I: pbuilder: network access will be disabled during build I: Current time: Wed Mar 5 19:49:34 -12 2025 I: pbuilder-time-stamp: 1741247374 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-2.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-2.dsc: unsupported subcommand dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7150/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6edf6af138ad4bf68ed0459ebae2ef1c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7150' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/pbuilderrc_Mpes --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/b1 --logfile b1/build.log python-bioframe_0.4.1-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff4a 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7150/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 420 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.2-1 [845 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.2-1 [1842 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.2-1 [1853 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf python3-numpy-dev armhf 1:2.2.3+ds-4 [133 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.1-2 [116 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-17 [263 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.1-2 [1835 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:2.2.3+ds-4 [3477 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.4.1-1 [1393 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.4-5 [84.9 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-7 [272 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [934 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.47-1 [264 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-2 [317 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-2 [371 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b4 [25.0 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b4 [46.4 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b3 [16.4 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.16-1 [698 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [483 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf blt armhf 2.5.3+dfsg-8 [5984 B] Get: 58 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-4 [539 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 64 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b2 [605 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf debhelper all 13.24.1 [920 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.2-1 [37.3 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.1-1 [8276 B] Get: 79 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.8.0-1 [222 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.8.0-1 [724 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20250108 [113 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf fonts-lyx all 2.4.3-1 [190 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.23-1+b1 [36.7 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libgpg-error0 armhf 1.51-3 [71.9 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libgcrypt20 armhf 1.11.0-7 [727 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.83.5-1 [1339 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.2.0-1 [419 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3.1 [145 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.3-1 [184 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.5.0-0.1 [114 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.5.0-0.1 [273 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.5.0-0.1 [112 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.5.0-0.1 [123 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.13.2-2 [1044 B] Get: 112 http://deb.debian.org/debian unstable/main armhf python3-attr all 25.1.0-1 [68.7 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf python3-brotli armhf 1.1.0-2+b7 [293 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 115 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf python3-charset-normalizer armhf 3.4.1-1+b1 [118 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf python3-contourpy armhf 1.3.1-1+b1 [181 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 119 http://deb.debian.org/debian unstable/main armhf python3-dateutil all 2.9.0-3 [79.3 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf python3-fs all 2.4.16-7 [95.2 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf python3-lxml armhf 5.3.1-1+b1 [1192 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf python3-lz4 armhf 4.4.0+dfsg-1+b1 [24.1 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.14.1-4+b1 [15.5 MB] Get: 126 http://deb.debian.org/debian unstable/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf python3-sympy all 1.13.3-5 [4148 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf python3-fonttools armhf 4.55.3-2+b1 [1393 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf python3-idna all 3.10-1 [42.0 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 133 http://deb.debian.org/debian unstable/main armhf python3-kiwisolver armhf 1.4.7-3+b1 [54.7 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 11.1.0-5+b1 [481 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf python3.13-tk armhf 3.13.2-1 [100 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf python3-tk armhf 3.13.2-1 [9516 B] Get: 137 http://deb.debian.org/debian unstable/main armhf python3-pil.imagetk armhf 11.1.0-5+b1 [81.2 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf python3-matplotlib armhf 3.8.3-7+b1 [22.9 MB] Get: 141 http://deb.debian.org/debian unstable/main armhf python3-pytz all 2025.1-3 [150 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf python3-tz all 2025.1-3 [4004 B] Get: 143 http://deb.debian.org/debian unstable/main armhf python3-pandas-lib armhf 2.2.3+dfsg-8+b1 [4141 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.4-1 [250 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf python3-urllib3 all 2.3.0-1 [114 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.45.1-1 [56.7 kB] Fetched 113 MB in 7s (17.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:armhf. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_armhf.deb ... Unpacking libpython3.13-stdlib:armhf (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_armhf.deb ... Unpacking python3.13 (3.13.2-1) ... 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Setting up libdeflate0:armhf (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libgcrypt20:armhf (1.11.0-7) ... Setting up libqhull-r8.0:armhf (2020.2-6+b2) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:armhf (2.1-6.1+b2) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Mar 6 07:51:11 UTC 2025. Universal Time is now: Thu Mar 6 07:51:11 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-3.1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libfribidi0:armhf (1.0.16-1) ... Setting up libimagequant0:armhf (2.18.0-1+b2) ... Setting up libunistring5:armhf (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.47-1) ... Setting up python3-numpy-dev:armhf (1:2.2.3+ds-4) ... Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:armhf (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:armhf (1.5.0-0.1) ... Setting up libffi8:armhf (3.4.7-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libopenjp2-7:armhf (2.5.3-1) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-7) ... Setting up openssl (3.4.1-1) ... Setting up libwebpmux3:armhf (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:armhf (1.5.0-0.1) ... Setting up libxext6:armhf (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:armhf (2.83.5-1) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libreadline8t64:armhf (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libxslt1.1:armhf (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:armhf (10.2.0-1) ... Setting up libxss1:armhf (1:1.2.3-1+b3) ... Setting up libfontconfig1:armhf (2.15.0-2) ... Setting up libpython3.13-stdlib:armhf (3.13.2-1) ... Setting up libpython3-stdlib:armhf (3.13.2-2) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b2) ... Setting up libxft2:armhf (2.3.6-1+b4) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:armhf (8.6.16-1) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up python3.13-tk (3.13.2-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-fs (2.4.16-7) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:armhf (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-4) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:armhf (5.3.1-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.1.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.14.1-4+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-lz4 (4.4.0+dfsg-1+b1) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-pytest (8.3.4-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-all (3.13.2-2) ... Setting up python3-tk:armhf (3.13.2-1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-pil:armhf (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-pil.imagetk:armhf (11.1.0-5+b1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up dh-python (6.20250108) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-2+b1) ... Setting up python3-matplotlib (3.8.3-7+b1) ... Processing triggers for libc-bin (2.41-3) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-2_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.4.2 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 13.97s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/ops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/vis.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/extras.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/ops.py to ops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/schemas.py to schemas.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/fileops.py to fileops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/resources.py to resources.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/vis.py to vis.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/extras.py to extras.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/stringops.py to stringops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/specs.py to specs.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/checks.py to checks.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/construction.py to construction.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/arrops.py to arrops.cpython-313.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/_version.py to _version.cpython-313.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-2_armhf.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7150 and its subdirectories I: Current time: Wed Mar 5 19:53:40 -12 2025 I: pbuilder-time-stamp: 1741247620