I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 14 00:16:23 -12 2026 I: pbuilder-time-stamp: 1771071383 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [flye_2.9.5+dfsg-1.dsc] I: copying [./flye_2.9.5+dfsg.orig.tar.xz] I: copying [./flye_2.9.5+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./flye_2.9.5+dfsg-1.dsc: unsupported subcommand dpkg-source: info: extracting flye in flye-2.9.5+dfsg dpkg-source: info: unpacking flye_2.9.5+dfsg.orig.tar.xz dpkg-source: info: unpacking flye_2.9.5+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying cppflags.patch dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8947/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='cfbc516db9d643bab8ac8d999b69123e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8947' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7RRqnaqS/pbuilderrc_Y1lC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7RRqnaqS/b1 --logfile b1/build.log flye_2.9.5+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8947/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, liblemon-dev, libminimap2-dev, samtools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19835 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on liblemon-dev; however: Package liblemon-dev is not installed. pbuilder-satisfydepends-dummy depends on libminimap2-dev; however: Package libminimap2-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libbrotli1{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libglpk40{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblemon-dev{a} liblemon1.3.1{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libminimap2-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsuitesparseconfig7{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After unpacking 133 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.1-3 [858 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.1-3 [2264 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-5 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.1-3 [1980 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-4 [201 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.3-1 [96.1 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-4 [723 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.23 [90.6 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 36 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-4 [1632 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 debhelper all 13.23 [919 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 51 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libsuitesparseconfig7 i386 1:7.8.3+dfsg-2 [24.0 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libamd3 i386 1:7.8.3+dfsg-2 [43.5 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libcolamd3 i386 1:7.8.3+dfsg-2 [35.6 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-3+b3 [51.1 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.8-2 [1451 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 69 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.19+dfsg-1 [200 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.11.1-1 [404 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libltdl7 i386 2.5.4-2 [417 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libglpk40 i386 5.0-1+b2 [422 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.20+ds-2 [500 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 liblemon1.3.1 i386 1.3.1+dfsg-6+b2 [57.2 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 liblemon-dev i386 1.3.1+dfsg-6+b2 [327 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libminimap2-dev i386 2.27+dfsg-1+b2 [141 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5-2+b1 [112 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 samtools i386 1.20-3 [688 kB] Fetched 36.7 MB in 0s (77.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19835 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.1-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_i386.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:i386 (3.13.1-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20169 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_i386.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024b-5_all.deb ... Unpacking tzdata (2024b-5) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_i386.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21179 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.1-2_i386.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package sensible-utils. 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Setting up tzdata (2024b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 14 12:16:41 UTC 2026. Universal Time is now: Sat Feb 14 12:16:41 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libncurses6:i386 (6.5-2+b1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libltdl7:i386 (2.5.4-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.6.0-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libtasn1-6:i386 (4.19.0-3+b3) ... Setting up libsuitesparseconfig7:i386 (1:7.8.3+dfsg-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:i386 (1.9.1-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/flye-2.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flye_2.9.5+dfsg-1_source.changes dpkg-buildpackage: info: source package flye dpkg-buildpackage: info: source version 2.9.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/flye-2.9.5+dfsg' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it find src -name "*.o" -delete rm -f bin/flye-modules rm -rf flye.egg-info/ make[1]: Leaving directory '/build/reproducible-path/flye-2.9.5+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye copying flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye copying flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye copying flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye copying flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/assembly copying flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/assembly copying flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/assembly copying flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/assembly copying flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/assembly creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config copying flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config copying flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing copying flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing copying flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing copying flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/polishing creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils copying flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils copying flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils copying flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils copying flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/utils creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/repeat_graph copying flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/repeat_graph copying flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/repeat_graph copying flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/repeat_graph creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids copying flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids copying flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids copying flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids copying flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/short_plasmids creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle copying flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle copying flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle copying flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle copying flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/trestle creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests copying flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests/data copying flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests/data copying flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests/data copying flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.13/build/flye/tests/data /build/reproducible-path/flye-2.9.5+dfsg/setup.py:35: DeprecationWarning: Use shutil.which instead of find_executable if not find_executable("make"): make[1]: Entering directory '/build/reproducible-path/flye-2.9.5+dfsg' make release -C src -j 4 make[2]: Entering directory '/build/reproducible-path/flye-2.9.5+dfsg/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/chimera.cpp -o assemble/chimera.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/extender.cpp -o assemble/extender.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/main_assemble.cpp -o assemble/main_assemble.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/parameters_estimator.cpp -o assemble/parameters_estimator.o assemble/main_assemble.cpp:214:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 214 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ assemble/main_assemble.cpp:214:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 214 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ In file included from assemble/../sequence/kmer.h:11, from assemble/../sequence/vertex_index.h:17, from assemble/parameters_estimator.h:5, from assemble/parameters_estimator.cpp:5: assemble/../sequence/sequence_container.h:271:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘1099511627776’ to ‘0’ [-Woverflow] 271 | const size_t MAX_SEQUENCE = 1ULL << (8 * 5); | ~~~~~^~~~~~~~~~ In file included from assemble/../sequence/kmer.h:11, from assemble/../sequence/vertex_index.h:17, from assemble/main_assemble.cpp:12: assemble/../sequence/sequence_container.h:271:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘1099511627776’ to ‘0’ [-Woverflow] 271 | const size_t MAX_SEQUENCE = 1ULL << (8 * 5); | ~~~~~^~~~~~~~~~ In file included from assemble/extender.h:9, from assemble/extender.cpp:14: assemble/../sequence/sequence_container.h:271:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘1099511627776’ to ‘0’ [-Woverflow] 271 | const size_t MAX_SEQUENCE = 1ULL << (8 * 5); | ~~~~~^~~~~~~~~~ assemble/../sequence/kmer.h:14:30: error: static assertion failed: 32-bit architectures are not supported 14 | static_assert(sizeof(size_t) == 8, "32-bit architectures are not supported"); | ~~~~~~~~~~~~~~~^~~~ assemble/../sequence/kmer.h:14:30: note: the comparison reduces to ‘(4 == 8)’ In file included from assemble/../sequence/overlap.h:12, from assemble/chimera.h:7, from assemble/chimera.cpp:14: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 71 | IntervalTree(const intervalTree& other) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ assemble/../sequence/vertex_index.h: In member function ‘size_t VertexIndex::IndexChunk::get() const’: assemble/../sequence/vertex_index.h:102:44: warning: left shift count >= width of type [-Wshift-count-overflow] 102 | return ((size_t)hi << 32) + (size_t)low; | ~~~~~~~~~~~^~~~~ assemble/../sequence/vertex_index.h: In member function ‘void VertexIndex::IndexChunk::set(size_t)’: assemble/../sequence/vertex_index.h:107:34: warning: right shift count >= width of type [-Wshift-count-overflow] 107 | hi = val >> 32; | ~~~~^~~~~ assemble/../sequence/kmer.h:14:30: error: static assertion failed: 32-bit architectures are not supported 14 | static_assert(sizeof(size_t) == 8, "32-bit architectures are not supported"); | ~~~~~~~~~~~~~~~^~~~ assemble/../sequence/kmer.h:14:30: note: the comparison reduces to ‘(4 == 8)’ In file included from assemble/../sequence/overlap.h:12, from assemble/extender.h:10: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 71 | IntervalTree(const intervalTree& other) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ In file included from assemble/../sequence/kmer.h:11, from assemble/../sequence/vertex_index.h:17, from assemble/../sequence/overlap.h:14: assemble/../sequence/sequence_container.h:271:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘1099511627776’ to ‘0’ [-Woverflow] 271 | const size_t MAX_SEQUENCE = 1ULL << (8 * 5); | ~~~~~^~~~~~~~~~ assemble/../sequence/kmer.h:14:30: error: static assertion failed: 32-bit architectures are not supported 14 | static_assert(sizeof(size_t) == 8, "32-bit architectures are not supported"); | ~~~~~~~~~~~~~~~^~~~ assemble/../sequence/kmer.h:14:30: note: the comparison reduces to ‘(4 == 8)’ assemble/../sequence/vertex_index.h: In member function ‘size_t VertexIndex::IndexChunk::get() const’: assemble/../sequence/vertex_index.h:102:44: warning: left shift count >= width of type [-Wshift-count-overflow] 102 | return ((size_t)hi << 32) + (size_t)low; | ~~~~~~~~~~~^~~~~ assemble/../sequence/vertex_index.h: In member function ‘void VertexIndex::IndexChunk::set(size_t)’: assemble/../sequence/vertex_index.h:107:34: warning: right shift count >= width of type [-Wshift-count-overflow] 107 | hi = val >> 32; | ~~~~^~~~~ In file included from assemble/../sequence/overlap.h:12, from assemble/main_assemble.cpp:14: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h: At global scope: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 71 | IntervalTree(const intervalTree& other) | ^ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:71:22: note: remove the ‘< >’ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ In file included from assemble/../sequence/vertex_index.h:17, from assemble/../sequence/overlap.h:14: assemble/../sequence/kmer.h:14:30: error: static assertion failed: 32-bit architectures are not supported 14 | static_assert(sizeof(size_t) == 8, "32-bit architectures are not supported"); | ~~~~~~~~~~~~~~~^~~~ assemble/../sequence/kmer.h:14:30: note: the comparison reduces to ‘(4 == 8)’ assemble/../sequence/vertex_index.h: In member function ‘size_t VertexIndex::IndexChunk::get() const’: assemble/../sequence/vertex_index.h:102:44: warning: left shift count >= width of type [-Wshift-count-overflow] 102 | return ((size_t)hi << 32) + (size_t)low; | ~~~~~~~~~~~^~~~~ assemble/../sequence/vertex_index.h: In member function ‘void VertexIndex::IndexChunk::set(size_t)’: assemble/../sequence/vertex_index.h:107:34: warning: right shift count >= width of type [-Wshift-count-overflow] 107 | hi = val >> 32; | ~~~~^~~~~ assemble/../sequence/vertex_index.h: In member function ‘size_t VertexIndex::IndexChunk::get() const’: assemble/../sequence/vertex_index.h:102:44: warning: left shift count >= width of type [-Wshift-count-overflow] 102 | return ((size_t)hi << 32) + (size_t)low; | ~~~~~~~~~~~^~~~~ assemble/../sequence/vertex_index.h: In member function ‘void VertexIndex::IndexChunk::set(size_t)’: assemble/../sequence/vertex_index.h:107:34: warning: right shift count >= width of type [-Wshift-count-overflow] 107 | hi = val >> 32; | ~~~~^~~~~ make[2]: *** [Makefile:34: assemble/parameters_estimator.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [Makefile:34: assemble/main_assemble.o] Error 1 make[2]: *** [Makefile:34: assemble/chimera.o] Error 1 make[2]: *** [Makefile:34: assemble/extender.o] Error 1 make[2]: Leaving directory '/build/reproducible-path/flye-2.9.5+dfsg/src' make[1]: *** [Makefile:38: all] Error 2 make[1]: Leaving directory '/build/reproducible-path/flye-2.9.5+dfsg' Traceback (most recent call last): File "/build/reproducible-path/flye-2.9.5+dfsg/setup.py", line 38, in run subprocess.check_call(["make"]) ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^ File "/usr/lib/python3.13/subprocess.py", line 419, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 2. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/build/reproducible-path/flye-2.9.5+dfsg/setup.py", line 69, in setup(name='flye', ~~~~~^^^^^^^^^^^^^ version=__version__, ^^^^^^^^^^^^^^^^^^^^ ...<11 lines>... 'install' : MakeInstall} ^^^^^^^^^^^^^^^^^^^^^^^^ ) ^ File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 117, in setup return distutils.core.setup(**attrs) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 183, in setup return run_commands(dist) File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 199, in run_commands dist.run_commands() ~~~~~~~~~~~~~~~~~^^ File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 954, in run_commands self.run_command(cmd) ~~~~~~~~~~~~~~~~^^^^^ File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 995, in run_command super().run_command(command) ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 973, in run_command cmd_obj.run() ~~~~~~~~~~~^^ File "/build/reproducible-path/flye-2.9.5+dfsg/setup.py", line 40, in run sys.exit("Compilation error: ", e) ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ TypeError: exit expected at most 1 argument, got 2 E: pybuild pybuild:389: build: plugin distutils failed with: exit code=1: /usr/bin/python3 setup.py build dh_auto_build: error: pybuild --build -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:11: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8947 and its subdirectories