I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 19:47:55 -12 2024 I: pbuilder-time-stamp: 1732348075 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mummer_3.23+dfsg-8.dsc] I: copying [./mummer_3.23+dfsg.orig.tar.xz] I: copying [./mummer_3.23+dfsg-8.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 4 11:37:19 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting mummer in mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20891/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='53faf610aec7479ba8db84807becd759' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20891' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nSgqtTLu/pbuilderrc_Bebu --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nSgqtTLu/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20891/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu72{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 76.2 MB of archives. After unpacking 245 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b2 [25.0 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.2-3 [1326 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.0.1-1 [418 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.1.1-1 [58.5 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libkpathsea6 armhf 2024.20240313.70630+ds-5 [147 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libmpfi0 armhf 1.5.4+ds-4 [28.8 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29+b2 [12.2 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29+b2 [8700 B] Get: 60 http://deb.debian.org/debian unstable/main armhf libpotrace0 armhf 1.16-2+b2 [22.7 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libptexenc1 armhf 2024.20240313.70630+ds-5 [44.4 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.4-1 [33.5 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libsynctex2 armhf 2024.20240313.70630+ds-5 [49.2 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libteckit0 armhf 2.5.12+ds1-1+b1 [259 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libtexlua53-5 armhf 2024.20240313.70630+ds-5 [83.4 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2+b1 [160 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libxmu6 armhf 2:1.1.3-3+b3 [51.2 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libxpm4 armhf 1:3.5.17-1+b2 [50.4 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libxaw7 armhf 2:1.0.16-1 [177 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.2-1 [73.6 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.3 [53.1 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf tex-common all 6.18 [32.5 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf texlive-binaries armhf 2024.20240313.70630+ds-5 [6041 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf texlive-base all 2024.20241115-1 [22.7 MB] Get: 77 http://deb.debian.org/debian unstable/main armhf texlive-fonts-recommended all 2024.20241115-1 [4991 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf texlive-latex-base all 2024.20241115-1 [1278 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf texlive-latex-recommended all 2024.20241115-1 [8757 kB] Fetched 76.2 MB in 9s (8218 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../10-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../30-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../31-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../32-fontconfig-config_2.15.0-1.1+b1_armhf.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../33-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../34-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../35-libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../36-libpng16-16t64_1.6.44-2_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.44-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../37-libfreetype6_2.13.3+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../38-libfontconfig1_2.15.0-1.1+b1_armhf.deb ... 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Unpacking libx11-6:armhf (2:1.8.10-2) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../45-libxcb-render0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-render0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../46-libxcb-shm0_1.17.0-2+b1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.17.0-2+b1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../47-libxext6_2%3a1.3.4-1+b2_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../48-libxrender1_1%3a0.9.10-1.1+b2_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1+b2) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../49-libcairo2_1.18.2-2_armhf.deb ... Unpacking libcairo2:armhf (1.18.2-2) ... Selecting previously unselected package libglib2.0-0t64:armhf. 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Selecting previously unselected package libmpfi0:armhf. Preparing to unpack .../56-libmpfi0_1.5.4+ds-4_armhf.deb ... Unpacking libmpfi0:armhf (1.5.4+ds-4) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../57-libpaper1_1.1.29+b2_armhf.deb ... Unpacking libpaper1:armhf (1.1.29+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../58-libpaper-utils_1.1.29+b2_armhf.deb ... Unpacking libpaper-utils (1.1.29+b2) ... Selecting previously unselected package libpotrace0:armhf. Preparing to unpack .../59-libpotrace0_1.16-2+b2_armhf.deb ... Unpacking libpotrace0:armhf (1.16-2+b2) ... Selecting previously unselected package libptexenc1:armhf. Preparing to unpack .../60-libptexenc1_2024.20240313.70630+ds-5_armhf.deb ... Unpacking libptexenc1:armhf (2024.20240313.70630+ds-5) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../61-libsm6_2%3a1.2.4-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.4-1) ... Selecting previously unselected package libsynctex2:armhf. Preparing to unpack .../62-libsynctex2_2024.20240313.70630+ds-5_armhf.deb ... Unpacking libsynctex2:armhf (2024.20240313.70630+ds-5) ... Selecting previously unselected package libteckit0:armhf. Preparing to unpack .../63-libteckit0_2.5.12+ds1-1+b1_armhf.deb ... Unpacking libteckit0:armhf (2.5.12+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:armhf. Preparing to unpack .../64-libtexlua53-5_2024.20240313.70630+ds-5_armhf.deb ... Unpacking libtexlua53-5:armhf (2024.20240313.70630+ds-5) ... Selecting previously unselected package libxt6t64:armhf. Preparing to unpack .../65-libxt6t64_1%3a1.2.1-1.2+b1_armhf.deb ... Unpacking libxt6t64:armhf (1:1.2.1-1.2+b1) ... Selecting previously unselected package libxmu6:armhf. Preparing to unpack .../66-libxmu6_2%3a1.1.3-3+b3_armhf.deb ... Unpacking libxmu6:armhf (2:1.1.3-3+b3) ... Selecting previously unselected package libxpm4:armhf. 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Preparing to unpack .../73-texlive-binaries_2024.20240313.70630+ds-5_armhf.deb ... Unpacking texlive-binaries (2024.20240313.70630+ds-5) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../74-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../75-texlive-base_2024.20241115-1_all.deb ... Unpacking texlive-base (2024.20241115-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../76-texlive-fonts-recommended_2024.20241115-1_all.deb ... Unpacking texlive-fonts-recommended (2024.20241115-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../77-texlive-latex-base_2024.20241115-1_all.deb ... Unpacking texlive-latex-base (2024.20241115-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../78-texlive-latex-recommended_2024.20241115-1_all.deb ... Unpacking texlive-latex-recommended (2024.20241115-1) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libgraphite2-3:armhf (1.3.14-2+b1) ... Setting up libpixman-1-0:armhf (0.44.0-3) ... Setting up libxau6:armhf (1:1.0.11-1) ... Setting up libxdmcp6:armhf (1:1.1.5-1) ... Setting up libxcb1:armhf (1.17.0-2+b1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:armhf (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:armhf (1.17.0-2+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.82.2-3) ... No schema files found: doing nothing. Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.3) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libteckit0:armhf (2.5.12+ds1-1+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:armhf (2024.20240313.70630+ds-5) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up libmpfi0:armhf (1.5.4+ds-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libkpathsea6:armhf (2024.20240313.70630+ds-5) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:armhf (2024.20240313.70630+ds-5) ... Setting up libpotrace0:armhf (1.16-2+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:armhf (2:1.1.1-1) ... Setting up gettext (0.22.5-2) ... Setting up libxpm4:armhf (1:3.5.17-1+b2) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libptexenc1:armhf (2024.20240313.70630+ds-5) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:armhf (10.0.1-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ... Setting up libsm6:armhf (2:1.2.4-1) ... Setting up libpaper1:armhf (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up libxi6:armhf (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.2-2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:armhf (1:1.2.1-1.2+b1) ... Setting up libxmu6:armhf (2:1.1.3-3+b3) ... Setting up debhelper (13.20) ... Setting up libxaw7:armhf (2:1.0.16-1) ... Setting up texlive-binaries (2024.20240313.70630+ds-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2024.20241115-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2024.20241115-1) ... Setting up texlive-latex-recommended (2024.20241115-1) ... Setting up texlive-fonts-recommended (2024.20241115-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j3 "INSTALL=install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME' 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2024-11-01> L3 programming layer <2024-11-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/06/29 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 134082 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2024-11-01> L3 programming layer <2024-11-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/06/29 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 133416 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test make -j3 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' mv /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 57550 new size 58497 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta-filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2blocks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2maf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-tiling contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_armhf.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_armhf.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_armhf.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20891 and its subdirectories I: Current time: Fri Nov 22 20:11:52 -12 2024 I: pbuilder-time-stamp: 1732349512