I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 12 16:36:11 -12 2024 I: pbuilder-time-stamp: 1734064571 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-csb_1.2.5+dfsg-10.dsc] I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-10.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 9 16:03:46 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-csb_1.2.5+dfsg-10.dsc: no acceptable signature found dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch dpkg-source: info: applying avoid-multiple-namespace.patch dpkg-source: info: applying python3-syntax.patch dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5961/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='2dddfa5bf0de4bfc83babf826b19835d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5961' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MPm3vwzm/pbuilderrc_epBL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MPm3vwzm/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5961/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch shared-mime-info wget xdg-user-dirs 0 packages upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 93.5 MB of archives. After unpacking 381 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.8-2 [802 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.8-2 [1811 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.8-2 [1821 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.8-2 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.1-2 [844 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.1-2 [1838 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-3 [263 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b2 [25.0 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b2 [46.5 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b2 [16.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.15-1 [697 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf fonts-lyx all 2.4.2.1-1 [190 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.3-2 [1327 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.1.0-1 [418 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.0-2+b4 [179 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1846 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.4.0-0.1+b1 [110 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.4.0-0.1+b1 [120 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.1-2 [740 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.7-1 [1052 B] Get: 117 http://deb.debian.org/debian unstable/main armhf python3-appdirs all 1.4.4-4 [12.5 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf python3-attr all 24.2.0-1 [68.4 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf python3-brotli armhf 1.1.0-2+b6 [302 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf python3-contourpy armhf 1.3.1-1 [217 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 123 http://deb.debian.org/debian unstable/main armhf python3-dateutil all 2.9.0-3 [79.3 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf python3-fs all 2.4.16-5 [95.1 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf python3-lxml armhf 5.3.0-1+b1 [1468 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf python3-lz4 armhf 4.4.0+dfsg-1 [23.9 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.14.1-3 [17.8 MB] Get: 130 http://deb.debian.org/debian unstable/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf python3-sympy all 1.13.3-1 [4147 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf python3-fonttools armhf 4.55.0-3 [1529 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf python3-kiwisolver armhf 1.4.7-2+b1 [64.9 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 10.4.0-1+b1 [478 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf python3.12-tk armhf 3.12.8-2 [109 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf python3.13-tk armhf 3.13.1-2 [99.7 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf python3-tk armhf 3.12.7-1 [9444 B] Get: 140 http://deb.debian.org/debian unstable/main armhf python3-pil.imagetk armhf 10.4.0-1+b1 [79.3 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf python3-matplotlib armhf 3.8.3-3+b1 [5579 kB] Fetched 93.5 MB in 19s (4958 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-2_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-2_armhf.deb ... Unpacking python3.12-minimal (3.12.8-2) ... Setting up libpython3.12-minimal:armhf (3.12.8-2) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_armhf.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-2_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.8-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-2_armhf.deb ... Unpacking python3.12 (3.12.8-2) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21063 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_armhf.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:armhf. Preparing to unpack .../001-libpython3.13-minimal_3.13.1-2_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.1-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.1-2_armhf.deb ... Unpacking python3.13-minimal (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-6_armhf.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-12_armhf.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... 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Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../031-libxrender1_1%3a0.9.10-1.1+b2_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1+b2) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../032-libxft2_2.3.6-1+b2_armhf.deb ... Unpacking libxft2:armhf (2.3.6-1+b2) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../033-libxext6_2%3a1.3.4-1+b2_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../034-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../035-libxss1_1%3a1.2.3-1+b2_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../036-libtk8.6_8.6.15-1_armhf.deb ... Unpacking libtk8.6:armhf (8.6.15-1) ... 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Selecting previously unselected package gettext. Preparing to unpack .../049-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../050-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../051-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../052-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../053-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../054-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../055-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../056-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../057-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../058-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../059-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. 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Setting up libxdmcp6:armhf (1:1.1.5-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libxcb1:armhf (1.17.0-2+b1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up liblerc4:armhf (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:armhf (2020.2-6+b2) ... Setting up libcom-err2:armhf (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:armhf (2.1-6.1+b2) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 13 04:38:11 UTC 2024. Universal Time is now: Fri Dec 13 04:38:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpython3.13-minimal:armhf (3.13.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.82.3-2) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libfribidi0:armhf (1.0.16-1) ... Setting up libimagequant0:armhf (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-3) ... Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:armhf (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libopenjp2-7:armhf (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-2) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:armhf (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1+b1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libxslt1.1:armhf (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:armhf (10.1.0-1) ... Setting up libxss1:armhf (1:1.2.3-1+b2) ... Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ... Setting up libpython3.13-stdlib:armhf (3.13.1-2) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b2) ... Setting up libxft2:armhf (2.3.6-1+b2) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:armhf (8.6.15-1) ... Setting up python3.12-tk (3.12.8-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.1-2) ... Setting up libraqm0:armhf (0.10.2-1) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:armhf (3.12.8-2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.8-2) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pil:armhf (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-lxml:armhf (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-tk:armhf (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:armhf (10.4.0-1+b1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.1-1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.bio.nmr.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.bio.nmr.resources' to be distributed and are already explicitly excluding 'csb.bio.nmr.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.test.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.test.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.test.data' to be distributed and are already explicitly excluding 'csb.test.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.bio.nmr.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.bio.nmr.resources' to be distributed and are already explicitly excluding 'csb.bio.nmr.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.test.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.test.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.test.data' to be distributed and are already explicitly excluding 'csb.test.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:311: set -e; \ cd /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build; \ PYTHONPATH=/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build PYTHONWARNINGS=d python3.13 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgny2v7u1' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpute9b7q8' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi8xuvpym' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplc2b0fer' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphfaiz4m0' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfe1hvilx' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) r526 ... ok testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) @see: [CSB 0000058] ... ok testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) @see: [CSB 0000056] ... ok testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk3rg43uk' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) @see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8dzp1fym' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) @see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) @see: [CSB 0000052] ... ok testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing) @see: [CSB 0000045] ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkocftm5r' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe5d7rh4b' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcpkmv05l' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgs1rk0jq' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8ru66a0l' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0uq28hpk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps9veuroo' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7o199u6p' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9_h6ktpi' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpojsg8o8_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdrep4j6z' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_tjiw60t' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6a09lqa3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyoda6kq9' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp15fro5m5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpovbgm1mz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1x22mzao' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) @see: [CSB 0000122] ... ok testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) @see: [CSB 0000030] ... ok testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) @see: [CSB 0000029] ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdb093jym' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_pha74ja' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) @see: [CSB 0000132] ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok ====================================================================== ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest self.assertNotEquals(id(obj), id(copy)) ^^^^^^^^^^^^^^^^^^^^ AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 899, in testFiveReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (85,) (75,) ====================================================================== ERROR: testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 909, in testFiveReplicasOffset assert(self._assertIdenticalProjTrajs(samples, swap_interval, first_swap)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (103,) (73,) ====================================================================== ERROR: testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 889, in testFourReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (125,) (105,) ====================================================================== ERROR: testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 879, in testTwoReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (195,) (305,) ====================================================================== FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit with self.assertRaises(RuntimeError): ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ AssertionError: RuntimeError not raised ====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison self.assertFalse(self.enum.C == 66) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^ AssertionError: True is not false ---------------------------------------------------------------------- Ran 697 tests in 261.062s FAILED (failures=2, errors=5, skipped=6) I: pybuild base:311: set -e; \ cd /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build; \ PYTHONPATH=/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build PYTHONWARNINGS=d python3.12 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgg0zaepd' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1tsd_7er' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpve_g996k' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9r56wbea' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp37g79vzw' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeznkttjb' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) r526 ... ok testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) @see: [CSB 0000058] ... ok testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) @see: [CSB 0000056] ... ok testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpirh4at4t' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) @see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm3khi_wj' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) @see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) @see: [CSB 0000052] ... ok testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing) @see: [CSB 0000045] ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8q8jb7lu' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmwmg5mlg' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj306_9vx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8cy632_n' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgxmrk15g' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmrvpgax1' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpat9pc63m' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0m3lqfbn' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv773mzqt' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd_cocbhw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptnugh0qb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1e3i74en' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphnctjvsx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpr4gt86yh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfebq60lt' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe0aour5h' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp50bdgvwf' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) @see: [CSB 0000122] ... ok testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) @see: [CSB 0000030] ... ok testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) @see: [CSB 0000029] ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt8a6qoq5' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpp3qt17zr' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) @see: [CSB 0000132] ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok ====================================================================== ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest self.assertNotEquals(id(obj), id(copy)) ^^^^^^^^^^^^^^^^^^^^ AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 899, in testFiveReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (85,) (75,) ====================================================================== ERROR: testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 909, in testFiveReplicasOffset assert(self._assertIdenticalProjTrajs(samples, swap_interval, first_swap)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (103,) (73,) ====================================================================== ERROR: testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 889, in testFourReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (125,) (105,) ====================================================================== ERROR: testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 879, in testTwoReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (195,) (305,) ====================================================================== FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit with self.assertRaises(RuntimeError): ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AssertionError: RuntimeError not raised ====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison self.assertFalse(self.enum.C == 66) AssertionError: True is not false ---------------------------------------------------------------------- Ran 697 tests in 280.201s FAILED (failures=2, errors=5, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.bio.nmr.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.bio.nmr.resources' to be distributed and are already explicitly excluding 'csb.bio.nmr.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.test.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.test.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.test.data' to be distributed and are already explicitly excluding 'csb.test.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) Warning: 'classifiers' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.bio.nmr.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.bio.nmr.resources' to be distributed and are already explicitly excluding 'csb.bio.nmr.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'csb.test.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'csb.test.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'csb.test.data' to be distributed and are already explicitly excluding 'csb.test.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/tsv.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/cs.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/whatif.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/clans.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/hhpred.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/procheck.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/noe.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/dssp.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/mrc.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/tsv.py to tsv.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/plots.py to plots.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/app.py to app.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/integrators.py to integrators.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/psipred.py to psipred.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/mrc.py to mrc.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/vasco.py to vasco.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/cs.py to cs.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/svg.py to svg.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/dssp.py to dssp.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py to whatif.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py to procheck.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/noe.py to noe.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/clans.py to clans.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/ars.py to ars.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/rand.py to rand.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/maxent.py to maxent.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfite.py to bfite.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/precision.py to precision.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfit.py to bfit.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/csfrag.py to csfrag.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/helloworld.py to helloworld.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/embd.py to embd.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/promix.py to promix.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/wham.py to wham.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/build.py to build.cpython-312.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-10_all.deb'. dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-10_armhf.buildinfo dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-10_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5961 and its subdirectories I: Current time: Thu Dec 12 16:51:15 -12 2024 I: pbuilder-time-stamp: 1734065475