I: pbuilder: network access will be disabled during build
I: Current time: Thu Oct 24 15:17:37 -12 2024
I: pbuilder-time-stamp: 1729826257
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-pyfaidx_0.8.1.3-1.dsc]
I: copying [./python-pyfaidx_0.8.1.3.orig.tar.gz]
I: copying [./python-pyfaidx_0.8.1.3-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Oct 16 19:20:44 2024
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found
dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.8.1.3
dpkg-source: info: unpacking python-pyfaidx_0.8.1.3.orig.tar.gz
dpkg-source: info: unpacking python-pyfaidx_0.8.1.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying test-locale-to-c.patch
dpkg-source: info: applying remove-ignore-docstring.patch
dpkg-source: info: applying manual-layout.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/13542/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='50d5918b15384ad4a713b54237cae5fc'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='13542'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3yYY9PBn/pbuilderrc_bPAt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3yYY9PBn/b1 --logfile b1/build.log python-pyfaidx_0.8.1.3-1.dsc'
SUDO_GID='110'
SUDO_UID='103'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt32z 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/13542/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-coverage, python3-setuptools, python3-setuptools-scm, python3-biopython, python3-importlib-metadata, python3-numpy, pybuild-plugin-pyproject, python3-pytest, samtools, tabix
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19667 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-coverage; however:
Package python3-coverage is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however:
Package python3-setuptools-scm is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-importlib-metadata; however:
Package python3-importlib-metadata is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
Package pybuild-plugin-pyproject is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on samtools; however:
Package samtools is not installed.
pbuilder-satisfydepends-dummy depends on tabix; however:
Package tabix is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-freetype{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs
0 packages upgraded, 147 newly installed, 0 to remove and 0 not upgraded.
Need to get 60.1 MB of archives. After unpacking 192 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-1 [800 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-1 [1809 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-1 [1820 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-1 [671 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B]
Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.6-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf sgml-base all 1.31 [15.4 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB]
Get: 30 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB]
Get: 31 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB]
Get: 32 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 33 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 34 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 35 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 36 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 37 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 43 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 44 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 45 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 46 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 47 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB]
Get: 48 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB]
Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.20.2-1 [10.3 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf python3-importlib-metadata all 8.5.0-1 [21.0 kB]
Get: 58 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.3.0-1 [36.5 kB]
Get: 59 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 64 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB]
Get: 65 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB]
Get: 66 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 67 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get: 68 http://deb.debian.org/debian unstable/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB]
Get: 69 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB]
Get: 70 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB]
Get: 71 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB]
Get: 72 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB]
Get: 73 http://deb.debian.org/debian unstable/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 74 http://deb.debian.org/debian unstable/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB]
Get: 75 http://deb.debian.org/debian unstable/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 76 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB]
Get: 77 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB]
Get: 78 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB]
Get: 79 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB]
Get: 80 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB]
Get: 82 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2 [140 kB]
Get: 83 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get: 84 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB]
Get: 85 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB]
Get: 86 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB]
Get: 87 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB]
Get: 88 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB]
Get: 89 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.2-2 [443 kB]
Get: 90 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 91 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 92 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB]
Get: 93 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB]
Get: 94 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.4.0-1 [55.1 kB]
Get: 95 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB]
Get: 96 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB]
Get: 97 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB]
Get: 98 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB]
Get: 99 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 100 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.10.1-2 [308 kB]
Get: 101 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB]
Get: 102 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB]
Get: 103 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-7 [262 kB]
Get: 104 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.2-1 [1326 kB]
Get: 105 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB]
Get: 106 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.0.1-1 [418 kB]
Get: 107 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB]
Get: 108 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB]
Get: 109 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB]
Get: 110 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB]
Get: 111 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB]
Get: 112 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB]
Get: 113 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB]
Get: 114 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB]
Get: 115 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.5-2 [81.8 kB]
Get: 116 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB]
Get: 117 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB]
Get: 118 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB]
Get: 119 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB]
Get: 120 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB]
Get: 121 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB]
Get: 122 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB]
Get: 123 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.1-1 [45.8 kB]
Get: 124 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get: 125 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get: 126 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.44.0-2 [53.4 kB]
Get: 127 http://deb.debian.org/debian unstable/main armhf python3-build all 1.2.2-1 [36.0 kB]
Get: 128 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get: 129 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20241024 [11.4 kB]
Get: 130 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.6-1 [1040 B]
Get: 131 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB]
Get: 132 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get: 133 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 10.4.0-1 [465 kB]
Get: 134 http://deb.debian.org/debian unstable/main armhf python3-cairo armhf 1.26.1-2 [108 kB]
Get: 135 http://deb.debian.org/debian unstable/main armhf python3-freetype all 2.5.1-1 [89.3 kB]
Get: 136 http://deb.debian.org/debian unstable/main armhf python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 137 http://deb.debian.org/debian unstable/main armhf python3-reportlab all 4.2.5-1 [1117 kB]
Get: 138 http://deb.debian.org/debian unstable/main armhf xml-core all 0.19 [20.1 kB]
Get: 139 http://deb.debian.org/debian unstable/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get: 140 http://deb.debian.org/debian unstable/main armhf python3-biopython armhf 1.84+dfsg-3 [1618 kB]
Get: 141 http://deb.debian.org/debian unstable/main armhf python3-coverage armhf 7.6.0+dfsg1-2 [174 kB]
Get: 142 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get: 143 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 144 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB]
Get: 145 http://deb.debian.org/debian unstable/main armhf python3-setuptools-scm all 8.1.0-1 [40.5 kB]
Get: 146 http://deb.debian.org/debian unstable/main armhf samtools armhf 1.20-3 [620 kB]
Get: 147 http://deb.debian.org/debian unstable/main armhf tabix armhf 1.20+ds-1 [415 kB]
Fetched 60.1 MB in 1s (75.9 MB/s)
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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes
dpkg-buildpackage: info: source package python-pyfaidx
dpkg-buildpackage: info: source version 0.8.1.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
dh_auto_clean
rm -f .coverage
rm -f tests/data/genes.fasta.gz
rm -rf pyfaidx.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib/pyfaidx
copying pyfaidx/__init__.py -> build/lib/pyfaidx
copying pyfaidx/cli.py -> build/lib/pyfaidx
running egg_info
creating pyfaidx.egg-info
writing pyfaidx.egg-info/PKG-INFO
writing dependency_links to pyfaidx.egg-info/dependency_links.txt
writing entry points to pyfaidx.egg-info/entry_points.txt
writing requirements to pyfaidx.egg-info/requires.txt
writing top-level names to pyfaidx.egg-info/top_level.txt
writing manifest file 'pyfaidx.egg-info/SOURCES.txt'
reading manifest file 'pyfaidx.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'docs/build/html/*'
adding license file 'LICENSE'
writing manifest file 'pyfaidx.egg-info/SOURCES.txt'
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/pyfaidx
copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfaidx
copying build/lib/pyfaidx/cli.py -> build/bdist.linux-armv7l/wheel/./pyfaidx
running install_egg_info
Copying pyfaidx.egg-info to build/bdist.linux-armv7l/wheel/./pyfaidx-0.8.1.3.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL
creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-vsc4boy0/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'pyfaidx/__init__.py'
adding 'pyfaidx/cli.py'
adding 'pyfaidx-0.8.1.3.dist-info/LICENSE'
adding 'pyfaidx-0.8.1.3.dist-info/METADATA'
adding 'pyfaidx-0.8.1.3.dist-info/WHEEL'
adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt'
adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt'
adding 'pyfaidx-0.8.1.3.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built pyfaidx-0.8.1.3-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz
dh_auto_test
I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build; python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 136 items
tests/test_FastaRecord.py ..... [ 3%]
tests/test_FastaRecord_iter.py ... [ 5%]
tests/test_FastaVariant.py ssssss [ 10%]
tests/test_Fasta_bgzip.py x.....x..................... [ 30%]
tests/test_Fasta_integer_index.py .. [ 32%]
tests/test_Fasta_synchronization.py ... [ 34%]
tests/test_Path.py .. [ 36%]
tests/test_bio_seqio.py ... [ 38%]
tests/test_faidx.py ......... [ 44%]
tests/test_feature_bounds_check.py ........................ [ 62%]
tests/test_feature_default_seq.py . [ 63%]
tests/test_feature_indexing.py ............... [ 74%]
tests/test_feature_key_function.py ...... [ 78%]
tests/test_feature_read_ahead_buffer.py ..... [ 82%]
tests/test_feature_sequence_as_raw.py ..... [ 86%]
tests/test_feature_spliced_seq.py .. [ 87%]
tests/test_feature_split_char.py .... [ 90%]
tests/test_fsspec.py ssss [ 93%]
tests/test_sequence_class.py ......... [100%]
============ 124 passed, 10 skipped, 2 xfailed in 93.59s (0:01:33) =============
rm tests/data/genes.fasta.gz
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
dh_compress --exclude=gz.tbi
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3'
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.8.1.3-1_all.deb'.
dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.8.1.3-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.8.1.3-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../python-pyfaidx_0.8.1.3-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/13542 and its subdirectories
I: Current time: Thu Oct 24 15:21:56 -12 2024
I: pbuilder-time-stamp: 1729826516