I: pbuilder: network access will be disabled during build
I: Current time: Sat Oct 12 14:18:23 -12 2024
I: pbuilder-time-stamp: 1728785903
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [ncbi-seg_0.0.20000620-7.dsc]
I: copying [./ncbi-seg_0.0.20000620.orig.tar.gz]
I: copying [./ncbi-seg_0.0.20000620-7.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Sep 1 18:32:50 2024
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./ncbi-seg_0.0.20000620-7.dsc: no acceptable signature found
dpkg-source: info: extracting ncbi-seg in ncbi-seg-0.0.20000620
dpkg-source: info: unpacking ncbi-seg_0.0.20000620.orig.tar.gz
dpkg-source: info: unpacking ncbi-seg_0.0.20000620-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile
dpkg-source: info: applying example
dpkg-source: info: applying seg.c
dpkg-source: info: applying genwin.c
dpkg-source: info: applying autotools
dpkg-source: info: applying seg.pod
dpkg-source: info: applying clang.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/6649/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='f56fd7bd8ad64fd3b2c413e5881dd4dd'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='6649'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VqnIUNp6/pbuilderrc_PX91 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VqnIUNp6/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc'
SUDO_GID='110'
SUDO_UID='103'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt64z 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/6649/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19519 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.1 MB of archives. After unpacking 70.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 22 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB]
Fetched 19.1 MB in 0s (60.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19519 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-3) ...
Selecting previously unselected package libmagic1t64:armhf.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ...
Unpacking libmagic1t64:armhf (1:5.45-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ...
Unpacking file (1:5.45-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.22.5-2_armhf.deb ...
Unpacking gettext-base (0.22.5-2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.8-1+b1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-5_armhf.deb ...
Unpacking groff-base (1.23.0-5) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.2-9_armhf.deb ...
Unpacking bsdextrautils (2.40.2-9) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ...
Unpacking autopoint (0.22.5-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:armhf.
Preparing to unpack .../21-libelf1t64_0.191-2_armhf.deb ...
Unpacking libelf1t64:armhf (0.191-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ...
Unpacking dwz (0.15-1+b2) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../23-libicu72_72.1-5_armhf.deb ...
Unpacking libicu72:armhf (72.1-5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_armhf.deb ...
Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.22.5-2_armhf.deb ...
Unpacking gettext (0.22.5-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../28-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Setting up libpipeline1:armhf (1.5.8-1) ...
Setting up libicu72:armhf (72.1-5) ...
Setting up bsdextrautils (2.40.2-9) ...
Setting up libmagic-mgc (1:5.45-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libmagic1t64:armhf (1:5.45-3) ...
Setting up gettext-base (0.22.5-2) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-3) ...
Setting up libelf1t64:armhf (0.191-2) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.22.5-2) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:armhf (0.0.8-1+b1) ...
Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-2) ...
Setting up libtool (2.4.7-7) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-5) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.20) ...
Processing triggers for libc-bin (2.40-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes
dpkg-buildpackage: info: source package ncbi-seg
dpkg-buildpackage: info: source version 0.0.20000620-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
debian/rules override_dh_autoreconf
make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
dh_autoreconf -X./COPYING
configure.ac:5: installing './compile'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './INSTALL'
Makefile.am: installing './depcomp'
make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
dh_auto_configure
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
dh_auto_build
make -j3
make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o seg.o seg.c
gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o genwin.o genwin.c
sed -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/ncbi-seg|g;s|__pkgdatadir__|/usr/share/ncbi-seg|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|0.0.20000620|g;' "ncbi-seg.pod" | \
pod2man -c 'User Commands' -r "0.0.20000620" -name NCBI-SEG > "ncbi-seg.1"
In file included from seg.c:10:
genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int]
146 | extern closedbase();
| ^~~~~~~~~~
genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int]
149 | extern closeseq();
| ^~~~~~~~
In file included from genwin.c:9:
genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int]
146 | extern closedbase();
| ^~~~~~~~~~
genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int]
149 | extern closeseq();
| ^~~~~~~~
genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int]
152 | extern shiftwin(), closewin();
| ^~~~~~~~
genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int]
152 | extern shiftwin(), closewin();
| ^~~~~~~~
genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~~
genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~~~
genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int]
152 | extern shiftwin(), closewin();
| ^~~~~~~~
genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~
genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int]
158 | extern closemat();
| ^~~~~~~~
genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int]
152 | extern shiftwin(), closewin();
| ^~~~~~~~
genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~~
genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~
genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~~~
genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~
genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int]
154 | extern compon(), stateon(), enton();
| ^~~~~
genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int]
158 | extern closemat();
| ^~~~~~~~
genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~~~~
genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~
genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~
genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int]
160 | extern upper(), lower(), findchar();
| ^~~~~~~~
genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int]
62 | genwininit()
| ^~~~~~~~~~
genwin.c: In function 'opendbase':
genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration]
93 | if (blastdb(name))
| ^~~~~~~
genwin.c: At top level:
genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int]
144 | extern closedbase(dbase)
| ^~~~~~~~~~
genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int]
185 | extern closeseq(seq)
| ^~~~~~~~
genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int]
319 | extern closewin(win)
| ^~~~~~~~
genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int]
336 | extern compon(win)
| ^~~~~~
genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int]
364 | extern stateon(win)
| ^~~~~~~
genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int]
389 | extern enton(win)
| ^~~~~
genwin.c: In function 'readentry':
genwin.c:510:9: warning: implicit declaration of function 'readhdr' [-Wimplicit-function-declaration]
510 | if (!readhdr(seq))
| ^~~~~~~
genwin.c:528:4: warning: implicit declaration of function 'readseq' [-Wimplicit-function-declaration]
528 | readseq(seq);
| ^~~~~~~
genwin.c: At top level:
genwin.c:545:1: warning: return type defaults to 'int' [-Wimplicit-int]
545 | readhdr(seq)
| ^~~~~~~
genwin.c: In function 'readhdr':
genwin.c:670:10: warning: implicit declaration of function 'skipline' [-Wimplicit-function-declaration]
670 | skipline(fp);
| ^~~~~~~~
genwin.c: At top level:
genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int]
684 | skipline(fp)
| ^~~~~~~~
genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int]
718 | readseq(seq)
| ^~~~~~~
genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int]
794 | extern upper(string, len)
| ^~~~~
genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int]
807 | extern lower(string, len)
| ^~~~~
genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int]
862 | tfree(ptr)
| ^~~~~
seg.c:49:1: warning: return type defaults to 'int' [-Wimplicit-int]
49 | main(argc, argv)
| ^~~~
seg.c: In function 'main':
seg.c:58:4: warning: implicit declaration of function 'genwininit' [-Wimplicit-function-declaration]
58 | genwininit();
| ^~~~~~~~~~
seg.c:60:4: warning: implicit declaration of function 'getparams' [-Wimplicit-function-declaration]
60 | getparams(argc, argv);
| ^~~~~~~~~
seg.c:61:4: warning: implicit declaration of function 'entropy_init' [-Wimplicit-function-declaration]
61 | entropy_init(window);
| ^~~~~~~~~~~~
seg.c:72:7: warning: implicit declaration of function 'segseq' [-Wimplicit-function-declaration]
72 | segseq(seq, &segs, 0);
| ^~~~~~
seg.c:73:7: warning: implicit declaration of function 'mergesegs' [-Wimplicit-function-declaration]
73 | mergesegs(seq, segs);
| ^~~~~~~~~
seg.c:75:22: warning: implicit declaration of function 'singreport' [-Wimplicit-function-declaration]
75 | if (singleseq) singreport(seq, segs);
| ^~~~~~~~~~
seg.c:76:27: warning: implicit declaration of function 'prettyreport' [-Wimplicit-function-declaration]
76 | else if (prettyseq) prettyreport(seq, segs);
| ^~~~~~~~~~~~
seg.c:77:28: warning: implicit declaration of function 'pretreereport' [-Wimplicit-function-declaration]
77 | else if (prettytree) pretreereport(seq, segs);
| ^~~~~~~~~~~~~
seg.c:78:12: warning: implicit declaration of function 'report' [-Wimplicit-function-declaration]
78 | else report(seq, segs);
| ^~~~~~
seg.c:80:7: warning: implicit declaration of function 'freesegs' [-Wimplicit-function-declaration]
80 | freesegs(segs);
| ^~~~~~~~
seg.c: At top level:
seg.c:90:1: warning: return type defaults to 'int' [-Wimplicit-int]
90 | getparams(argc, argv)
| ^~~~~~~~~
seg.c: In function 'getparams':
seg.c:103:7: warning: implicit declaration of function 'usage' [-Wimplicit-function-declaration]
103 | usage();
| ^~~~~
seg.c:137:14: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration]
137 | while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1)
| ^~~~~~
| getsubopt
seg.c: At top level:
seg.c:210:1: warning: return type defaults to 'int' [-Wimplicit-int]
210 | segseq(seq, segs, offset)
| ^~~~~~
seg.c: In function 'segseq':
seg.c:233:16: warning: implicit declaration of function 'findlo' [-Wimplicit-function-declaration]
233 | loi = findlo(i, lowlim, H);
| ^~~~~~
seg.c:234:16: warning: implicit declaration of function 'findhi'; did you mean 'findchar'? [-Wimplicit-function-declaration]
234 | hii = findhi(i, last, H);
| ^~~~~~
| findchar
seg.c:239:10: warning: implicit declaration of function 'trim' [-Wimplicit-function-declaration]
239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend);
| ^~~~
seg.c:252:21: warning: implicit declaration of function 'appendseg' [-Wimplicit-function-declaration]
252 | else appendseg(*segs, leftsegs);
| ^~~~~~~~~
seg.c:273:14: warning: implicit declaration of function 'min'; did you mean 'main'? [-Wimplicit-function-declaration]
273 | i = min(hii, rightend+downset);
| ^~~
| main
seg.c: In function 'seqent':
seg.c:312:31: warning: implicit declaration of function 'hasdash' [-Wimplicit-function-declaration]
312 | if (seq->punctuation && hasdash(win))
| ^~~~~~~
seg.c:314:10: warning: implicit declaration of function 'shiftwin1'; did you mean 'shiftwin'? [-Wimplicit-function-declaration]
314 | shiftwin1(win);
| ^~~~~~~~~
| shiftwin
seg.c: At top level:
seg.c:326:1: warning: return type defaults to 'int' [-Wimplicit-int]
326 | hasdash(win)
| ^~~~~~~
seg.c:343:1: warning: return type defaults to 'int' [-Wimplicit-int]
343 | findlo(i, limit, H)
| ^~~~~~
seg.c:360:1: warning: return type defaults to 'int' [-Wimplicit-int]
360 | findhi(i, limit, H)
| ^~~~~~
seg.c:377:1: warning: return type defaults to 'int' [-Wimplicit-int]
377 | trim(seq, leftend, rightend)
| ^~~~
seg.c:507:1: warning: return type defaults to 'int' [-Wimplicit-int]
507 | mergesegs(seq, segs)
| ^~~~~~~~~
seg.c:553:1: warning: return type defaults to 'int' [-Wimplicit-int]
553 | report(seq, segs)
| ^~~~~~
seg.c: In function 'report':
seg.c:565:7: warning: implicit declaration of function 'seqout'; did you mean 'seqent'? [-Wimplicit-function-declaration]
565 | seqout(seq, hi, 1, seq->length);
| ^~~~~~
| seqent
seg.c: At top level:
seg.c:626:1: warning: return type defaults to 'int' [-Wimplicit-int]
626 | singreport(seq, segs)
| ^~~~~~~~~~
seg.c:663:1: warning: return type defaults to 'int' [-Wimplicit-int]
663 | prettyreport(seq, segs)
| ^~~~~~~~~~~~
seg.c: In function 'prettyreport':
seg.c:687:9: warning: implicit declaration of function 'space'; did you mean 'isspace'? [-Wimplicit-function-declaration]
687 | space(leftspace+1);
| ^~~~~
| isspace
seg.c: At top level:
seg.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int]
718 | pretreereport(seq, segs)
| ^~~~~~~~~~~~~
seg.c:811:1: warning: return type defaults to 'int' [-Wimplicit-int]
811 | space(len)
| ^~~~~
seg.c:832:1: warning: return type defaults to 'int' [-Wimplicit-int]
832 | seqout(seq, hilo, begin, end)
| ^~~~~~
seg.c:906:1: warning: return type defaults to 'int' [-Wimplicit-int]
906 | appendseg(segs, seg)
| ^~~~~~~~~
seg.c:930:1: warning: return type defaults to 'int' [-Wimplicit-int]
930 | freesegs(segs)
| ^~~~~~~~
seg.c:945:1: warning: return type defaults to 'int' [-Wimplicit-int]
945 | usage()
| ^~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wl,-z,relro -Wl,-z,now -o ncbi-seg seg.o genwin.o -lm
make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/ncbi-seg/
make -j3 install DESTDIR=/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
make[2]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
/usr/bin/mkdir -p '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin'
/usr/bin/mkdir -p '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/share/man/man1'
/usr/bin/install -c ncbi-seg '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin'
/usr/bin/install -c -m 644 ncbi-seg.1 '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/share/man/man1'
make[2]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-7_armhf.deb'.
dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../ncbi-seg_0.0.20000620-7_armhf.buildinfo
dpkg-genchanges --build=binary -O../ncbi-seg_0.0.20000620-7_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/6649 and its subdirectories
I: Current time: Sat Oct 12 14:19:07 -12 2024
I: pbuilder-time-stamp: 1728785947