I: pbuilder: network access will be disabled during build
I: Current time: Sun Oct 20 01:05:01 +14 2024
I: pbuilder-time-stamp: 1729335901
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-bx_0.13.0-1.dsc]
I: copying [./python-bx_0.13.0.orig.tar.gz]
I: copying [./python-bx_0.13.0-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Sep 22 12:26:19 2024
gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
gpgv: issuer "tchet@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting python-bx in python-bx-0.13.0
dpkg-source: info: unpacking python-bx_0.13.0.orig.tar.gz
dpkg-source: info: unpacking python-bx_0.13.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying shebang.patch
dpkg-source: info: applying fix_BIN_OFFSETS_MAX
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/D01_modify_environment starting
debug: Running on virt32b.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Oct 19 11:05 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.2.32(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=2a2560bbb5254496ae5906e5ace8804d
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=13852
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yVQKNdUy/pbuilderrc_61E1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yVQKNdUy/b2 --logfile b2/build.log python-bx_0.13.0-1.dsc'
SUDO_GID=112
SUDO_UID=106
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:3142/
I: uname -a
Linux i-capture-the-hostname 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing, python3-pytest, python3-pytest-cython, python3-numpy, cython3
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19665 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
Package pybuild-plugin-pyproject is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev:any.
pbuilder-satisfydepends-dummy depends on python3-lzo; however:
Package python3-lzo is not installed.
pbuilder-satisfydepends-dummy depends on python3-pyparsing; however:
Package python3-pyparsing is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-cython; however:
Package python3-pytest-cython is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on cython3; however:
Package cython3 is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-lzo{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cython{a} python3-setuptools{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget
0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded.
Need to get 43.1 MB of archives. After unpacking 163 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-1 [800 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-1 [1809 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B]
Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-1 [1820 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-1 [671 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B]
Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.6-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB]
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Get: 26 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB]
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Get: 37 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.11+dfsg-1 [2265 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.3.0-1 [36.5 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB]
Get: 58 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 59 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 74.1.2-2 [213 kB]
Get: 61 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.20.2-1 [10.3 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 74.1.2-2 [736 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240824 [109 kB]
Get: 64 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB]
Get: 65 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.3-1 [139 kB]
Get: 66 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-6 [263 kB]
Get: 67 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 68 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 69 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get: 70 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB]
Get: 71 http://deb.debian.org/debian unstable/main armhf liblzo2-2 armhf 2.10-3 [47.6 kB]
Get: 72 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.7-1 [1848 kB]
Get: 73 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB]
Get: 74 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.7-1 [3808 kB]
Get: 75 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.12.6-1 [9952 B]
Get: 76 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.12.6-1 [1064 B]
Get: 77 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.1-1 [45.8 kB]
Get: 78 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get: 79 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get: 80 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.44.0-2 [53.4 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf python3-build all 1.2.2-1 [36.0 kB]
Get: 82 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get: 84 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.6-1 [1040 B]
Get: 85 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.7-1 [505 kB]
Get: 86 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.12.6-1 [26.1 kB]
Get: 87 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.12.6-1 [1068 B]
Get: 88 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get: 89 http://deb.debian.org/debian unstable/main armhf python3-lzo armhf 1.15-2 [7800 B]
Get: 90 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB]
Get: 91 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 92 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB]
Get: 93 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB]
Get: 94 http://deb.debian.org/debian unstable/main armhf python3-pytest-cython all 0.3.1-1 [8032 B]
Fetched 43.1 MB in 2s (18.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpython3.12-minimal:armhf (3.12.7-1) ...
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now: Sat Oct 19 11:08:35 UTC 2024.
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Setting up python3-build (1.2.2-1) ...
Setting up python3-lzo:armhf (1.15-2) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up libpython3-dev:armhf (3.12.6-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-pytest (8.3.3-1) ...
Setting up python3-typeguard (4.3.0-1) ...
Setting up python3-all (3.12.6-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up libpython3-all-dev:armhf (3.12.6-1) ...
Setting up python3-dev (3.12.6-1) ...
Setting up python3-pkg-resources (74.1.2-2) ...
Setting up python3-all-dev (3.12.6-1) ...
Setting up python3-setuptools (74.1.2-2) ...
Setting up python3-pytest-cython (0.3.1-1) ...
Setting up python3-numpy (1:1.26.4+ds-11) ...
Setting up dh-python (6.20240824) ...
Setting up pybuild-plugin-pyproject (6.20240824) ...
Processing triggers for libc-bin (2.40-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/python-bx-0.13.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bx_0.13.0-1_source.changes
dpkg-buildpackage: info: source package python-bx
dpkg-buildpackage: info: source version 0.13.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Detiste <tchet@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-bx-0.13.0'
find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f
grep -rli "Generated by Cython" lib/ | xargs -r rm
rm -rf lib/bx_python.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-bx-0.13.0'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.12_bx-python
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-armv7l-cpython-312
creating build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/wiggle_tests.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/binned_array.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/binned_array_tests.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/bitset_builders.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/interval_index_file_tests.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/bitset_utils.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/gene_reader.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/seqmapping.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/__init__.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/interval_index_file.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/filter.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/wiggle.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/bitset_tests.py -> build/lib.linux-armv7l-cpython-312/bx
copying lib/bx/seqmapping_tests.py -> build/lib.linux-armv7l-cpython-312/bx
creating build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/lrucache.py -> build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/fpconst.py -> build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/__init__.py -> build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/pstat.py -> build/lib.linux-armv7l-cpython-312/bx_extras
copying lib/bx_extras/stats.py -> build/lib.linux-armv7l-cpython-312/bx_extras
creating build/lib.linux-armv7l-cpython-312/bx/bbi
copying lib/bx/bbi/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/bbi
copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-armv7l-cpython-312/bx/bbi
creating build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/twobit.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/twobit_tests.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/nib_tests.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/qdna.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/fasta.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/core.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/nib.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/seq_tests.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/fasta_tests.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/seq.py -> build/lib.linux-armv7l-cpython-312/bx/seq
copying lib/bx/seq/qdna_tests.py -> build/lib.linux-armv7l-cpython-312/bx/seq
creating build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-armv7l-cpython-312/bx/pwm
creating build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/filecache_tests.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/seeklzop.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/cdb.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/seekbzip2.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/readlengths.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/binary_file.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/filecache.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-armv7l-cpython-312/bx/misc
copying lib/bx/misc/cdb_tests.py -> build/lib.linux-armv7l-cpython-312/bx/misc
creating build/lib.linux-armv7l-cpython-312/bx/arrays
copying lib/bx/arrays/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/arrays
copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-armv7l-cpython-312/bx/arrays
creating build/lib.linux-armv7l-cpython-312/bx/intseq
copying lib/bx/intseq/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/intseq
creating build/lib.linux-armv7l-cpython-312/bx/phylo
copying lib/bx/phylo/newick_tests.py -> build/lib.linux-armv7l-cpython-312/bx/phylo
copying lib/bx/phylo/phast.py -> build/lib.linux-armv7l-cpython-312/bx/phylo
copying lib/bx/phylo/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/phylo
copying lib/bx/phylo/phast_tests.py -> build/lib.linux-armv7l-cpython-312/bx/phylo
copying lib/bx/phylo/newick.py -> build/lib.linux-armv7l-cpython-312/bx/phylo
creating build/lib.linux-armv7l-cpython-312/bx/motif
copying lib/bx/motif/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/motif
copying lib/bx/motif/pwm.py -> build/lib.linux-armv7l-cpython-312/bx/motif
copying lib/bx/motif/pwm_tests.py -> build/lib.linux-armv7l-cpython-312/bx/motif
creating build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/epo.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/maf.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/core.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/lav_tests.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/score_tests.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/axt.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/epo_tests.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/maf_tests.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/score.py -> build/lib.linux-armv7l-cpython-312/bx/align
copying lib/bx/align/lav.py -> build/lib.linux-armv7l-cpython-312/bx/align
creating build/lib.linux-armv7l-cpython-312/bx/tabular
copying lib/bx/tabular/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/tabular
copying lib/bx/tabular/io.py -> build/lib.linux-armv7l-cpython-312/bx/tabular
creating build/lib.linux-armv7l-cpython-312/bx/cookbook
copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-armv7l-cpython-312/bx/cookbook
copying lib/bx/cookbook/attribute.py -> build/lib.linux-armv7l-cpython-312/bx/cookbook
copying lib/bx/cookbook/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/cookbook
creating build/lib.linux-armv7l-cpython-312/bx/intervals
copying lib/bx/intervals/random_intervals.py -> build/lib.linux-armv7l-cpython-312/bx/intervals
copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-armv7l-cpython-312/bx/intervals
copying lib/bx/intervals/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/intervals
copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-armv7l-cpython-312/bx/intervals
copying lib/bx/intervals/io.py -> build/lib.linux-armv7l-cpython-312/bx/intervals
creating build/lib.linux-armv7l-cpython-312/bx/motif/io
copying lib/bx/motif/io/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/motif/io
copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-armv7l-cpython-312/bx/motif/io
copying lib/bx/motif/io/transfac.py -> build/lib.linux-armv7l-cpython-312/bx/motif/io
creating build/lib.linux-armv7l-cpython-312/bx/motif/logo
copying lib/bx/motif/logo/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/motif/logo
creating build/lib.linux-armv7l-cpython-312/bx/align/tools
copying lib/bx/align/tools/fuse.py -> build/lib.linux-armv7l-cpython-312/bx/align/tools
copying lib/bx/align/tools/chop.py -> build/lib.linux-armv7l-cpython-312/bx/align/tools
copying lib/bx/align/tools/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/align/tools
copying lib/bx/align/tools/tile.py -> build/lib.linux-armv7l-cpython-312/bx/align/tools
copying lib/bx/align/tools/thread.py -> build/lib.linux-armv7l-cpython-312/bx/align/tools
creating build/lib.linux-armv7l-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/core.py -> build/lib.linux-armv7l-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-armv7l-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/quality.py -> build/lib.linux-armv7l-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-armv7l-cpython-312/bx/align/sitemask
creating build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/concat.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/complement.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/join.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/merge.py -> build/lib.linux-armv7l-cpython-312/bx/intervals/operations
copying lib/bx/motif/logo/template.ps -> build/lib.linux-armv7l-cpython-312/bx/motif/logo
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bitset.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bitset.pyx because it changed.
[1/1] Cythonizing lib/bx/bitset.pyx
building 'bx.bitset' extension
creating build/temp.linux-armv7l-cpython-312
creating build/temp.linux-armv7l-cpython-312/lib
creating build/temp.linux-armv7l-cpython-312/lib/bx
creating build/temp.linux-armv7l-cpython-312/src
creating build/temp.linux-armv7l-cpython-312/src/kent
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c lib/bx/bitset.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bitset.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/binBits.c -o build/temp.linux-armv7l-cpython-312/src/binBits.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/kent/bits.c -o build/temp.linux-armv7l-cpython-312/src/kent/bits.o
src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $";
| ^~~~~
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/kent/common.c -o build/temp.linux-armv7l-cpython-312/src/kent/common.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bitset.o build/temp.linux-armv7l-cpython-312/src/binBits.o build/temp.linux-armv7l-cpython-312/src/kent/bits.o build/temp.linux-armv7l-cpython-312/src/kent/common.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bitset.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intervals/intersection.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intervals/intersection.pyx because it changed.
[1/1] Cythonizing lib/bx/intervals/intersection.pyx
building 'bx.intervals.intersection' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/intervals
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/intervals/intersection.c -o build/temp.linux-armv7l-cpython-312/lib/bx/intervals/intersection.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/intervals/intersection.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/intervals/intersection.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/_core.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/_core.pyx because it changed.
[1/1] Cythonizing lib/bx/align/_core.pyx
building 'bx.align._core' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/align
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/_core.c -o build/temp.linux-armv7l-cpython-312/lib/bx/align/_core.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/align/_core.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/align/_core.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/seq/_nib.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/seq/_nib.pyx because it changed.
[1/1] Cythonizing lib/bx/seq/_nib.pyx
building 'bx.seq._nib' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/seq
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/seq/_nib.c -o build/temp.linux-armv7l-cpython-312/lib/bx/seq/_nib.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/seq/_nib.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/seq/_nib.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/seq/_twobit.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/seq/_twobit.pyx because it changed.
[1/1] Cythonizing lib/bx/seq/_twobit.pyx
building 'bx.seq._twobit' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/seq/_twobit.c -o build/temp.linux-armv7l-cpython-312/lib/bx/seq/_twobit.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/seq/_twobit.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/seq/_twobit.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/_seqmapping.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/_seqmapping.pyx because it changed.
[1/1] Cythonizing lib/bx/_seqmapping.pyx
building 'bx._seqmapping' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/_seqmapping.c -o build/temp.linux-armv7l-cpython-312/lib/bx/_seqmapping.o
In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’,
inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:5104:13,
inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:8107:7:
lib/bx/_seqmapping.c:5142:33: warning: argument 1 value ‘4294967292’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
5142 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int)))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.12/Python.h:23,
from lib/bx/_seqmapping.c:29:
/usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/_seqmapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/_seqmapping.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/misc/bgzf.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/misc/bgzf.pyx because it changed.
[1/1] Cythonizing lib/bx/misc/bgzf.pyx
building 'bx.misc.bgzf' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/misc
creating build/temp.linux-armv7l-cpython-312/src/samtools
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.12 -c lib/bx/misc/bgzf.c -o build/temp.linux-armv7l-cpython-312/lib/bx/misc/bgzf.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.12 -c src/samtools/bgzf.c -o build/temp.linux-armv7l-cpython-312/src/samtools/bgzf.o
src/samtools/bgzf.c: In function ‘cache_block’:
src/samtools/bgzf.c:422:47: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) {
| ^
src/samtools/bgzf.c: In function ‘read_block’:
src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
462 | if (count != sizeof(header)) {
| ^~
src/samtools/bgzf.c: In function ‘bgzf_close’:
src/samtools/bgzf.c:603:29: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
603 | int count, block_length = deflate_block(fp, 0);
| ^~~~~
src/samtools/bgzf.c: In function ‘bgzf_check_EOF’:
src/samtools/bgzf.c:662:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
662 | fread(buf, 1, 28, fp->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/misc/bgzf.o build/temp.linux-armv7l-cpython-312/src/samtools/bgzf.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-312/bx/misc/bgzf.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intervals/cluster.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intervals/cluster.pyx because it changed.
[1/1] Cythonizing lib/bx/intervals/cluster.pyx
building 'bx.intervals.cluster' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/intervals/cluster.c -o build/temp.linux-armv7l-cpython-312/lib/bx/intervals/cluster.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c src/cluster.c -o build/temp.linux-armv7l-cpython-312/src/cluster.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/intervals/cluster.o build/temp.linux-armv7l-cpython-312/src/cluster.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/intervals/cluster.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/pwm/_position_weight_matrix.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/pwm/_position_weight_matrix.pyx because it changed.
[1/1] Cythonizing lib/bx/pwm/_position_weight_matrix.pyx
building 'bx.pwm._position_weight_matrix' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/pwm
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-armv7l-cpython-312/lib/bx/pwm/_position_weight_matrix.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c src/pwm_utils.c -o build/temp.linux-armv7l-cpython-312/src/pwm_utils.o
src/pwm_utils.c: In function ‘main’:
src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
12 | if (strlen(argv[2]) != string_size) {
| ^~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-armv7l-cpython-312/src/pwm_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/pwm/_position_weight_matrix.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/motif/_pwm.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/motif/_pwm.pyx because it changed.
[1/1] Cythonizing lib/bx/motif/_pwm.pyx
building 'bx.motif._pwm' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/motif
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/motif/_pwm.c -o build/temp.linux-armv7l-cpython-312/lib/bx/motif/_pwm.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/motif/_pwm.c:1240:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1483:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
1483 | _import_array(void)
| ^~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/motif/_pwm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/motif/_pwm.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/array_tree.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/arrays/array_tree.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/array_tree.pyx
building 'bx.arrays.array_tree' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/arrays
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/arrays/array_tree.c -o build/temp.linux-armv7l-cpython-312/lib/bx/arrays/array_tree.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/arrays/array_tree.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/arrays/array_tree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/arrays/array_tree.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bpt_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bpt_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bpt_file.pyx
building 'bx.bbi.bpt_file' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/bbi
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bpt_file.o
lib/bx/bbi/bpt_file.c: In function ‘__pyx_pf_2bx_3bbi_8bpt_file_7BPTFile_6find’:
lib/bx/bbi/bpt_file.c:4246:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
4246 | __pyx_t_2 = (__pyx_t_1 > __pyx_v_self->key_size);
| ^
lib/bx/bbi/bpt_file.c:4277:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
4277 | __pyx_t_2 = (__pyx_t_1 < __pyx_v_self->key_size);
| ^
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bpt_file.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bbi/bpt_file.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/cirtree_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/cirtree_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/cirtree_file.pyx
building 'bx.bbi.cirtree_file' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bbi/cirtree_file.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bbi/cirtree_file.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bbi/cirtree_file.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bbi_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bbi_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bbi_file.pyx
building 'bx.bbi.bbi_file' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bbi_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bbi_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bbi_file.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bbi/bbi_file.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bigwig_file.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bigwig_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bigwig_file.pyx
building 'bx.bbi.bigwig_file' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bigwig_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigwig_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6522:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ^
lib/bx/bbi/bigwig_file.c:6551:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’:
lib/bx/bbi/bigwig_file.c:8804:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
8804 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6551:29: warning: ‘__pyx_v_e’ may be used uninitialized [-Wmaybe-uninitialized]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5856:7: note: ‘__pyx_v_e’ was declared here
5856 | int __pyx_v_e;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6522:29: warning: ‘__pyx_v_s’ may be used uninitialized [-Wmaybe-uninitialized]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5855:7: note: ‘__pyx_v_s’ was declared here
5855 | int __pyx_v_s;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6608:18: warning: ‘__pyx_v_val’ may be used uninitialized [-Wmaybe-uninitialized]
6608 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 88, __pyx_L1_error)
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5857:9: note: ‘__pyx_v_val’ was declared here
5857 | float __pyx_v_val;
| ^~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bigwig_file.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bbi/bigwig_file.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bigbed_file.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bigbed_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bigbed_file.pyx
building 'bx.bbi.bigbed_file' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bigbed_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigbed_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/bbi/bigbed_file.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/bbi/bigbed_file.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/_epo.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/_epo.pyx because it changed.
[1/1] Cythonizing lib/bx/align/_epo.pyx
building 'bx.align._epo' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/align/_epo.c -o build/temp.linux-armv7l-cpython-312/lib/bx/align/_epo.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/align/_epo.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’:
lib/bx/align/_epo.c:8904:236: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
8904 | __pyx_t_5 = ((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_13, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen);
| ^~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/align/_epo.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/align/_epo.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/bed.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/arrays/bed.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/bed.pyx
building 'bx.arrays.bed' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/arrays/bed.c -o build/temp.linux-armv7l-cpython-312/lib/bx/arrays/bed.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/arrays/bed.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/arrays/bed.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/wiggle.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code
Compiling lib/bx/arrays/wiggle.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/wiggle.pyx
building 'bx.arrays.wiggle' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/arrays/wiggle.c -o build/temp.linux-armv7l-cpython-312/lib/bx/arrays/wiggle.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/arrays/wiggle.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/arrays/wiggle.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/sitemask/_cpg.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/sitemask/_cpg.pyx because it changed.
[1/1] Cythonizing lib/bx/align/sitemask/_cpg.pyx
building 'bx.align.sitemask._cpg' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/align/sitemask
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-armv7l-cpython-312/lib/bx/align/sitemask/_cpg.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-armv7l-cpython-312/lib/bx/align/sitemask/find_cpg.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/align/sitemask/_cpg.o build/temp.linux-armv7l-cpython-312/lib/bx/align/sitemask/find_cpg.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/align/sitemask/_cpg.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intseq/ngramcount.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intseq/ngramcount.pyx because it changed.
[1/1] Cythonizing lib/bx/intseq/ngramcount.pyx
building 'bx.intseq.ngramcount' extension
creating build/temp.linux-armv7l-cpython-312/lib/bx/intseq
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-armv7l-cpython-312/lib/bx/intseq/ngramcount.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/intseq/ngramcount.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/intseq/ngramcount.cpython-312-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/misc/_seekbzip2.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/misc/_seekbzip2.pyx because it changed.
[1/1] Cythonizing lib/bx/misc/_seekbzip2.pyx
building 'bx.misc._seekbzip2' extension
creating build/temp.linux-armv7l-cpython-312/src/bunzip
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.12 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-armv7l-cpython-312/lib/bx/misc/_seekbzip2.o
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.12 -c src/bunzip/micro-bunzip.c -o build/temp.linux-armv7l-cpython-312/src/bunzip/micro-bunzip.o
src/bunzip/micro-bunzip.c: In function ‘get_next_block’:
src/bunzip/micro-bunzip.c:151:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
151 | if((origPtr=get_bits(bd,24)) > dbufSize) return RETVAL_DATA_ERROR;
| ^
src/bunzip/micro-bunzip.c:298:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
298 | while (bd->inbufBitCount<hufGroup->maxLen) {
| ^
src/bunzip/micro-bunzip.c:400:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR;
| ^~
src/bunzip/micro-bunzip.c: In function ‘start_bunzip’:
src/bunzip/micro-bunzip.c:629:26: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign]
629 | bd->inbuf=inbuf;
| ^
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/lib/bx/misc/_seekbzip2.o build/temp.linux-armv7l-cpython-312/src/bunzip/micro-bunzip.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/bx/misc/_seekbzip2.cpython-312-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.12
copying and adjusting scripts/maf_filter.py -> build/scripts-3.12
copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.12
copying and adjusting scripts/maf_select.py -> build/scripts-3.12
copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.12
copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.12
copying and adjusting scripts/out_to_chain.py -> build/scripts-3.12
copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile.py -> build/scripts-3.12
copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.12
copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.12
copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.12
copying and adjusting scripts/bed_intersect.py -> build/scripts-3.12
copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.12
copying and adjusting scripts/bed_complement.py -> build/scripts-3.12
copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.12
copying and adjusting scripts/align_print_template.py -> build/scripts-3.12
copying and adjusting scripts/interval_join.py -> build/scripts-3.12
copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.12
copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.12
copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.12
copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.12
copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.12
copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.12
copying and adjusting scripts/nib_length.py -> build/scripts-3.12
copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.12
copying and adjusting scripts/table_filter.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.12
copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.12
copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.12
copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.12
copying and adjusting scripts/maf_chunk.py -> build/scripts-3.12
copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.12
copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.12
copying and adjusting scripts/random_lines.py -> build/scripts-3.12
copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.12
copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.12
copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.12
copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.12
copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/prefix_lines.py -> build/scripts-3.12
copying and adjusting scripts/maf_chop.py -> build/scripts-3.12
copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.12
copying and adjusting scripts/bed_coverage.py -> build/scripts-3.12
copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.12
copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.12
copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.12
copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.12
copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.12
copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.12
copying and adjusting scripts/pretty_table.py -> build/scripts-3.12
copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.12
copying and adjusting scripts/maf_build_index.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.12
copying and adjusting scripts/table_add_column.py -> build/scripts-3.12
copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.12
copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.12
copying and adjusting scripts/maf_count.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.12
copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.12
copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.12
copying and adjusting scripts/maf_randomize.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/maf_truncate.py -> build/scripts-3.12
copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/bnMapper.py -> build/scripts-3.12
copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.12
copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.12
copying and adjusting scripts/line_select.py -> build/scripts-3.12
copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.12
copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.12
copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.12
copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.12
copying and adjusting scripts/mask_quality.py -> build/scripts-3.12
copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.12
copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.12
copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.12
copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.12
copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.12
changing mode of build/scripts-3.12/maf_filter.py from 644 to 755
changing mode of build/scripts-3.12/maf_filter_max_wc.py from 644 to 755
changing mode of build/scripts-3.12/maf_select.py from 644 to 755
changing mode of build/scripts-3.12/aggregate_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.12/maf_species_in_all_files.py from 644 to 755
changing mode of build/scripts-3.12/out_to_chain.py from 644 to 755
changing mode of build/scripts-3.12/maf_percent_columns_matching.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile.py from 644 to 755
changing mode of build/scripts-3.12/nib_chrom_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/lav_to_maf.py from 644 to 755
changing mode of build/scripts-3.12/int_seqs_to_char_strings.py from 644 to 755
changing mode of build/scripts-3.12/maf_col_counts_all.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_chrom_ranges.py from 644 to 755
changing mode of build/scripts-3.12/bed_intersect.py from 644 to 755
changing mode of build/scripts-3.12/gene_fourfold_sites.py from 644 to 755
changing mode of build/scripts-3.12/bed_complement.py from 644 to 755
changing mode of build/scripts-3.12/bed_count_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/lav_to_axt.py from 644 to 755
changing mode of build/scripts-3.12/align_print_template.py from 644 to 755
changing mode of build/scripts-3.12/interval_join.py from 644 to 755
changing mode of build/scripts-3.12/div_snp_table_chr.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile_2.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile_2bit.py from 644 to 755
changing mode of build/scripts-3.12/lzop_build_offset_table.py from 644 to 755
changing mode of build/scripts-3.12/maf_region_coverage_by_src.py from 644 to 755
changing mode of build/scripts-3.12/maf_limit_to_species.py from 644 to 755
changing mode of build/scripts-3.12/interval_count_intersections.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_concat_fasta.py from 644 to 755
changing mode of build/scripts-3.12/bed_count_by_interval.py from 644 to 755
changing mode of build/scripts-3.12/nib_length.py from 644 to 755
changing mode of build/scripts-3.12/maf_mask_cpg.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_int_seqs.py from 644 to 755
changing mode of build/scripts-3.12/table_filter.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_axt.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/maf_div_sites.py from 644 to 755
changing mode of build/scripts-3.12/bed_diff_basewise_summary.py from 644 to 755
changing mode of build/scripts-3.12/axt_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_lav.py from 644 to 755
changing mode of build/scripts-3.12/maf_interval_alignibility.py from 644 to 755
changing mode of build/scripts-3.12/maf_chunk.py from 644 to 755
changing mode of build/scripts-3.12/bed_extend_to.py from 644 to 755
changing mode of build/scripts-3.12/bed_rand_intersect.py from 644 to 755
changing mode of build/scripts-3.12/random_lines.py from 644 to 755
changing mode of build/scripts-3.12/mMK_bitset.py from 644 to 755
changing mode of build/scripts-3.12/maf_col_counts.py from 644 to 755
changing mode of build/scripts-3.12/maf_split_by_src.py from 644 to 755
changing mode of build/scripts-3.12/qv_to_bqv.py from 644 to 755
changing mode of build/scripts-3.12/maf_drop_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/prefix_lines.py from 644 to 755
changing mode of build/scripts-3.12/maf_chop.py from 644 to 755
changing mode of build/scripts-3.12/bed_bigwig_profile.py from 644 to 755
changing mode of build/scripts-3.12/bed_coverage.py from 644 to 755
changing mode of build/scripts-3.12/maf_covered_ranges.py from 644 to 755
changing mode of build/scripts-3.12/maf_percent_identity.py from 644 to 755
changing mode of build/scripts-3.12/maf_print_chroms.py from 644 to 755
changing mode of build/scripts-3.12/find_in_sorted_file.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_chr_binned_array.py from 644 to 755
changing mode of build/scripts-3.12/maf_gc_content.py from 644 to 755
changing mode of build/scripts-3.12/bed_build_windows.py from 644 to 755
changing mode of build/scripts-3.12/pretty_table.py from 644 to 755
changing mode of build/scripts-3.12/get_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.12/maf_build_index.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_array_tree.py from 644 to 755
changing mode of build/scripts-3.12/table_add_column.py from 644 to 755
changing mode of build/scripts-3.12/maf_shuffle_columns.py from 644 to 755
changing mode of build/scripts-3.12/maf_word_frequency.py from 644 to 755
changing mode of build/scripts-3.12/maf_count.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_binned_array.py from 644 to 755
changing mode of build/scripts-3.12/ucsc_gene_table_to_intervals.py from 644 to 755
changing mode of build/scripts-3.12/bed_subtract_basewise.py from 644 to 755
changing mode of build/scripts-3.12/maf_randomize.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_ranges_indexed.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/maf_truncate.py from 644 to 755
changing mode of build/scripts-3.12/nib_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/bnMapper.py from 644 to 755
changing mode of build/scripts-3.12/bed_coverage_by_interval.py from 644 to 755
changing mode of build/scripts-3.12/maf_translate_chars.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.12/line_select.py from 644 to 755
changing mode of build/scripts-3.12/maf_gap_frequency.py from 644 to 755
changing mode of build/scripts-3.12/maf_print_scores.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_simple.py from 644 to 755
changing mode of build/scripts-3.12/tfloc_summary.py from 644 to 755
changing mode of build/scripts-3.12/one_field_per_line.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_maf.py from 644 to 755
changing mode of build/scripts-3.12/mask_quality.py from 644 to 755
changing mode of build/scripts-3.12/maf_thread_for_species.py from 644 to 755
changing mode of build/scripts-3.12/maf_covered_regions.py from 644 to 755
changing mode of build/scripts-3.12/maf_mapping_word_frequency.py from 644 to 755
changing mode of build/scripts-3.12/bed_merge_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/bed_intersect_basewise.py from 644 to 755
changing mode of build/scripts-3.12/maf_mean_length_ungapped_piece.py from 644 to 755
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/bx
copying build/lib.linux-armv7l-cpython-312/bx/wiggle_tests.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/bpt_file.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/bigwig_file.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/cirtree_file.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/bigbed_file.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/bigwig_tests.py -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/bbi/bbi_file.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/bbi
copying build/lib.linux-armv7l-cpython-312/bx/binned_array.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/binned_array_tests.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/_nib.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/twobit.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/twobit_tests.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/nib_tests.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/qdna.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/fasta.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/core.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/nib.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/seq_tests.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/fasta_tests.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/_twobit.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/seq.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/seq/qdna_tests.py -> build/bdist.linux-armv7l/wheel/./bx/seq
copying build/lib.linux-armv7l-cpython-312/bx/bitset_builders.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/interval_index_file_tests.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/bitset_utils.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/pwm_score_maf.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/_position_weight_matrix.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/maf_select_motifs.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/bed_score_aligned_string.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/pwm_score_motifs.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/pwm_tests.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/pwm_score_positions.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/pwm/position_weight_matrix.py -> build/bdist.linux-armv7l/wheel/./bx/pwm
copying build/lib.linux-armv7l-cpython-312/bx/gene_reader.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/seqmapping.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/__init__.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/interval_index_file.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/filecache_tests.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/bgzf.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/seekbzip2_tests.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/seeklzop.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/cdb.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/seeklzop_tests.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/_seekbzip2.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/seekbzip2.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/readlengths.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/binary_file.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/filecache.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/bgzf_tests.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/misc/cdb_tests.py -> build/bdist.linux-armv7l/wheel/./bx/misc
copying build/lib.linux-armv7l-cpython-312/bx/_seqmapping.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/arrays/wiggle.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/arrays/array_tree.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/arrays/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/arrays/bed.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/arrays/array_tree_tests.py -> build/bdist.linux-armv7l/wheel/./bx/arrays
copying build/lib.linux-armv7l-cpython-312/bx/filter.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/intseq
copying build/lib.linux-armv7l-cpython-312/bx/intseq/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/intseq
copying build/lib.linux-armv7l-cpython-312/bx/intseq/ngramcount.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/intseq
creating build/bdist.linux-armv7l/wheel/bx/phylo
copying build/lib.linux-armv7l-cpython-312/bx/phylo/newick_tests.py -> build/bdist.linux-armv7l/wheel/./bx/phylo
copying build/lib.linux-armv7l-cpython-312/bx/phylo/phast.py -> build/bdist.linux-armv7l/wheel/./bx/phylo
copying build/lib.linux-armv7l-cpython-312/bx/phylo/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/phylo
copying build/lib.linux-armv7l-cpython-312/bx/phylo/phast_tests.py -> build/bdist.linux-armv7l/wheel/./bx/phylo
copying build/lib.linux-armv7l-cpython-312/bx/phylo/newick.py -> build/bdist.linux-armv7l/wheel/./bx/phylo
creating build/bdist.linux-armv7l/wheel/bx/motif
creating build/bdist.linux-armv7l/wheel/bx/motif/io
copying build/lib.linux-armv7l-cpython-312/bx/motif/io/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/motif/io
copying build/lib.linux-armv7l-cpython-312/bx/motif/io/transfac_tests.py -> build/bdist.linux-armv7l/wheel/./bx/motif/io
copying build/lib.linux-armv7l-cpython-312/bx/motif/io/transfac.py -> build/bdist.linux-armv7l/wheel/./bx/motif/io
copying build/lib.linux-armv7l-cpython-312/bx/motif/_pwm.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/motif
copying build/lib.linux-armv7l-cpython-312/bx/motif/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/motif
copying build/lib.linux-armv7l-cpython-312/bx/motif/pwm.py -> build/bdist.linux-armv7l/wheel/./bx/motif
copying build/lib.linux-armv7l-cpython-312/bx/motif/pwm_tests.py -> build/bdist.linux-armv7l/wheel/./bx/motif
creating build/bdist.linux-armv7l/wheel/bx/motif/logo
copying build/lib.linux-armv7l-cpython-312/bx/motif/logo/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/motif/logo
copying build/lib.linux-armv7l-cpython-312/bx/motif/logo/template.ps -> build/bdist.linux-armv7l/wheel/./bx/motif/logo
copying build/lib.linux-armv7l-cpython-312/bx/bitset.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/wiggle.py -> build/bdist.linux-armv7l/wheel/./bx
copying build/lib.linux-armv7l-cpython-312/bx/bitset_tests.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/epo.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/maf.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/_core.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/core.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/lav_tests.py -> build/bdist.linux-armv7l/wheel/./bx/align
creating build/bdist.linux-armv7l/wheel/bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/tools/fuse.py -> build/bdist.linux-armv7l/wheel/./bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/tools/chop.py -> build/bdist.linux-armv7l/wheel/./bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/tools/tile.py -> build/bdist.linux-armv7l/wheel/./bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/tools/thread.py -> build/bdist.linux-armv7l/wheel/./bx/align/tools
copying build/lib.linux-armv7l-cpython-312/bx/align/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/score_tests.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/axt.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/epo_tests.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/maf_tests.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/score.py -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/_epo.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/align
copying build/lib.linux-armv7l-cpython-312/bx/align/lav.py -> build/bdist.linux-armv7l/wheel/./bx/align
creating build/bdist.linux-armv7l/wheel/bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/core.py -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/sitemask_tests.py -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/_cpg.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/quality.py -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
copying build/lib.linux-armv7l-cpython-312/bx/align/sitemask/cpg.py -> build/bdist.linux-armv7l/wheel/./bx/align/sitemask
creating build/bdist.linux-armv7l/wheel/bx/tabular
copying build/lib.linux-armv7l-cpython-312/bx/tabular/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/tabular
copying build/lib.linux-armv7l-cpython-312/bx/tabular/io.py -> build/bdist.linux-armv7l/wheel/./bx/tabular
creating build/bdist.linux-armv7l/wheel/bx/cookbook
copying build/lib.linux-armv7l-cpython-312/bx/cookbook/doc_optparse.py -> build/bdist.linux-armv7l/wheel/./bx/cookbook
copying build/lib.linux-armv7l-cpython-312/bx/cookbook/attribute.py -> build/bdist.linux-armv7l/wheel/./bx/cookbook
copying build/lib.linux-armv7l-cpython-312/bx/cookbook/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/cookbook
copying build/lib.linux-armv7l-cpython-312/bx/seqmapping_tests.py -> build/bdist.linux-armv7l/wheel/./bx
creating build/bdist.linux-armv7l/wheel/bx/intervals
creating build/bdist.linux-armv7l/wheel/bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/concat.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/coverage.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/find_clusters.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/intersect.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/complement.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/join.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/subtract.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/base_coverage.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/quicksect.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/operations/merge.py -> build/bdist.linux-armv7l/wheel/./bx/intervals/operations
copying build/lib.linux-armv7l-cpython-312/bx/intervals/intersection.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/cluster.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/random_intervals.py -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/cluster_tests.py -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/intersection_tests.py -> build/bdist.linux-armv7l/wheel/./bx/intervals
copying build/lib.linux-armv7l-cpython-312/bx/intervals/io.py -> build/bdist.linux-armv7l/wheel/./bx/intervals
creating build/bdist.linux-armv7l/wheel/bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/lrucache.py -> build/bdist.linux-armv7l/wheel/./bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/fpconst.py -> build/bdist.linux-armv7l/wheel/./bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/__init__.py -> build/bdist.linux-armv7l/wheel/./bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/fpconst_tests.py -> build/bdist.linux-armv7l/wheel/./bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/pstat.py -> build/bdist.linux-armv7l/wheel/./bx_extras
copying build/lib.linux-armv7l-cpython-312/bx_extras/stats.py -> build/bdist.linux-armv7l/wheel/./bx_extras
running install_egg_info
running egg_info
creating lib/bx_python.egg-info
writing lib/bx_python.egg-info/PKG-INFO
writing dependency_links to lib/bx_python.egg-info/dependency_links.txt
writing requirements to lib/bx_python.egg-info/requires.txt
writing top-level names to lib/bx_python.egg-info/top_level.txt
writing manifest file 'lib/bx_python.egg-info/SOURCES.txt'
reading manifest file 'lib/bx_python.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'lib/bx_python.egg-info/SOURCES.txt'
Copying lib/bx_python.egg-info to build/bdist.linux-armv7l/wheel/./bx_python-0.13.0.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data
creating build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_filter.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_filter_max_wc.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_select.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_species_in_all_files.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/out_to_chain.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_percent_columns_matching.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_chrom_intervals_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lav_to_maf.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/int_seqs_to_char_strings.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_col_counts_all.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_chrom_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_intersect.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/gene_fourfold_sites.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_complement.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_count_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lav_to_axt.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/align_print_template.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/interval_join.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/div_snp_table_chr.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile_2.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile_2bit.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lzop_build_offset_table.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_region_coverage_by_src.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/interval_count_intersections.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_count_by_interval.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_length.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mask_cpg.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_int_seqs.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/table_filter.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_axt.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_div_sites.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_diff_basewise_summary.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_extract_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_interval_alignibility.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_chunk.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_extend_to.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_rand_intersect.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/random_lines.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/mMK_bitset.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_col_counts.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_split_by_src.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/qv_to_bqv.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_drop_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/prefix_lines.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_chop.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_bigwig_profile.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_coverage.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_covered_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_percent_identity.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_print_chroms.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/find_in_sorted_file.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_chr_binned_array.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_gc_content.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_build_windows.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/pretty_table.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/get_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_build_index.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_array_tree.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/table_add_column.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_shuffle_columns.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_word_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_count.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_binned_array.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_subtract_basewise.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_randomize.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_ranges_indexed.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_truncate.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_intervals_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bnMapper.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_coverage_by_interval.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_translate_chars.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/line_select.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_gap_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_print_scores.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/tfloc_summary.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/one_field_per_line.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_maf.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/mask_quality.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_covered_regions.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mapping_word_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_merge_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_intersect_basewise.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mean_length_ungapped_piece.py -> build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_filter.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_filter_max_wc.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_select.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_species_in_all_files.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/out_to_chain.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_tile.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/lav_to_maf.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_col_counts_all.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_intersect.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/gene_fourfold_sites.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_complement.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_count_overlapping.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/lav_to_axt.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/align_print_template.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/interval_join.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/div_snp_table_chr.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_tile_2.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_tile_2bit.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/lzop_build_offset_table.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_limit_to_species.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/interval_count_intersections.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_count_by_interval.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/nib_length.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_mask_cpg.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_to_int_seqs.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/table_filter.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_to_axt.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_to_fasta.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_div_sites.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/axt_extract_ranges.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/axt_to_lav.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_interval_alignibility.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_chunk.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_extend_to.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_rand_intersect.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/random_lines.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/mMK_bitset.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_col_counts.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_split_by_src.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/qv_to_bqv.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_drop_overlapping.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/prefix_lines.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_chop.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_bigwig_profile.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_coverage.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_covered_ranges.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_percent_identity.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_print_chroms.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/find_in_sorted_file.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_gc_content.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_build_windows.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/pretty_table.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/get_scores_in_intervals.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_build_index.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/table_add_column.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_shuffle_columns.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_word_frequency.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_count.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_subtract_basewise.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_randomize.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/axt_to_fasta.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_truncate.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bnMapper.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_translate_chars.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/line_select.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_gap_frequency.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_print_scores.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/wiggle_to_simple.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/tfloc_summary.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/one_field_per_line.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/axt_to_maf.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/mask_quality.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_thread_for_species.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_covered_regions.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_merge_overlapping.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/bed_intersect_basewise.py to 755
changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py to 755
creating build/bdist.linux-armv7l/wheel/bx_python-0.13.0.dist-info/WHEEL
creating '/build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.12_bx-python/.tmp-1nrxb_2p/bx_python-0.13.0-cp312-cp312-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'bx/__init__.py'
adding 'bx/_seqmapping.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/binned_array.py'
adding 'bx/binned_array_tests.py'
adding 'bx/bitset.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bitset_builders.py'
adding 'bx/bitset_tests.py'
adding 'bx/bitset_utils.py'
adding 'bx/filter.py'
adding 'bx/gene_reader.py'
adding 'bx/interval_index_file.py'
adding 'bx/interval_index_file_tests.py'
adding 'bx/seqmapping.py'
adding 'bx/seqmapping_tests.py'
adding 'bx/wiggle.py'
adding 'bx/wiggle_tests.py'
adding 'bx/align/__init__.py'
adding 'bx/align/_core.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/align/_epo.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/align/axt.py'
adding 'bx/align/core.py'
adding 'bx/align/epo.py'
adding 'bx/align/epo_tests.py'
adding 'bx/align/lav.py'
adding 'bx/align/lav_tests.py'
adding 'bx/align/maf.py'
adding 'bx/align/maf_tests.py'
adding 'bx/align/score.py'
adding 'bx/align/score_tests.py'
adding 'bx/align/sitemask/__init__.py'
adding 'bx/align/sitemask/_cpg.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/align/sitemask/core.py'
adding 'bx/align/sitemask/cpg.py'
adding 'bx/align/sitemask/quality.py'
adding 'bx/align/sitemask/sitemask_tests.py'
adding 'bx/align/tools/__init__.py'
adding 'bx/align/tools/chop.py'
adding 'bx/align/tools/fuse.py'
adding 'bx/align/tools/thread.py'
adding 'bx/align/tools/tile.py'
adding 'bx/arrays/__init__.py'
adding 'bx/arrays/array_tree.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/arrays/array_tree_tests.py'
adding 'bx/arrays/bed.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/arrays/wiggle.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bbi/__init__.py'
adding 'bx/bbi/bbi_file.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bbi/bigbed_file.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bbi/bigwig_file.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bbi/bigwig_tests.py'
adding 'bx/bbi/bpt_file.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/bbi/cirtree_file.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/cookbook/__init__.py'
adding 'bx/cookbook/attribute.py'
adding 'bx/cookbook/doc_optparse.py'
adding 'bx/intervals/__init__.py'
adding 'bx/intervals/cluster.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/intervals/cluster_tests.py'
adding 'bx/intervals/intersection.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/intervals/intersection_tests.py'
adding 'bx/intervals/io.py'
adding 'bx/intervals/random_intervals.py'
adding 'bx/intervals/operations/__init__.py'
adding 'bx/intervals/operations/base_coverage.py'
adding 'bx/intervals/operations/complement.py'
adding 'bx/intervals/operations/concat.py'
adding 'bx/intervals/operations/coverage.py'
adding 'bx/intervals/operations/find_clusters.py'
adding 'bx/intervals/operations/intersect.py'
adding 'bx/intervals/operations/join.py'
adding 'bx/intervals/operations/merge.py'
adding 'bx/intervals/operations/quicksect.py'
adding 'bx/intervals/operations/subtract.py'
adding 'bx/intseq/__init__.py'
adding 'bx/intseq/ngramcount.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/misc/__init__.py'
adding 'bx/misc/_seekbzip2.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/misc/bgzf.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/misc/bgzf_tests.py'
adding 'bx/misc/binary_file.py'
adding 'bx/misc/cdb.py'
adding 'bx/misc/cdb_tests.py'
adding 'bx/misc/filecache.py'
adding 'bx/misc/filecache_tests.py'
adding 'bx/misc/readlengths.py'
adding 'bx/misc/seekbzip2.py'
adding 'bx/misc/seekbzip2_tests.py'
adding 'bx/misc/seeklzop.py'
adding 'bx/misc/seeklzop_tests.py'
adding 'bx/motif/__init__.py'
adding 'bx/motif/_pwm.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/motif/pwm.py'
adding 'bx/motif/pwm_tests.py'
adding 'bx/motif/io/__init__.py'
adding 'bx/motif/io/transfac.py'
adding 'bx/motif/io/transfac_tests.py'
adding 'bx/motif/logo/__init__.py'
adding 'bx/motif/logo/template.ps'
adding 'bx/phylo/__init__.py'
adding 'bx/phylo/newick.py'
adding 'bx/phylo/newick_tests.py'
adding 'bx/phylo/phast.py'
adding 'bx/phylo/phast_tests.py'
adding 'bx/pwm/__init__.py'
adding 'bx/pwm/_position_weight_matrix.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/pwm/bed_score_aligned_pwm.py'
adding 'bx/pwm/bed_score_aligned_string.py'
adding 'bx/pwm/maf_select_motifs.py'
adding 'bx/pwm/position_weight_matrix.py'
adding 'bx/pwm/pwm_score_maf.py'
adding 'bx/pwm/pwm_score_motifs.py'
adding 'bx/pwm/pwm_score_positions.py'
adding 'bx/pwm/pwm_tests.py'
adding 'bx/seq/__init__.py'
adding 'bx/seq/_nib.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/seq/_twobit.cpython-312-arm-linux-gnueabihf.so'
adding 'bx/seq/core.py'
adding 'bx/seq/fasta.py'
adding 'bx/seq/fasta_tests.py'
adding 'bx/seq/nib.py'
adding 'bx/seq/nib_tests.py'
adding 'bx/seq/qdna.py'
adding 'bx/seq/qdna_tests.py'
adding 'bx/seq/seq.py'
adding 'bx/seq/seq_tests.py'
adding 'bx/seq/twobit.py'
adding 'bx/seq/twobit_tests.py'
adding 'bx/tabular/__init__.py'
adding 'bx/tabular/io.py'
adding 'bx_extras/__init__.py'
adding 'bx_extras/fpconst.py'
adding 'bx_extras/fpconst_tests.py'
adding 'bx_extras/lrucache.py'
adding 'bx_extras/pstat.py'
adding 'bx_extras/stats.py'
adding 'bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/align_print_template.py'
adding 'bx_python-0.13.0.data/scripts/axt_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_lav.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/bed_bigwig_profile.py'
adding 'bx_python-0.13.0.data/scripts/bed_build_windows.py'
adding 'bx_python-0.13.0.data/scripts/bed_complement.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py'
adding 'bx_python-0.13.0.data/scripts/bed_extend_to.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bed_merge_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_rand_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_subtract_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bnMapper.py'
adding 'bx_python-0.13.0.data/scripts/div_snp_table_chr.py'
adding 'bx_python-0.13.0.data/scripts/find_in_sorted_file.py'
adding 'bx_python-0.13.0.data/scripts/gene_fourfold_sites.py'
adding 'bx_python-0.13.0.data/scripts/get_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py'
adding 'bx_python-0.13.0.data/scripts/interval_count_intersections.py'
adding 'bx_python-0.13.0.data/scripts/interval_join.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/line_select.py'
adding 'bx_python-0.13.0.data/scripts/lzop_build_offset_table.py'
adding 'bx_python-0.13.0.data/scripts/mMK_bitset.py'
adding 'bx_python-0.13.0.data/scripts/maf_build_index.py'
adding 'bx_python-0.13.0.data/scripts/maf_chop.py'
adding 'bx_python-0.13.0.data/scripts/maf_chunk.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts_all.py'
adding 'bx_python-0.13.0.data/scripts/maf_count.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_regions.py'
adding 'bx_python-0.13.0.data/scripts/maf_div_sites.py'
adding 'bx_python-0.13.0.data/scripts/maf_drop_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter_max_wc.py'
adding 'bx_python-0.13.0.data/scripts/maf_gap_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_gc_content.py'
adding 'bx_python-0.13.0.data/scripts/maf_interval_alignibility.py'
adding 'bx_python-0.13.0.data/scripts/maf_limit_to_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_mask_cpg.py'
adding 'bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_identity.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_chroms.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_scores.py'
adding 'bx_python-0.13.0.data/scripts/maf_randomize.py'
adding 'bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_select.py'
adding 'bx_python-0.13.0.data/scripts/maf_shuffle_columns.py'
adding 'bx_python-0.13.0.data/scripts/maf_species_in_all_files.py'
adding 'bx_python-0.13.0.data/scripts/maf_split_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_thread_for_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2bit.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_int_seqs.py'
adding 'bx_python-0.13.0.data/scripts/maf_translate_chars.py'
adding 'bx_python-0.13.0.data/scripts/maf_truncate.py'
adding 'bx_python-0.13.0.data/scripts/maf_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/mask_quality.py'
adding 'bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_length.py'
adding 'bx_python-0.13.0.data/scripts/one_field_per_line.py'
adding 'bx_python-0.13.0.data/scripts/out_to_chain.py'
adding 'bx_python-0.13.0.data/scripts/prefix_lines.py'
adding 'bx_python-0.13.0.data/scripts/pretty_table.py'
adding 'bx_python-0.13.0.data/scripts/qv_to_bqv.py'
adding 'bx_python-0.13.0.data/scripts/random_lines.py'
adding 'bx_python-0.13.0.data/scripts/table_add_column.py'
adding 'bx_python-0.13.0.data/scripts/table_filter.py'
adding 'bx_python-0.13.0.data/scripts/tfloc_summary.py'
adding 'bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_simple.py'
adding 'bx_python-0.13.0.dist-info/LICENSE'
adding 'bx_python-0.13.0.dist-info/METADATA'
adding 'bx_python-0.13.0.dist-info/WHEEL'
adding 'bx_python-0.13.0.dist-info/top_level.txt'
adding 'bx_python-0.13.0.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built bx_python-0.13.0-cp312-cp312-linux_armv7l.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.12_bx-python/build; python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.12_bx-python/build
configfile: pytest.ini
plugins: cython-0.3.1, typeguard-4.3.0
collected 139 items
bx/align/epo_tests.py ..... [ 3%]
bx/align/lav_tests.py . [ 4%]
bx/align/maf_tests.py ........ [ 10%]
bx/align/score_tests.py ..... [ 13%]
bx/align/sitemask/sitemask_tests.py ... [ 15%]
bx/align/tools/fuse.py . [ 16%]
bx/align/tools/thread.py . [ 17%]
bx/arrays/array_tree_tests.py ...... [ 21%]
bx/bbi/bigwig_tests.py ........................... [ 41%]
bx/binned_array_tests.py .... [ 43%]
bx/bitset_tests.py .................. [ 56%]
bx/interval_index_file_tests.py ... [ 58%]
bx/intervals/cluster_tests.py ............. [ 68%]
bx/intervals/intersection_tests.py ............. [ 77%]
bx/intervals/io.py .. [ 79%]
bx/misc/bgzf_tests.py . [ 79%]
bx/misc/cdb_tests.py . [ 80%]
bx/motif/io/transfac_tests.py . [ 81%]
bx/motif/pwm_tests.py ... [ 83%]
bx/phylo/newick_tests.py ........ [ 89%]
bx/phylo/phast_tests.py . [ 89%]
bx/pwm/pwm_tests.py . [ 90%]
bx/seq/fasta_tests.py . [ 91%]
bx/seq/nib_tests.py . [ 92%]
bx/seq/qdna_tests.py . [ 92%]
bx/seq/seq_tests.py .... [ 95%]
bx/seq/twobit_tests.py ... [ 97%]
bx/wiggle_tests.py .. [ 99%]
bx_extras/fpconst_tests.py . [100%]
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
self.args, self.args_source = self._decide_args(
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 -0.0768488 -0.189129 -0.439008 -0.182524 -0.304712 -0.197935 -0.462124 -0.194633 -0.2882 -0.0570346 -0.0724456 -0.301409 0.0508425 -0.0702441 -0.182524 0.0508425 0.0508425 -0.55459 0.0508425 0.0508425 0.0508425 0.0508425 0.00460946 -0.0152047 -0.0152047 -0.095562 -0.0570346 0.0695559 0.127898 0.000206554 -0.013003 0.0167182 -0.0559341 0.0508425 0.0904709 0.101479 -0.155005 -0.0812521 0.0145168 0.0992772 0.10368 -0.155005 0.002408 -0.0911592 -0.0768488 0.013416 -0.00529754 -0.0702443 0.0013071 -0.0702442 0.0919354 -0.101144 -0.000301097\n]
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-0.901269 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.818609 0.090622 0.090622 0.090622\n]
/build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.12_bx-python/build/bx/bbi/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide
assert allclose(sd.sum_data / sd.valid_count, values)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 139 passed, 6 warnings in 22.70s =======================
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-bx/ -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/build/reproducible-path/python-bx-0.13.0'
dh_python3 --shebang=/usr/bin/python3
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_filter.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_filter_max_wc.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_select.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_species_in_all_files.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/out_to_chain.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_percent_columns_matching.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lav_to_maf.py
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I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts_all.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_intersect.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/gene_fourfold_sites.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_complement.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_count_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lav_to_axt.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/align_print_template.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/interval_join.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/div_snp_table_chr.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2bit.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lzop_build_offset_table.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_region_coverage_by_src.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_limit_to_species.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/interval_count_intersections.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_concat_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_count_by_interval.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_length.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mask_cpg.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_int_seqs.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/table_filter.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_axt.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_div_sites.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_diff_basewise_summary.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_extract_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_lav.py
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I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_chunk.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_extend_to.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_rand_intersect.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/random_lines.py
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I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_split_by_src.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/qv_to_bqv.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_drop_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/prefix_lines.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_chop.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_bigwig_profile.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_coverage.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_covered_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_percent_identity.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_print_chroms.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/find_in_sorted_file.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_gc_content.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_build_windows.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/pretty_table.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/get_scores_in_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_build_index.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_array_tree.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/table_add_column.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_shuffle_columns.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_word_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_count.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_binned_array.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_subtract_basewise.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_randomize.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_truncate.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_intervals_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bnMapper.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_coverage_by_interval.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_translate_chars.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/line_select.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_gap_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_print_scores.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_simple.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/tfloc_summary.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/one_field_per_line.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_maf.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/mask_quality.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_thread_for_species.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_covered_regions.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mapping_word_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_merge_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_intersect_basewise.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py
dh_numpy3
make[1]: Leaving directory '/build/reproducible-path/python-bx-0.13.0'
dh_installsystemduser -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-bx' in '../python3-bx_0.13.0-1_armhf.deb'.
dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.13.0-1_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../python-bx_0.13.0-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../python-bx_0.13.0-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/13852/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/13852 and its subdirectories
I: Current time: Sun Oct 20 01:17:16 +14 2024
I: pbuilder-time-stamp: 1729336636