I: pbuilder: network access will be disabled during build
I: Current time: Fri Jan 10 04:43:15 +14 2025
I: pbuilder-time-stamp: 1736433795
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [lambda-align_1.0.3-6.dsc]
I: copying [./lambda-align_1.0.3.orig.tar.gz]
I: copying [./lambda-align_1.0.3-6.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-6.dsc: unsupported subcommand
dpkg-source: info: extracting lambda-align in lambda-align-1.0.3
dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz
dpkg-source: info: unpacking lambda-align_1.0.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set-seqan-cmake-dir.patch
dpkg-source: info: applying force-link-rt-pthread.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/D01_modify_environment starting
debug: Running on virt64b.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jan 9 14:43 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=f1adbbacbd694294a09ccd50a4f3cef1
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=19520
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XCepPDbI/pbuilderrc_Lmxy --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XCepPDbI/b2 --logfile b2/build.log lambda-align_1.0.3-6.dsc'
SUDO_GID=113
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:3142/
I: uname -a
Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19561 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on libseqan2-dev; however:
Package libseqan2-dev is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on openssl; however:
Package openssl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget
0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded.
Need to get 36.6 MB of archives. After unpacking 140 MB will be used.
Writing extended state information...
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Get: 2 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-4 [196 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-14 [84.4 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 12 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-5 [272 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-4 [723 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.31.3-1 [2268 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB]
Get: 22 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 27 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB]
Get: 30 http://deb.debian.org/debian unstable/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB]
Get: 31 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.6-1 [20.0 kB]
Get: 32 http://deb.debian.org/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB]
Get: 33 http://deb.debian.org/debian unstable/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB]
Get: 34 http://deb.debian.org/debian unstable/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB]
Get: 35 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 36 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 37 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 42 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.1-1 [303 kB]
Get: 43 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB]
Get: 44 http://deb.debian.org/debian unstable/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB]
Get: 45 http://deb.debian.org/debian unstable/main armhf librhash1 armhf 1.4.5-1 [143 kB]
Get: 46 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-7 [134 kB]
Get: 47 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.31.3-1 [5899 kB]
Get: 48 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.23 [90.6 kB]
Get: 49 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-2 [539 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 54 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-4 [1489 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 58 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 59 http://deb.debian.org/debian unstable/main armhf debhelper all 13.23 [919 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB]
Get: 61 http://deb.debian.org/debian unstable/main armhf libseqan2-dev all 2.4.0+dfsg-16 [1216 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.4.0-2 [1388 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
Fetched 36.6 MB in 1s (53.3 MB/s)
Preconfiguring packages ...
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(Reading database ... 19561 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_armhf.deb ...
Unpacking libproc2-0:armhf (2:4.0.4-6) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.4-6_armhf.deb ...
Unpacking procps (2:4.0.4-6) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:armhf.
Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ...
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Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../06-gettext-base_0.22.5-4_armhf.deb ...
Unpacking gettext-base (0.22.5-4) ...
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Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ...
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Unpacking groff-base (1.23.0-7) ...
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Selecting previously unselected package libpipeline1:armhf.
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Unpacking libpipeline1:armhf (1.5.8-1) ...
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Preparing to unpack .../12-m4_1.4.19-5_armhf.deb ...
Unpacking m4 (1.4.19-5) ...
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Unpacking libicu72:armhf (72.1-6) ...
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Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libarchive13t64:armhf.
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Unpacking libarchive13t64:armhf (3.7.4-1.1) ...
Selecting previously unselected package libbrotli1:armhf.
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Unpacking libbrotli1:armhf (1.1.0-2+b6) ...
Selecting previously unselected package libkrb5support0:armhf.
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Unpacking libkrb5support0:armhf (1.21.3-3) ...
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Unpacking libcom-err2:armhf (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:armhf.
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Unpacking libk5crypto3:armhf (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:armhf.
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Unpacking libkeyutils1:armhf (1.6.3-4) ...
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Unpacking libkrb5-3:armhf (1.21.3-3) ...
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Unpacking libunistring5:armhf (1.3-1) ...
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Unpacking libffi8:armhf (3.4.6-1) ...
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Unpacking libtasn1-6:armhf (4.19.0-3+b3) ...
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cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=4 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp
cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=4 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp
In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32:
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
323 | setDate(parser, __DATE__);
| ^~~~~~~~
In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34,
from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35,
from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31:
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
323 | setDate(parser, __DATE__);
| ^~~~~~~~
In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37:
/build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
121 | public std::unary_function<TSAValue, TSize>
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /usr/include/seqan/basic/debug_test_system.h:150,
from /usr/include/seqan/basic/basic_debug.h:52,
from /usr/include/seqan/basic.h:49,
from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
145 | public std::unary_function<TSAValue, TSize>
| ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34:
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
79 | public ::std::binary_function < TSav, TSav, bool >
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/seqan/blast.h:64,
from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25,
from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31:
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]':
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]'
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]'
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]'
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]':
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
173 | getcwd(cwd, 1000);
| ~~~~~~^~~~~~~~~~~
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]':
/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
173 | getcwd(cwd, 1000);
| ~~~~~~^~~~~~~~~~~
[ 75%] Linking CXX executable ../bin/lambda_indexer
cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'operator++.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'process.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:406:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:415:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:406:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:415:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:260:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:270:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function 'assign.constprop.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11,
inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967248' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_toText':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
[100%] Linking CXX executable ../bin/lambda
cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'process.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'process.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'process.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=4 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
[100%] Built target lambda_indexer
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:406:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_popIterators.isra':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:260:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:406:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967256' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function 'insertStream':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINSS_INS_9TagExact_EEES10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1K_ISW_SL_EENS13_ISY_S10_EEEEE_EEvRNS1J_INS1K_IT_S1H_EENS1K_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function 'allocate',
inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:0,
inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '4294967208' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEjEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7IndexSaIvEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEESL_NSS_INS_16HammingDistance_EEENSS_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingISY_S10_EE15LocalDataHolderI16GlobalDataHolderIS5_SL_NSS_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENSS_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SL_EENS1I_ISW_SL_EES14_EEE_EEvRNS1H_INS1I_IT_S1F_EENS1I_IT1_T2_EENS13_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In member function 'operator++',
inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:317:20:
/usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
470 | outRef->i2.i[skipped++] = 0;
| ^
/usr/include/seqan/basic/tuple_base.h: In member function 'process.isra':
/usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'i' of size 7
141 | typename StoredTupleValue_<TValue>::Type i[SIZE];
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=4 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
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make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend
make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build'
cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build'
cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build
make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build'
make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build'
make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
[ 50%] Built target lambda
[100%] Built target lambda_indexer
make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst
-- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst
make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3'
dh_install
find debian -name "LICENSE*.rst" -delete
make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3'
dh_installdocs -O--builddirectory=build
dh_installchangelogs -O--builddirectory=build
debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3'
./build/bin/lambda --export-help man \
| sed -r 's/(number of threads.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda.1
mkdir: cannot create directory '/nonexistent': Permission denied
./build/bin/lambda_indexer --export-help man \
| sed -r 's/(number of threads.*) Default:.*/\1/g' \
| sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda_indexer.1
mkdir: cannot create directory '/nonexistent': Permission denied
dh_installman --
make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3'
dh_installinit -O--builddirectory=build
dh_installsystemduser -O--builddirectory=build
dh_perl -O--builddirectory=build
dh_link -O--builddirectory=build
dh_strip_nondeterminism -O--builddirectory=build
dh_compress -O--builddirectory=build
dh_fixperms -O--builddirectory=build
dh_missing -O--builddirectory=build
dh_dwz -O--builddirectory=build
dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present
dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -O--builddirectory=build
dh_makeshlibs -O--builddirectory=build
dh_shlibdeps -O--builddirectory=build
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: debian/lambda-align/usr/bin/lambda_indexer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/lambda-align/usr/bin/lambda contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dh_installdeb -O--builddirectory=build
dh_gencontrol -O--builddirectory=build
dh_md5sums -O--builddirectory=build
dh_builddeb -O--builddirectory=build
dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-6_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-6_armhf.buildinfo
dpkg-genchanges --build=binary -O../lambda-align_1.0.3-6_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/19520/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/19520 and its subdirectories
I: Current time: Fri Jan 10 04:54:28 +14 2025
I: pbuilder-time-stamp: 1736434468