join --- PASS: ExampleSeq_join (0.00s) === RUN ExampleSeq_Len --- PASS: ExampleSeq_Len (0.00s) === RUN ExampleSeq_RevComp --- PASS: ExampleSeq_RevComp (0.00s) === RUN ExampleSeq_stitch --- PASS: ExampleSeq_stitch (0.00s) === RUN ExampleSeq_truncate --- PASS: ExampleSeq_truncate (0.00s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Add --- PASS: ExampleQSeq_Add (0.00s) === RUN ExampleQSeq_Clone --- PASS: ExampleQSeq_Clone (0.00s) === RUN ExampleQSeq_Rows --- PASS: ExampleQSeq_Rows (0.00s) === RUN ExampleQSeq_join --- PASS: ExampleQSeq_join (0.00s) === RUN ExampleQSeq_Len --- PASS: ExampleQSeq_Len (0.00s) === RUN ExampleQSeq_RevComp --- PASS: ExampleQSeq_RevComp (0.00s) === RUN ExampleQSeq_stitch --- PASS: ExampleQSeq_stitch (0.00s) === RUN ExampleQSeq_truncate --- PASS: ExampleQSeq_truncate (0.00s) PASS ok github.com/biogo/biogo/seq/alignment 0.057s === RUN Test OK: 1 passed --- PASS: Test (0.02s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Validate --- PASS: ExampleQSeq_Validate (0.00s) === RUN ExampleQSeq_AppendQLetters --- PASS: ExampleQSeq_AppendQLetters (0.00s) === RUN ExampleNewSeq --- PASS: ExampleNewSeq (0.00s) === RUN ExampleSeq_Validate --- PASS: ExampleSeq_Validate (0.00s) === RUN ExampleSeq_truncate_a --- PASS: ExampleSeq_truncate_a (0.00s) === RUN ExampleSeq_truncate_b --- PASS: ExampleSeq_truncate_b (0.00s) === RUN ExampleSeq_RevComp --- PASS: ExampleSeq_RevComp (0.00s) === RUN ExampleSeq_join --- PASS: ExampleSeq_join (0.00s) === RUN ExampleSeq_stitch --- PASS: ExampleSeq_stitch (0.00s) === RUN ExampleSeq_compose --- PASS: ExampleSeq_compose (0.00s) PASS ok github.com/biogo/biogo/seq/linear 0.099s === RUN Test OK: 1 passed --- PASS: Test (0.01s) === RUN ExampleNewMulti --- PASS: ExampleNewMulti (0.00s) === RUN ExampleMulti_Add --- PASS: ExampleMulti_Add (0.00s) === RUN ExampleMulti_Clone --- PASS: ExampleMulti_Clone (0.00s) === RUN ExampleMulti_Rows --- PASS: ExampleMulti_Rows (0.00s) === RUN ExampleMulti_IsFlush --- PASS: ExampleMulti_IsFlush (0.00s) === RUN ExampleMulti_Join --- PASS: ExampleMulti_Join (0.00s) === RUN ExampleMulti_Len --- PASS: ExampleMulti_Len (0.00s) === RUN ExampleMulti_RevComp --- PASS: ExampleMulti_RevComp (0.00s) === RUN ExampleMulti_Stitch --- PASS: ExampleMulti_Stitch (0.00s) === RUN ExampleMulti_Truncate --- PASS: ExampleMulti_Truncate (0.00s) === RUN ExampleSet_AppendEach --- PASS: ExampleSet_AppendEach (0.00s) === RUN ExampleSet_Rows --- PASS: ExampleSet_Rows (0.00s) === RUN ExampleSet_Row --- PASS: ExampleSet_Row (0.00s) === RUN ExampleSet_Len --- PASS: ExampleSet_Len (0.00s) PASS ok github.com/biogo/biogo/seq/multi 0.068s === RUN Test OK: 1 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/biogo/seq/quality 0.064s === RUN Test OK: 4 passed --- PASS: Test (0.03s) === RUN ExampleTruncate_a --- PASS: ExampleTruncate_a (0.00s) === RUN ExampleTruncate_b --- PASS: ExampleTruncate_b (0.00s) === RUN ExampleJoin --- PASS: ExampleJoin (0.00s) === RUN ExampleStitch --- PASS: ExampleStitch (0.00s) PASS ok github.com/biogo/biogo/seq/sequtils 0.074s === RUN Test OK: 11 passed --- PASS: Test (0.09s) PASS ok github.com/biogo/biogo/util 0.151s FAIL dh_auto_test: error: cd _build && go test -vet=off -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: user script /srv/workspace/pbuilder/15879/tmp/hooks/C01_cleanup starting debug output: disk usage on i-capture-the-hostname at Thu Jan 9 10:17:39 UTC 2025 Filesystem Size Used Avail Use% Mounted on tmpfs 7.7G 0 7.7G 0% /dev/shm I: user script /srv/workspace/pbuilder/15879/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15879 and its subdirectories