I: pbuilder: network access will be disabled during build
I: Current time: Mon Dec 23 09:09:32 -12 2024
I: pbuilder-time-stamp: 1734988172
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-cutadapt_4.7-2.dsc]
I: copying [./python-cutadapt_4.7.orig.tar.gz]
I: copying [./python-cutadapt_4.7-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Mar 27 09:02:10 2024
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7
dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz
dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/20221/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='2e5543cc849b47f996b712f5f8167baa'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='20221'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LbcPBOm7/pbuilderrc_U070 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LbcPBOm7/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc'
SUDO_GID='110'
SUDO_UID='103'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt64z 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/20221/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19681 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however:
Package libpython3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev:any.
pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
Package pybuild-plugin-pyproject is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however:
Package python3-pytest-mock is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however:
Package python3-pytest-timeout is not installed.
pbuilder-satisfydepends-dummy depends on python3-xopen; however:
Package python3-xopen is not installed.
pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however:
Package python3-dnaio is not installed.
pbuilder-satisfydepends-dummy depends on cython3:native.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget
0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
Need to get 49.5 MB of archives. After unpacking 187 MB will be used.
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Get: 4 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB]
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Get: 80 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.2.0-1 [11.7 kB]
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Get: 95 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
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Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-installer (0.7.0+dfsg1-3) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up python3-build (1.2.2-1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up libpython3-dev:armhf (3.12.7-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-all (3.12.7-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up libpython3-all-dev:armhf (3.12.7-1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.12.7-1) ...
Setting up python3-pytest-mock (3.14.0-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-all-dev (3.12.7-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up python3-pytest-timeout (2.3.1-1) ...
Setting up python3-setuptools-scm (8.1.0-1) ...
Setting up python3-xopen (1.7.0-2) ...
Setting up python3-dnaio (1.2.3-1) ...
Setting up dh-python (6.20241217) ...
Setting up pybuild-plugin-pyproject (6.20241217) ...
Processing triggers for libc-bin (2.40-4) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes
dpkg-buildpackage: info: source package python-cutadapt
dpkg-buildpackage: info: source version 4.7-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/utils.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/align.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/log.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/_match_tables.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/parser.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/json.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/cli.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/statistics.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/__init__.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/pipeline.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/adapters.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/report.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/tokenizer.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/steps.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/files.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/__main__.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/_version.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/predicates.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/runners.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/modifiers.py -> build/lib.linux-armv7l-cpython-313/cutadapt
running egg_info
creating src/cutadapt.egg-info
writing src/cutadapt.egg-info/PKG-INFO
writing dependency_links to src/cutadapt.egg-info/dependency_links.txt
writing entry points to src/cutadapt.egg-info/entry_points.txt
writing requirements to src/cutadapt.egg-info/requires.txt
writing top-level names to src/cutadapt.egg-info/top_level.txt
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'CITATION'
warning: no files found matching 'src/cutadapt/*.c'
adding license file 'LICENSE'
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
copying src/cutadapt/_align.pyi -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/info.pyi -> build/lib.linux-armv7l-cpython-313/cutadapt
copying src/cutadapt/qualtrim.pyi -> build/lib.linux-armv7l-cpython-313/cutadapt
running build_ext
Compiling src/cutadapt/_align.pyx because it changed.
[1/1] Cythonizing src/cutadapt/_align.pyx
building 'cutadapt._align' extension
creating build/temp.linux-armv7l-cpython-313/src/cutadapt
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-armv7l-cpython-313/src/cutadapt/_align.o
In function '__pyx_pf_8cutadapt_6_align_7Aligner_12locate',
inlined from '__pyx_pw_8cutadapt_6_align_7Aligner_13locate' at src/cutadapt/_align.c:6596:13:
src/cutadapt/_align.c:7568:10: warning: '__pyx_v_origin' may be used uninitialized [-Wmaybe-uninitialized]
7568 | if (!__pyx_t_13) {
| ^
src/cutadapt/_align.c: In function '__pyx_pw_8cutadapt_6_align_7Aligner_13locate':
src/cutadapt/_align.c:6633:7: note: '__pyx_v_origin' was declared here
6633 | int __pyx_v_origin;
| ^~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/src/cutadapt/_align.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/cutadapt/_align.cpython-313-arm-linux-gnueabihf.so
Compiling src/cutadapt/qualtrim.pyx because it changed.
[1/1] Cythonizing src/cutadapt/qualtrim.pyx
building 'cutadapt.qualtrim' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-armv7l-cpython-313/src/cutadapt/qualtrim.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/cutadapt/qualtrim.cpython-313-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling src/cutadapt/info.pyx because it changed.
[1/1] Cythonizing src/cutadapt/info.pyx
building 'cutadapt.info' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-armv7l-cpython-313/src/cutadapt/info.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/src/cutadapt/info.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/cutadapt/info.cpython-313-arm-linux-gnueabihf.so
Compiling src/cutadapt/_kmer_finder.pyx because it changed.
[1/1] Cythonizing src/cutadapt/_kmer_finder.pyx
building 'cutadapt._kmer_finder' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-armv7l-cpython-313/src/cutadapt/_kmer_finder.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/cutadapt/_kmer_finder.cpython-313-arm-linux-gnueabihf.so
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/utils.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/align.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/log.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/parser.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/json.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/info.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/cli.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/statistics.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/adapters.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_align.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_kmer_finder.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/report.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/steps.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/files.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/__main__.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/_version.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/predicates.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/info.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/qualtrim.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/runners.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-armv7l/wheel/./cutadapt
running install_egg_info
Copying src/cutadapt.egg-info to build/bdist.linux-armv7l/wheel/./cutadapt-4.7.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/cutadapt-4.7.dist-info/WHEEL
creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-1wjz6qsm/cutadapt-4.7-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'cutadapt/__init__.py'
adding 'cutadapt/__main__.py'
adding 'cutadapt/_align.cpython-313-arm-linux-gnueabihf.so'
adding 'cutadapt/_align.pyi'
adding 'cutadapt/_kmer_finder.cpython-313-arm-linux-gnueabihf.so'
adding 'cutadapt/_kmer_finder.pyi'
adding 'cutadapt/_match_tables.py'
adding 'cutadapt/_version.py'
adding 'cutadapt/adapters.py'
adding 'cutadapt/align.py'
adding 'cutadapt/cli.py'
adding 'cutadapt/files.py'
adding 'cutadapt/info.cpython-313-arm-linux-gnueabihf.so'
adding 'cutadapt/info.pyi'
adding 'cutadapt/json.py'
adding 'cutadapt/kmer_heuristic.py'
adding 'cutadapt/log.py'
adding 'cutadapt/modifiers.py'
adding 'cutadapt/parser.py'
adding 'cutadapt/pipeline.py'
adding 'cutadapt/predicates.py'
adding 'cutadapt/qualtrim.cpython-313-arm-linux-gnueabihf.so'
adding 'cutadapt/qualtrim.pyi'
adding 'cutadapt/report.py'
adding 'cutadapt/runners.py'
adding 'cutadapt/statistics.py'
adding 'cutadapt/steps.py'
adding 'cutadapt/tokenizer.py'
adding 'cutadapt/utils.py'
adding 'cutadapt-4.7.dist-info/LICENSE'
adding 'cutadapt-4.7.dist-info/METADATA'
adding 'cutadapt-4.7.dist-info/WHEEL'
adding 'cutadapt-4.7.dist-info/entry_points.txt'
adding 'cutadapt-4.7.dist-info/top_level.txt'
adding 'cutadapt-4.7.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built cutadapt-4.7-cp313-cp313-linux_armv7l.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/utils.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/align.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/log.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/_match_tables.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/parser.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/json.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/cli.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/statistics.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/__init__.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/pipeline.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/adapters.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/report.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/tokenizer.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/steps.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/files.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/__main__.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/_version.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/predicates.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/runners.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/modifiers.py -> build/lib.linux-armv7l-cpython-312/cutadapt
running egg_info
writing src/cutadapt.egg-info/PKG-INFO
writing dependency_links to src/cutadapt.egg-info/dependency_links.txt
writing entry points to src/cutadapt.egg-info/entry_points.txt
writing requirements to src/cutadapt.egg-info/requires.txt
writing top-level names to src/cutadapt.egg-info/top_level.txt
reading manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'CITATION'
adding license file 'LICENSE'
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
copying src/cutadapt/_align.pyi -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/info.pyi -> build/lib.linux-armv7l-cpython-312/cutadapt
copying src/cutadapt/qualtrim.pyi -> build/lib.linux-armv7l-cpython-312/cutadapt
running build_ext
building 'cutadapt._align' extension
creating build/temp.linux-armv7l-cpython-312/src/cutadapt
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_align.c -o build/temp.linux-armv7l-cpython-312/src/cutadapt/_align.o
In function '__pyx_pf_8cutadapt_6_align_7Aligner_12locate',
inlined from '__pyx_pw_8cutadapt_6_align_7Aligner_13locate' at src/cutadapt/_align.c:6596:13:
src/cutadapt/_align.c:7568:10: warning: '__pyx_v_origin' may be used uninitialized [-Wmaybe-uninitialized]
7568 | if (!__pyx_t_13) {
| ^
src/cutadapt/_align.c: In function '__pyx_pw_8cutadapt_6_align_7Aligner_13locate':
src/cutadapt/_align.c:6633:7: note: '__pyx_v_origin' was declared here
6633 | int __pyx_v_origin;
| ^~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/cutadapt/_align.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/cutadapt/_align.cpython-312-arm-linux-gnueabihf.so
building 'cutadapt.qualtrim' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/qualtrim.c -o build/temp.linux-armv7l-cpython-312/src/cutadapt/qualtrim.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/cutadapt/qualtrim.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/cutadapt/qualtrim.cpython-312-arm-linux-gnueabihf.so
building 'cutadapt.info' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/info.c -o build/temp.linux-armv7l-cpython-312/src/cutadapt/info.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/cutadapt/info.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/cutadapt/info.cpython-312-arm-linux-gnueabihf.so
building 'cutadapt._kmer_finder' extension
arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-armv7l-cpython-312/src/cutadapt/_kmer_finder.o
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/cutadapt/_kmer_finder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/cutadapt/_kmer_finder.cpython-312-arm-linux-gnueabihf.so
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/utils.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/align.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/qualtrim.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_kmer_finder.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/log.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/info.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_match_tables.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/parser.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/json.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/cli.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/statistics.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_align.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/pipeline.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/adapters.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_kmer_finder.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/qualtrim.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_align.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/report.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/tokenizer.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/steps.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/files.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/__main__.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/_version.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/predicates.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/info.pyi -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/runners.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/kmer_heuristic.py -> build/bdist.linux-armv7l/wheel/./cutadapt
copying build/lib.linux-armv7l-cpython-312/cutadapt/modifiers.py -> build/bdist.linux-armv7l/wheel/./cutadapt
running install_egg_info
Copying src/cutadapt.egg-info to build/bdist.linux-armv7l/wheel/./cutadapt-4.7.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/cutadapt-4.7.dist-info/WHEEL
creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/.tmp-o7cyufsd/cutadapt-4.7-cp312-cp312-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'cutadapt/__init__.py'
adding 'cutadapt/__main__.py'
adding 'cutadapt/_align.cpython-312-arm-linux-gnueabihf.so'
adding 'cutadapt/_align.pyi'
adding 'cutadapt/_kmer_finder.cpython-312-arm-linux-gnueabihf.so'
adding 'cutadapt/_kmer_finder.pyi'
adding 'cutadapt/_match_tables.py'
adding 'cutadapt/_version.py'
adding 'cutadapt/adapters.py'
adding 'cutadapt/align.py'
adding 'cutadapt/cli.py'
adding 'cutadapt/files.py'
adding 'cutadapt/info.cpython-312-arm-linux-gnueabihf.so'
adding 'cutadapt/info.pyi'
adding 'cutadapt/json.py'
adding 'cutadapt/kmer_heuristic.py'
adding 'cutadapt/log.py'
adding 'cutadapt/modifiers.py'
adding 'cutadapt/parser.py'
adding 'cutadapt/pipeline.py'
adding 'cutadapt/predicates.py'
adding 'cutadapt/qualtrim.cpython-312-arm-linux-gnueabihf.so'
adding 'cutadapt/qualtrim.pyi'
adding 'cutadapt/report.py'
adding 'cutadapt/runners.py'
adding 'cutadapt/statistics.py'
adding 'cutadapt/steps.py'
adding 'cutadapt/tokenizer.py'
adding 'cutadapt/utils.py'
adding 'cutadapt-4.7.dist-info/LICENSE'
adding 'cutadapt-4.7.dist-info/METADATA'
adding 'cutadapt-4.7.dist-info/WHEEL'
adding 'cutadapt-4.7.dist-info/entry_points.txt'
adding 'cutadapt-4.7.dist-info/top_level.txt'
adding 'cutadapt-4.7.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built cutadapt-4.7-cp312-cp312-linux_armv7l.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process'
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build
configfile: pyproject.toml
testpaths: tests
plugins: timeout-2.3.1, typeguard-4.4.1, mock-3.14.0
collected 669 items / 1 deselected / 668 selected
tests/test_adapters.py ......................................... [ 6%]
tests/test_align.py .................................................... [ 13%]
... [ 14%]
tests/test_api.py ...... [ 15%]
tests/test_command.py ........... [ 16%]
tests/test_commandline.py .............................................. [ 23%]
........................................................................ [ 34%]
.............................................................. [ 43%]
tests/test_files.py ......... [ 45%]
tests/test_kmer_finder.py .................... [ 48%]
tests/test_kmer_heuristic.py ............... [ 50%]
tests/test_main.py .... [ 51%]
tests/test_modifiers.py ....................................... [ 56%]
tests/test_paired.py ................................................... [ 64%]
........................................................................ [ 75%]
....................................................... [ 83%]
tests/test_parser.py ................................................. [ 90%]
tests/test_predicates.py ................. [ 93%]
tests/test_qualtrim.py ............................ [ 97%]
tests/test_report.py .. [ 97%]
tests/test_stats.py ... [ 98%]
tests/test_testutils.py .. [ 98%]
tests/test_tokenizer.py .. [ 98%]
tests/test_trim.py ... [ 99%]
tests/test_utils.py .... [100%]
====================== 668 passed, 1 deselected in 44.84s ======================
I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/build; python3.12 -m pytest -k 'not test_run_cutadapt_process'
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/build
configfile: pyproject.toml
testpaths: tests
plugins: timeout-2.3.1, typeguard-4.4.1, mock-3.14.0
collected 669 items / 1 deselected / 668 selected
tests/test_adapters.py ......................................... [ 6%]
tests/test_align.py .................................................... [ 13%]
... [ 14%]
tests/test_api.py ...... [ 15%]
tests/test_command.py ........... [ 16%]
tests/test_commandline.py .............................................. [ 23%]
........................................................................ [ 34%]
.............................................................. [ 43%]
tests/test_files.py ......... [ 45%]
tests/test_kmer_finder.py .................... [ 48%]
tests/test_kmer_heuristic.py ............... [ 50%]
tests/test_main.py .... [ 51%]
tests/test_modifiers.py ....................................... [ 56%]
tests/test_paired.py ................................................... [ 64%]
........................................................................ [ 75%]
....................................................... [ 83%]
tests/test_parser.py ................................................. [ 90%]
tests/test_predicates.py ................. [ 93%]
tests/test_qualtrim.py ............................ [ 97%]
tests/test_report.py .. [ 97%]
tests/test_stats.py ... [ 98%]
tests/test_testutils.py .. [ 98%]
tests/test_tokenizer.py .. [ 98%]
tests/test_trim.py ... [ 99%]
tests/test_utils.py .... [100%]
====================== 668 passed, 1 deselected in 43.24s ======================
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
debian/rules execute_after_dh_install
make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7'
mkdir -p debian/cutadapt/usr/bin
mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/
make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'.
dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_armhf.deb'.
dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_armhf.buildinfo
dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/20221 and its subdirectories
I: Current time: Mon Dec 23 09:16:10 -12 2024
I: pbuilder-time-stamp: 1734988570