I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 17 01:54:14 +14 2025 I: pbuilder-time-stamp: 1737028454 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-gff-perl_1.7.4-1.dsc] I: copying [./libbio-db-gff-perl_1.7.4.orig.tar.gz] I: copying [./libbio-db-gff-perl_1.7.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-db-gff-perl_1.7.4-1.dsc: unsupported subcommand dpkg-source: info: extracting libbio-db-gff-perl in libbio-db-gff-perl-1.7.4 dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11940/tmp/hooks/D01_modify_environment starting debug: Running on virt64z. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 16 11:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/11940/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/11940/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=17963e768f604773ae77c3227d5c3dba LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=11940 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Y6CZ81sl/pbuilderrc_0O2C --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Y6CZ81sl/b2 --logfile b2/build.log libbio-db-gff-perl_1.7.4-1.dsc' SUDO_GID=110 SUDO_UID=103 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11940/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19563 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libapache-dbi-perl; however: Package libapache-dbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-biofetch-perl; however: Package libbio-db-biofetch-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however: Package libcgi-pm-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libffi8{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtasn1-6{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After unpacking 112 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.4.0-2 [1388 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20241223 [164 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.4-1 [84.6 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libapr1t64 armhf 1.7.5-1 [86.6 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libaprutil1t64 armhf 1.6.3-3 [78.3 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libaprutil1-dbd-sqlite3 armhf 1.6.3-3 [12.5 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libaprutil1-ldap armhf 1.6.3-3 [11.5 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 33 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.1-1 [303 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf liblua5.4-0 armhf 5.4.7-1+b2 [123 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf apache2-bin armhf 2.4.62-3 [1219 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.1-1 [770 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.23 [90.6 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-2 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 55 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf debhelper all 13.23 [919 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.30-1 [105 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libfile-listing-perl all 6.16-1 [12.4 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libhtml-parser-perl armhf 3.83-1+b2 [96.5 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.47-1+b1 [13.3 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 7.00-2 [79.8 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf perl-openssl-defaults armhf 7+b2 [6708 B] Get: 78 http://deb.debian.org/debian unstable/main armhf libnet-ssleay-perl armhf 1.94-2 [319 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libnet-http-perl all 6.23-1 [23.9 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libwww-perl all 6.77-1 [183 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libapache2-mod-perl2 armhf 2.0.13-2+b1 [780 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libdbi-perl armhf 1.645-1+b1 [854 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libapache-dbi-perl all 1.12-3 [48.5 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libio-string-perl all 1.08-4 [12.1 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libdata-stag-perl all 0.14-3 [448 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libcgi-pm-perl all 4.67-1 [217 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 95 http://deb.debian.org/debian unstable/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libexception-class-perl all 1.45-1 [34.6 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libmodule-build-perl all 0.423400-2 [252 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libtest-deep-perl all 1.204-1 [52.9 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libtext-diff-perl all 1.45-2 [27.2 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libtest-differences-perl all 0.71-1 [17.9 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libtest-exception-perl all 0.43-3 [16.9 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libtest-warn-perl all 0.37-2 [14.5 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libtest-most-perl all 0.38-1 [25.1 kB] Fetched 33.6 MB in 4s (8632 kB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19563 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.4.0-2_armhf.deb ... Unpacking openssl (3.4.0-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. 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Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../055-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../056-gettext_0.23.1-1_armhf.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../057-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../058-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../059-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../060-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../061-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../062-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../063-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../064-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../065-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../066-libfile-listing-perl_6.16-1_all.deb ... 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Preparing to unpack .../072-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../073-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../074-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../075-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:armhf. Preparing to unpack .../076-perl-openssl-defaults_7+b2_armhf.deb ... Unpacking perl-openssl-defaults:armhf (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:armhf. Preparing to unpack .../077-libnet-ssleay-perl_1.94-2_armhf.deb ... Unpacking libnet-ssleay-perl:armhf (1.94-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../078-libio-socket-ssl-perl_2.089-1_all.deb ... Unpacking libio-socket-ssl-perl (2.089-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../079-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../080-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../081-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../082-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../083-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../084-libapache2-mod-perl2_2.0.13-2+b1_armhf.deb ... Unpacking libapache2-mod-perl2 (2.0.13-2+b1) ... Selecting previously unselected package libdbi-perl:armhf. Preparing to unpack .../085-libdbi-perl_1.645-1+b1_armhf.deb ... Unpacking libdbi-perl:armhf (1.645-1+b1) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../086-libapache-dbi-perl_1.12-3_all.deb ... Unpacking libapache-dbi-perl (1.12-3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../087-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../088-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../089-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libbio-db-biofetch-perl. Preparing to unpack .../090-libbio-db-biofetch-perl_1.7.3-4_all.deb ... Unpacking libbio-db-biofetch-perl (1.7.3-4) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../091-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../092-libcgi-pm-perl_4.67-1_all.deb ... Unpacking libcgi-pm-perl (4.67-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../093-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../094-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../095-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../096-libmodule-build-perl_0.423400-2_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../097-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../098-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../099-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../100-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../101-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../102-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../103-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:armhf (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up perl-openssl-defaults:armhf (7+b2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:armhf (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:armhf (1.3-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libffi8:armhf (3.4.6-1) ... Setting up dwz (0.15-1+b2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libapr1t64:armhf (1.7.5-1) ... Setting up libtasn1-6:armhf (4.19.0-3+b3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up liblua5.4-0:armhf (5.4.7-1+b2) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up openssl (3.4.0-2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:armhf (1.645-1+b1) ... Setting up libnet-ssleay-perl:armhf (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libaprutil1t64:armhf (1.6.3-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libidn2-0:armhf (2.3.7-2+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libaprutil1-dbd-sqlite3:armhf (1.6.3-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:armhf (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libgnutls30t64:armhf (3.8.8-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.67-1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libldap-2.5-0:armhf (2.5.19+dfsg-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:armhf (8.11.1-1) ... Setting up debhelper (13.23) ... Setting up libaprutil1-ldap:armhf (1.6.3-3) ... Setting up apache2-bin (2.4.62-3) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libapache2-mod-perl2 (2.0.13-2+b1) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libapache-dbi-perl (1.12-3) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.36.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/11940/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/11940/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-db-gff-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-gff-perl_1.7.4-1_source.changes dpkg-buildpackage: info: source package libbio-db-gff-perl dpkg-buildpackage: info: source version 1.7.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::GFF Writing MYMETA.yml and MYMETA.json dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm cp lib/Bio/DB/GFF/Aggregator/orf.pm blib/lib/Bio/DB/GFF/Aggregator/orf.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm cp lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm cp lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm cp lib/Bio/DB/GFF/Aggregator.pm blib/lib/Bio/DB/GFF/Aggregator.pm cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm cp lib/Bio/DB/GFF/Aggregator/so_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm cp lib/Bio/DB/GFF/Aggregator/coding.pm blib/lib/Bio/DB/GFF/Aggregator/coding.pm cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm cp lib/Bio/DB/GFF/Typename.pm blib/lib/Bio/DB/GFF/Typename.pm cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm cp lib/Bio/DB/GFF/Homol.pm blib/lib/Bio/DB/GFF/Homol.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm cp bin/bp_bulk_load_gff blib/script/bp_bulk_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bulk_load_gff cp bin/bp_das_server blib/script/bp_das_server cp bin/bp_fast_load_gff blib/script/bp_fast_load_gff cp bin/bp_genbank2gff blib/script/bp_genbank2gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_das_server "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fast_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff cp bin/bp_generate_histogram blib/script/bp_generate_histogram cp bin/bp_load_gff blib/script/bp_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_generate_histogram "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff cp bin/bp_meta_gff blib/script/bp_meta_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_meta_gff Manifying 6 pod documents Manifying 27 pod documents Manifying 16 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..50 ok 1 - Bio/DB/GFF.pm loaded ok ok 2 - Bio/DB/GFF/Adaptor/berkeleydb.pm loaded ok ok 3 - Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm loaded ok ok 4 - Bio/DB/GFF/Adaptor/biofetch.pm loaded ok ok 5 - Bio/DB/GFF/Adaptor/biofetch_oracle.pm loaded ok ok 6 - Bio/DB/GFF/Adaptor/dbi.pm loaded ok ok 7 - Bio/DB/GFF/Adaptor/dbi/caching_handle.pm loaded ok ok 8 - Bio/DB/GFF/Adaptor/dbi/iterator.pm loaded ok ok 9 - Bio/DB/GFF/Adaptor/dbi/mysql.pm loaded ok ok 10 - Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm loaded ok ok 11 - Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm loaded ok ok 12 - Bio/DB/GFF/Adaptor/dbi/oracle.pm loaded ok ok 13 - Bio/DB/GFF/Adaptor/dbi/pg.pm loaded ok ok 14 - Bio/DB/GFF/Adaptor/dbi/pg_fts.pm loaded ok ok 15 - Bio/DB/GFF/Adaptor/memory.pm loaded ok ok 16 - Bio/DB/GFF/Adaptor/memory/feature_serializer.pm loaded ok ok 17 - Bio/DB/GFF/Adaptor/memory/iterator.pm loaded ok ok 18 - Bio/DB/GFF/Aggregator.pm loaded ok ok 19 - Bio/DB/GFF/Aggregator/alignment.pm loaded ok ok 20 - Bio/DB/GFF/Aggregator/clone.pm loaded ok ok 21 - Bio/DB/GFF/Aggregator/coding.pm loaded ok ok 22 - Bio/DB/GFF/Aggregator/gene.pm loaded ok ok 23 - Bio/DB/GFF/Aggregator/match.pm loaded ok ok 24 - Bio/DB/GFF/Aggregator/none.pm loaded ok ok 25 - Bio/DB/GFF/Aggregator/orf.pm loaded ok ok 26 - Bio/DB/GFF/Aggregator/processed_transcript.pm loaded ok ok 27 - Bio/DB/GFF/Aggregator/so_transcript.pm loaded ok ok 28 - Bio/DB/GFF/Aggregator/transcript.pm loaded ok ok 29 - Bio/DB/GFF/Aggregator/ucsc_acembly.pm loaded ok ok 30 - Bio/DB/GFF/Aggregator/ucsc_ensgene.pm loaded ok ok 31 - Bio/DB/GFF/Aggregator/ucsc_genscan.pm loaded ok ok 32 - Bio/DB/GFF/Aggregator/ucsc_refgene.pm loaded ok ok 33 - Bio/DB/GFF/Aggregator/ucsc_sanger22.pm loaded ok ok 34 - Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm loaded ok ok 35 - Bio/DB/GFF/Aggregator/ucsc_softberry.pm loaded ok ok 36 - Bio/DB/GFF/Aggregator/ucsc_twinscan.pm loaded ok ok 37 - Bio/DB/GFF/Aggregator/ucsc_unigene.pm loaded ok ok 38 - Bio/DB/GFF/Featname.pm loaded ok ok 39 - Bio/DB/GFF/Feature.pm loaded ok ok 40 - Bio/DB/GFF/Homol.pm loaded ok ok 41 - Bio/DB/GFF/RelSegment.pm loaded ok ok 42 - Bio/DB/GFF/Segment.pm loaded ok ok 43 - Bio/DB/GFF/Typename.pm loaded ok ok 44 - bin/bp_bulk_load_gff compiled ok ok 45 - bin/bp_das_server compiled ok ok 46 - bin/bp_fast_load_gff compiled ok ok 47 - bin/bp_genbank2gff compiled ok ok 48 - bin/bp_generate_histogram compiled ok ok 49 - bin/bp_load_gff compiled ok ok 50 - bin/bp_meta_gff compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author You are loading a Bio::DB::GFF database with GFF3 formatted data. While this will likely work fine, the Bio::DB::GFF schema does not always faithfully capture the complexity represented in GFF3 files. Unless you have a specific reason for using Bio::DB::GFF, we suggest that you use a Bio::DB::SeqFeature::Store database and its corresponding loader, bp_seqfeature_load.pl. t/BioDBGFF.t ........... 1..275 ok 1 - use Bio::DB::GFF; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 # skip fetch_feature_by_gid() not implemented by this adaptor ok 102 # skip fetch_feature_by_gid() not implemented by this adaptor ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 # skip delete_groups() not implemented by this adaptor ok 133 # skip delete_groups() not implemented by this adaptor ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 # skip fetch_feature_by_gid() not implemented by this adaptor ok 239 # skip fetch_feature_by_gid() not implemented by this adaptor ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 # skip preferred groups are not supported by gff3 ok 247 # skip preferred groups are not supported by gff3 ok 248 # skip preferred groups are not supported by gff3 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok 269 # skip delete_groups() not implemented by this adaptor ok 270 # skip delete_groups() not implemented by this adaptor ok 271 ok 272 ok 273 ok 274 ok 275 ok All tests successful. Files=4, Tests=325, 10 wallclock secs ( 0.08 usr 0.02 sys + 9.40 cusr 1.16 csys = 10.66 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-gff-perl/ make -j4 install DESTDIR=/build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' Manifying 6 pod documents Manifying 27 pod documents Manifying 16 pod documents Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Feature.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Homol.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Featname.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch_oracle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/oracle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_acembly.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/so_transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/match.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/coding.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_unigene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/orf.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_fast_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_generate_histogram.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_bulk_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_meta_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_genbank2gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::none.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::RelSegment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::orf.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Homol.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::gene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Feature.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Featname.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::clone.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::alignment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::match.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::coding.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Typename.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Segment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_das_server Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_generate_histogram Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_fast_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_genbank2gff make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-gff-perl' in '../libbio-db-gff-perl_1.7.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-gff-perl_1.7.4-1_armhf.buildinfo dpkg-genchanges --build=binary -O../libbio-db-gff-perl_1.7.4-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/11940/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/11940/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11940 and its subdirectories I: Current time: Fri Jan 17 01:55:46 +14 2025 I: pbuilder-time-stamp: 1737028546