I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 8 10:07:04 -12 2026 I: pbuilder-time-stamp: 1775686024 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [lmfit-py_1.3.2-2.dsc] I: copying [./lmfit-py_1.3.2.orig.tar.gz] I: copying [./lmfit-py_1.3.2-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lmfit-py_1.3.2-2.dsc: unsupported subcommand dpkg-source: info: extracting lmfit-py in lmfit-py-1.3.2 dpkg-source: info: unpacking lmfit-py_1.3.2.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.3.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch dpkg-source: info: applying exclude_test_for_32bit.patch dpkg-source: info: applying intersphinx.patch dpkg-source: info: applying asteval-nameerror.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/38397/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='4b76e4be938d40b583062eaabf5cb875' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='38397' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kOTkt4vB/pbuilderrc_llEE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kOTkt4vB/b1 --logfile b1/build.log lmfit-py_1.3.2-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/38397/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc, pybuild-plugin-pyproject, python3-all, python3-asteval (>= 1.0~), python3-dill, python3-ipython, python3-nbsphinx, python3-numpy (>= 1.19~), python3-pandas, python3-pytest, python3-pytest-cov, python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sphinx-gallery, python3-sympy, python3-uncertainties (>= 3.2.2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19769 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-asteval (>= 1.0~); however: Package python3-asteval is not installed. pbuilder-satisfydepends-dummy depends on python3-dill; however: Package python3-dill is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-nbsphinx; however: Package python3-nbsphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.19~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.6~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-gallery; however: Package python3-sphinx-gallery is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy; however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.2.2~); however: Package python3-uncertainties is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libopenjp2-7{a} libpgm-5.3-0t64{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsodium23{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tinycss2-common{a} python3{a} python3-alabaster{a} python3-all{a} python3-asteval{a} python3-asttokens{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-bleach{a} python3-brotli{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dill{a} python3-docutils{a} python3-executing{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-html5lib{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-client{a} python3-jupyter-core{a} python3-jupyterlab-pygments{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-mpmath{a} python3-nbclient{a} python3-nbconvert{a} python3-nbformat{a} python3-nbsphinx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pandocfilters{a} python3-parso{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-psutil{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-stack-data{a} python3-sympy{a} python3-tinycss2{a} python3-tk{a} python3-toml{a} python3-tornado{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-webencodings{a} python3-wheel{a} python3-zipp{a} python3-zmq{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx optipng pandoc python3-bottleneck python3-cssselect python3-fqdn python3-isoduration python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-sphinxcontrib.bibtex python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 234 newly installed, 0 to remove and 0 not upgraded. Need to get 138 MB of archives. After unpacking 568 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 python3-numpy-dev i386 1:2.2.3+ds-4 [146 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:2.2.3+ds-4 [5060 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20241223 [164 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.47-1 [289 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+24 [217 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.16-1 [834 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-8 [618 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 blt i386 2.5.3+dfsg-8 [5984 B] Get: 59 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 80 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 fonts-lyx all 2.4.3-1 [190 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libgpg-error0 i386 1.51-3 [87.3 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgcrypt20 i386 1.11.0-7 [799 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.83.5-1 [1583 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 99 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3.1 [170 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 108 http://deb.debian.org/debian unstable/main i386 libjs-jquery-metadata all 12-4 [6532 B] Get: 109 http://deb.debian.org/debian unstable/main i386 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1+b2 [239 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.3-1 [215 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1+b1 [169 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libsodium23 i386 1.0.18-1+b2 [186 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 libzmq5 i386 4.3.5-1+b3 [308 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python-tinycss2-common all 1.4.0-1 [44.8 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.2-2 [1044 B] Get: 143 http://deb.debian.org/debian unstable/main i386 python3-asteval all 1.0.6-2 [22.0 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 python3-asttokens all 3.0.0-1 [20.1 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 python3-attr all 25.1.0-1 [68.7 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 python3-babel all 2.17.0-1 [117 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 python3-webencodings all 0.5.1-5 [11.1 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 python3-html5lib all 1.2-1 [92.2 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 python3-bleach all 6.2.0-1 [51.2 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 python3-brotli i386 1.1.0-2+b7 [318 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 python3-bs4 all 4.13.3-1 [166 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 154 http://deb.debian.org/debian unstable/main i386 python3-cffi-backend i386 1.17.1-2+b2 [96.5 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 python3-contourpy i386 1.3.1-1+b1 [223 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 python3-coverage i386 7.6.0+dfsg1-2+b2 [176 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 160 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 python3-dill all 0.3.9-1 [83.5 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 python3-roman all 5.0-1 [10.6 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 python3-executing all 2.2.0-0.1 [24.5 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 python3-fs all 2.4.16-7 [95.2 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.3.1-1+b1 [1257 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 python3-lz4 i386 4.4.0+dfsg-1+b1 [25.5 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.14.1-4+b1 [17.0 MB] Get: 173 http://deb.debian.org/debian unstable/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 python3-sympy all 1.13.3-5 [4148 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 python3-fonttools i386 4.55.3-2+b1 [1442 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 180 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 181 http://deb.debian.org/debian unstable/main i386 python3-parso all 0.8.4-1 [67.8 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 python3-typeshed all 0.0~git20241223.ea91db2-1 [1530 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 186 http://deb.debian.org/debian unstable/main i386 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 python3-prompt-toolkit all 3.0.50-1 [278 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 190 http://deb.debian.org/debian unstable/main i386 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 python3-pexpect all 4.9-3 [55.6 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 python3-ipython all 8.30.0-2 [568 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 python3-rpds-py i386 0.21.0-2+b1 [275 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 python3-referencing all 0.35.1-2 [23.5 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 199 http://deb.debian.org/debian unstable/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 python3-psutil i386 5.9.8-2 [226 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 python3-tornado i386 6.4.2-1 [349 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 python3-zmq i386 26.2.1-1+b1 [181 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 python3-jupyter-client all 8.6.3-2 [92.4 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Get: 206 http://deb.debian.org/debian unstable/main i386 python3-kiwisolver i386 1.4.7-3+b1 [69.7 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 python3-pil i386 11.1.0-5+b1 [518 kB] Get: 208 http://deb.debian.org/debian unstable/main i386 python3.13-tk i386 3.13.2-1 [104 kB] Get: 209 http://deb.debian.org/debian unstable/main i386 python3-tk i386 3.13.2-1 [9516 B] Get: 210 http://deb.debian.org/debian unstable/main i386 python3-pil.imagetk i386 11.1.0-5+b1 [81.9 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.8.3-7+b1 [23.0 MB] Get: 213 http://deb.debian.org/debian unstable/main i386 python3-mistune all 3.0.2-2 [33.2 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 215 http://deb.debian.org/debian unstable/main i386 python3-nbclient all 0.8.0-2 [62.2 kB] Get: 216 http://deb.debian.org/debian unstable/main i386 python3-tinycss2 all 1.4.0-1 [24.9 kB] Get: 217 http://deb.debian.org/debian unstable/main i386 python3-pandocfilters all 1.5.1-1 [23.7 kB] Get: 218 http://deb.debian.org/debian unstable/main i386 python3-nbconvert all 7.16.6-1 [160 kB] Get: 219 http://deb.debian.org/debian unstable/main i386 sphinx-common all 8.1.3-5 [617 kB] Get: 220 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 221 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 222 http://deb.debian.org/debian unstable/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 223 http://deb.debian.org/debian unstable/main i386 python3-sphinx all 8.1.3-5 [468 kB] Get: 224 http://deb.debian.org/debian unstable/main i386 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB] Get: 225 http://deb.debian.org/debian unstable/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 226 http://deb.debian.org/debian unstable/main i386 python3-tz all 2025.1-3 [4004 B] Get: 227 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 228 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 229 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 230 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 231 http://deb.debian.org/debian unstable/main i386 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 232 http://deb.debian.org/debian unstable/main i386 python3-setuptools-scm all 8.2.0-1 [41.0 kB] Get: 233 http://deb.debian.org/debian unstable/main i386 python3-sphinx-gallery all 0.17.1-1 [401 kB] Get: 234 http://deb.debian.org/debian unstable/main i386 python3-uncertainties all 3.2.2-1 [54.7 kB] Fetched 138 MB in 2s (61.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19769 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_i386.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:i386 (3.13.2-1) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20103 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_i386.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.7-1_i386.deb ... Unpacking libffi8:i386 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up file (1:5.45-3+b1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:i386 (2.1-6.1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up libkrb5support0:i386 (1.21.3-4) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 8 22:07:35 UTC 2026. Universal Time is now: Wed Apr 8 22:07:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpgm-5.3-0t64:i386 (5.3.128~dfsg-2.1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3.1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libfribidi0:i386 (1.0.16-1) ... 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Setting up python3-sphinx (8.1.3-5) ... Setting up python3-sphinx-gallery (0.17.1-1) ... Setting up python3-nbsphinx (0.9.5+ds-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lmfit-py-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lmfit-py_1.3.2-2_source.changes dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.3.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stuart Prescott dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2' find . -name "*.pickle" -delete rm -rf doc/examples if [ -f lmfit/version.py.orig ] ; then mv lmfit/version.py.orig lmfit/version.py ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2' cp -a lmfit/version.py lmfit/version.py.orig dh_auto_configure pybuild --configure -i python{version} -p 3.13 make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2' dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit * Building wheel... running bdist_wheel running build running build_py creating build/lib/lmfit copying lmfit/lineshapes.py -> build/lib/lmfit copying lmfit/_ampgo.py -> build/lib/lmfit copying lmfit/printfuncs.py -> build/lib/lmfit copying lmfit/model.py -> build/lib/lmfit copying lmfit/confidence.py -> build/lib/lmfit copying lmfit/version.py -> build/lib/lmfit copying lmfit/models.py -> build/lib/lmfit copying lmfit/minimizer.py -> build/lib/lmfit copying lmfit/__init__.py -> build/lib/lmfit copying lmfit/jsonutils.py -> build/lib/lmfit copying lmfit/parameter.py -> build/lib/lmfit running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS.txt' writing manifest file 'lmfit.egg-info/SOURCES.txt' installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/model.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/confidence.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/version.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/models.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/minimizer.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/__init__.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-i686/wheel/./lmfit copying build/lib/lmfit/parameter.py -> build/bdist.linux-i686/wheel/./lmfit running install_egg_info Copying lmfit.egg-info to build/bdist.linux-i686/wheel/./lmfit-1.3.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/lmfit-1.3.2.dist-info/WHEEL creating '/build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/.tmp-owks4iw2/lmfit-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'lmfit/__init__.py' adding 'lmfit/_ampgo.py' adding 'lmfit/confidence.py' adding 'lmfit/jsonutils.py' adding 'lmfit/lineshapes.py' adding 'lmfit/minimizer.py' adding 'lmfit/model.py' adding 'lmfit/models.py' adding 'lmfit/parameter.py' adding 'lmfit/printfuncs.py' adding 'lmfit/version.py' adding 'lmfit-1.3.2.dist-info/AUTHORS.txt' adding 'lmfit-1.3.2.dist-info/LICENSE' adding 'lmfit-1.3.2.dist-info/METADATA' adding 'lmfit-1.3.2.dist-info/WHEEL' adding 'lmfit-1.3.2.dist-info/top_level.txt' adding 'lmfit-1.3.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built lmfit-1.3.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.13 I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build configfile: pyproject.toml plugins: typeguard-4.4.2, cov-5.0.0 collected 662 items tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 4%] tests/test_algebraic_constraint.py .... [ 4%] tests/test_ampgo.py ............ [ 6%] tests/test_basicfit.py . [ 6%] tests/test_basinhopping.py ..... [ 7%] tests/test_bounded_jacobian.py .. [ 7%] tests/test_bounds.py . [ 8%] tests/test_brute.py ............ [ 9%] tests/test_builtin_models.py ....... [ 10%] tests/test_confidence.py ............. [ 12%] tests/test_covariance_matrix.py ..ssssssss. [ 14%] tests/test_custom_independentvar.py . [ 14%] tests/test_default_kws.py . [ 14%] tests/test_dual_annealing.py ... [ 15%] tests/test_itercb.py .................... [ 18%] tests/test_jsonutils.py ................. [ 20%] tests/test_least_squares.py ..... [ 21%] tests/test_lineshapes.py ............................................... [ 28%] .......................................... [ 35%] tests/test_manypeaks_speed.py . [ 35%] tests/test_max_nfev.py ........................... [ 39%] tests/test_minimizer.py .ssssssssssssss [ 41%] tests/test_model.py .................................................... [ 49%] ........................................................................ [ 60%] ......s....s................................................ [ 69%] tests/test_model_saveload.py ....................... [ 72%] tests/test_model_uncertainties.py ....... [ 73%] tests/test_models.py ........ [ 75%] tests/test_multidatasets.py . [ 75%] tests/test_nose.py ...................s...... [ 79%] tests/test_pandas.py .. [ 79%] tests/test_parameter.py ................................................ [ 86%] .......... [ 88%] tests/test_parameters.py ............................... [ 92%] tests/test_params_uvars.py .... [ 93%] tests/test_printfuncs.py ............................s...... [ 98%] tests/test_shgo.py ...... [ 99%] tests/test_stepmodel.py .. [100%] =============================== warnings summary =============================== tests/test_manypeaks_speed.py:15 /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=5) tests/test_model_saveload.py::test_load_legacy_modelresult /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'gaussian', saved with Python version 3.10 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.10 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.11 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.12 warnings.warn(msg) tests/test_nose.py::CommonMinimizerTest::test_emcee /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_float /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_output /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_seed /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_parameter.py::test__array__ /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/tests/test_parameter.py:373: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword assert np.array(par) == np.array(10.0) tests/test_parameters.py::test_parameters__array__ /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/tests/test_parameters.py:229: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword assert_allclose(np.array(pars), np.array([10.0, 20.0])) tests/test_parameters.py::test_dumps_loads_parameters_usersyms /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:30: DeprecationWarning: numpy.core is deprecated and has been renamed to numpy._core. The numpy._core namespace contains private NumPy internals and its use is discouraged, as NumPy internals can change without warning in any release. In practice, most real-world usage of numpy.core is to access functionality in the public NumPy API. If that is the case, use the public NumPy API. If not, you are using NumPy internals. If you would still like to access an internal attribute, use numpy._core.half. t = getattr(module, oname, None) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.13.2-final-0 ----------- Coverage HTML written to dir htmlcov =========== 636 passed, 26 skipped, 19 warnings in 144.50s (0:02:24) =========== I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build -name "*.sav" -delete rm -fr -- /tmp/dh-xdg-rundir-elnHpcZj create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/lmfit-py-1.3.2/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/lmfit-py-1.3.2/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2' mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py cp doc/sphinx/ext_mathjax.py doc/extensions.py PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html # HTML generator Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. loading intersphinx inventory 'py' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'matplotlib.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'sympy' from https://docs.sympy.org/latest/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'pandas.pydata.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.sympy.org/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.sympy.org', port=443): Max retries exceeded with url: /latest/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.sympy.org' ([Errno -3] Temporary failure in name resolution)")) generating gallery... generating gallery for examples... [ 6%] example_use_pandas.py generating gallery for examples... [ 11%] example_expression_model.py generating gallery for examples... [ 17%] example_fit_with_inequality.py generating gallery for examples... [ 22%] example_diffev.py generating gallery for examples... [ 28%] example_fit_with_bounds.py generating gallery for examples... [ 33%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 39%] example_reduce_fcn.py generating gallery for examples... [ 44%] example_sympy.py generating gallery for examples... [ 50%] example_basinhopping.py generating gallery for examples... [ 56%] example_fit_multi_datasets.py generating gallery for examples... [ 61%] example_Model_interface.py generating gallery for examples... [ 67%] example_fit_with_derivfunc.py generating gallery for examples... [ 72%] example_detect_outliers.py generating gallery for examples... [ 78%] example_complex_resonator_model.py generating gallery for examples... [ 83%] lmfit_emcee_model_selection.py generating gallery for examples... [ 89%] example_confidence_interval.py generating gallery for examples... [ 94%] example_two_dimensional_peak.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_brute.py: 32.80 sec 0.0 MB - ../examples/example_confidence_interval.py: 31.91 sec 0.0 MB - ../examples/example_basinhopping.py: 4.31 sec 0.0 MB - ../examples/example_two_dimensional_peak.py: 3.67 sec 0.0 MB - ../examples/example_detect_outliers.py: 1.39 sec 0.0 MB - ../examples/example_sympy.py: 1.31 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 0.92 sec 0.0 MB - ../examples/example_diffev.py: 0.64 sec 0.0 MB - ../examples/example_Model_interface.py: 0.51 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 0.39 sec 0.0 MB - ../examples/example_reduce_fcn.py: 0.39 sec 0.0 MB - ../examples/example_use_pandas.py: 0.38 sec 0.0 MB - ../examples/example_expression_model.py: 0.37 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 0.35 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 0.35 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 0.35 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 0.32 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 14 source files that are out of date updating environment: [new config] 33 added, 0 changed, 0 removed reading sources... [ 3%] bounds reading sources... [ 6%] builtin_models reading sources... [ 9%] confidence reading sources... [ 12%] constraints reading sources... [ 15%] contents reading sources... [ 18%] examples/example_Model_interface reading sources... [ 21%] examples/example_basinhopping reading sources... [ 24%] examples/example_brute reading sources... [ 27%] examples/example_complex_resonator_model reading sources... [ 30%] examples/example_confidence_interval reading sources... [ 33%] examples/example_detect_outliers reading sources... [ 36%] examples/example_diffev reading sources... [ 39%] examples/example_expression_model reading sources... [ 42%] examples/example_fit_multi_datasets reading sources... [ 45%] examples/example_fit_with_algebraic_constraint reading sources... [ 48%] examples/example_fit_with_bounds reading sources... [ 52%] examples/example_fit_with_derivfunc reading sources... [ 55%] examples/example_fit_with_inequality reading sources... [ 58%] examples/example_reduce_fcn reading sources... [ 61%] examples/example_sympy reading sources... [ 64%] examples/example_two_dimensional_peak reading sources... [ 67%] examples/example_use_pandas reading sources... [ 70%] examples/index reading sources... [ 73%] examples/lmfit_emcee_model_selection reading sources... [ 76%] faq reading sources... [ 79%] fitting reading sources... [ 82%] index reading sources... [ 85%] installation reading sources... [ 88%] intro reading sources... [ 91%] model reading sources... [ 94%] parameters reading sources... [ 97%] support reading sources... [100%] whatsnew /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:27: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from lmfit.models import LinearModel, LorentzianModel peak = LorentzianModel() background = LinearModel() model = peak + background [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:289: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import ExpressionModel mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:303: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, sin x = linspace(0, 10, 501) params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04) y = mod.eval(params, x=x) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:324: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: script = """ def mycurve(x, amp, cen, sig): loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig) gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig) return log(loren) * gradient(gauss) / gradient(x) """ [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:335: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script, independent_vars=['x']) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:354: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:374: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:385: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Gaussian Model') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:406: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:415: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:424: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Lorentzian Model') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:435: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:443: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:454: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, '-') axes[0].plot(x, out.best_fit, '-', label='Voigt Model\ngamma constrained') axes[0].legend() # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, '-') axes[1].plot(x, out_gamma.best_fit, '-', label='Voigt Model\ngamma unconstrained') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:485: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:522: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:533: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:540: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:563: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:579: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:590: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y) axes[0].plot(x, init, '--', label='initial fit') axes[0].plot(x, out.best_fit, '-', label='best fit') axes[0].legend() comps = out.eval_components(x=x) axes[1].plot(x, y) axes[1].plot(x, comps['g1_'], '--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], '--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], '--', label='Exponential component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:632: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:638: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:652: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:689: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: import numpy as np import matplotlib.pyplot as plt from lmfit.models import SplineModel, GaussianModel data = np.loadtxt('test_splinepeak.dat') x = data[:, 0] y = data[:, 1] plt.plot(x, y, label='data') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:706: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:717: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = GaussianModel(prefix='peak_') params = model.make_params(amplitude=8, center=16, sigma=1) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:731: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) bkg = SplineModel(prefix='bkg_', xknots=knot_xvals) params.update(bkg.guess(y, x)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:751: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = model + bkg params['peak_amplitude'].min = 0 params['peak_center'].min = 10 params['peak_center'].max = 20 out = model.fit(y, params, x=x) print(out.fit_report(min_correl=0.3)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:770: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.3)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:786: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = out.eval_components() plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:797: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:810: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:818: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:836: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals1 = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) knot_xvals2 = np.array([1, 3, 5, 7, 9, 11, 13, 16, 19, 21, 23, 25]) knot_xvals3 = np.array([1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25]) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:877: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:894: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:47: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:68: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:78: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:105: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:144: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: # import matplotlib.pyplot as plt import numpy as np from lmfit import conf_interval, conf_interval2d, report_ci from lmfit.lineshapes import gaussian from lmfit.models import GaussianModel, LinearModel sigma_levels = [1, 2, 3] rng = np.random.default_rng(seed=102) ######################### # set up data -- deliberately adding imperfections and # a small amount of non-Gaussian noise npts = 501 x = np.linspace(1, 100, num=npts) noise = rng.normal(scale=0.3, size=npts) + 0.2*rng.f(3, 9, size=npts) y = (gaussian(x, amplitude=83, center=47., sigma=5.) + 0.02*x + 4 + 0.25*np.cos((x-20)/8.0) + noise) mod = GaussianModel() + LinearModel() params = mod.make_params(amplitude=100, center=50, sigma=5, slope=0, intecept=2) out = mod.fit(y, params, x=x) print(out.fit_report()) ######################### # run conf_intervale, print report sigma_levels = [1, 2, 3] ci = conf_interval(out, out, sigmas=sigma_levels) print("## Confidence Report:") report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:191: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ######################### # plot initial fit colors = ('#2030b0', '#b02030', '#207070') fig, axes = plt.subplots(2, 3, figsize=(15, 9.5)) axes[0, 0].plot(x, y, 'o', markersize=3, label='data', color=colors[0]) axes[0, 0].plot(x, out.best_fit, label='fit', color=colors[1]) axes[0, 0].set_xlabel('x') axes[0, 0].set_ylabel('y') axes[0, 0].legend() aix, aiy = 0, 0 nsamples = 50 explicitly_calculate_sigma = True for pairs in (('sigma', 'amplitude'), ('intercept', 'amplitude'), ('slope', 'intercept'), ('slope', 'center'), ('sigma', 'center')): xpar, ypar = pairs if explicitly_calculate_sigma: print(f"Generating chi-square map for {pairs}") c_x, c_y, chi2_mat = conf_interval2d(out, out, xpar, ypar, nsamples, nsamples, nsigma=3.5, chi2_out=True) # explicitly calculate sigma matrix: sigma increases chi_square # from chi_square_best # to chi_square + sigma**2 * reduced_chi_square # so: sigma = sqrt((chi2-chi2_best)/ reduced_chi_square) chi2_min = chi2_mat.min() sigma_mat = np.sqrt((chi2_mat-chi2_min)/out.redchi) else: print(f"Generating sigma map for {pairs}") # or, you could just calculate the matrix of probabilities as: c_x, c_y, sigma_mat = conf_interval2d(out, out, xpar, ypar, nsamples, nsamples, nsigma=3.5) aix += 1 if aix == 2: aix = 0 aiy += 1 ax = axes[aix, aiy] cnt = ax.contour(c_x, c_y, sigma_mat, levels=sigma_levels, colors=colors, linestyles='-') ax.clabel(cnt, inline=True, fmt=r"$\sigma=%.0f$", fontsize=13) # draw boxes for estimated uncertaties: # dotted : scaled stderr from initial fit # dashed : values found from conf_interval() xv = out.params[xpar].value xs = out.params[xpar].stderr yv = out.params[ypar].value ys = out.params[ypar].stderr cix = ci[xpar] ciy = ci[ypar] nc = len(sigma_levels) for i in sigma_levels: # dotted line: scaled stderr ax.plot((xv-i*xs, xv+i*xs, xv+i*xs, xv-i*xs, xv-i*xs), (yv-i*ys, yv-i*ys, yv+i*ys, yv+i*ys, yv-i*ys), linestyle='dotted', color=colors[i-1]) # dashed line: refined uncertainties from conf_interval xsp, xsm = cix[nc+i][1], cix[nc-i][1] ysp, ysm = ciy[nc+i][1], ciy[nc-i][1] ax.plot((xsm, xsp, xsp, xsm, xsm), (ysm, ysm, ysp, ysp, ysm), linestyle='dashed', color=colors[i-1]) ax.set_xlabel(xpar) ax.set_ylabel(ypar) ax.grid(True, color='#d0d0d0') plt.show() # [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:295: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:306: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:311: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:328: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:362: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:381: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars.add('frac_curve1', value=0.5, min=0, max=1) pars.add('frac_curve2', expr='1-frac_curve1') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:85: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('amp_1', value=0.5, min=0, max=1) pars.add('cen_1', value=2.2) pars.add('wid_1', value=0.2) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:94: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('amp_2', expr='(2.0 - amp_1**2)') pars.add('wid_2', expr='sqrt(pi)*wid_1') pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('param_a', value=1) pars.add('param_b', value=2) pars.add('test_val', value=100) pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:113: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if pars['test_val'].value/2. > 100: bounded = pars['param_a'].value else: bounded = pars['param_b'].value [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:132: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('x', value=5, vary=True) pars.add('delta', value=5, max=10, vary=True) pars.add('y', expr='delta-x') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:175: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def mylorentzian(x, amp, cen, wid): "lorentzian function: wid = half-width at half-max" return (amp / (1 + ((x-cen) / wid)**2)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:185: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars._asteval.symtable['lorentzian'] = mylorentzian [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:194: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Minimizer def userfcn(x, params): pass fitter = Minimizer(userfcn, pars) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:209: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() fitter = Minimizer(userfcn, pars) fitter.params._asteval.symtable['lorentzian'] = mylorentzian [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/faq.rst:249: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit def quad_off(x, x0, a, b, c): model = a + b * x**2 model[np.where(x < x0)] = c return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/faq.rst:292: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from scipy.special import erf import lmfit def quad_off(x, x0, a, b, c): m1 = a + b * x**2 m2 = c * np.ones(len(x)) # step up from 0 to 1 at x0: (erf(x-x0)+1)/2 # step down from 1 to 0 at x0: (1-erf(x-x0))/2 model = m1 * (erf(x-x0)+1)/2 + m2 * (1-erf(x-x0))/2 return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:64: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sign, sin, pi def residual(pars, x, data=None, eps=None): # unpack parameters: extract .value attribute for each parameter parvals = pars.valuesdict() period = parvals['period'] shift = parvals['shift'] decay = parvals['decay'] if abs(shift) > pi/2: shift = shift - sign(shift)*pi if abs(period) < 1.e-10: period = sign(period)*1.e-10 model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay) if data is None: return model if eps is None: return model - data return (model-data) / eps [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:97: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: from lmfit import Parameter, Parameters params = Parameters() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:104: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['period'] = Parameter(name='period', value=2, min=1.e-10) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:110: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: period = 1 [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:115: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if abs(period) < 1.e-10: period = sign(period)*1.e-10 [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:521: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:526: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:535: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print(f'{name:7s} {param.value:11.5f} {param.stderr:11.5f}') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:643: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:656: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:669: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:683: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:690: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'o') plt.plot(x, residual(mi.params) + y, label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:717: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:724: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:743: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction, 'o') plt.xlabel('walker') plt.ylabel('acceptance fraction') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:753: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:765: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:786: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:810: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError estimates from emcee:') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin def residual(variables, x, data, uncertainty): """Model a decaying sine wave and subtract data.""" amp = variables[0] phaseshift = variables[1] freq = variables[2] decay = variables[3] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:60: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import linspace, random from scipy.optimize import leastsq # generate synthetic data with noise x = linspace(0, 100) noise = random.normal(size=x.size, scale=0.2) data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + noise # generate experimental uncertainties uncertainty = abs(0.16 + random.normal(size=x.size, scale=0.05)) variables = [10.0, 0.2, 3.0, 0.007] out = leastsq(residual, variables, args=(x, data, uncertainty)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:123: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin from lmfit import minimize, Parameters def residual(params, x, data, uncertainty): amp = params['amp'] phaseshift = params['phase'] freq = params['frequency'] decay = params['decay'] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty params = Parameters() params.add('amp', value=10) params.add('decay', value=0.007) params.add('phase', value=0.2) params.add('frequency', value=3.0) out = minimize(residual, params, args=(x, data, uncertainty)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:158: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params params = create_params(amp=10, decay=0.007, phase=0.2, frequency=3.0) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:176: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = Parameters() params.add('amp', value=10, vary=False) params.add('decay', value=0.007, min=0.0) params.add('phase', value=0.2) params.add('frequency', value=3.0, max=10) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:192: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = create_params(amp={'value': 10, 'vary': False}, decay={'value': 0.007, 'min': 0}, phase=0.2, frequency={'value': 3.0, 'max':10}) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:201: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['amp'].vary = False params['decay'].min = 0.10 [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:49: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:57: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:69: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:90: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print(f'parameter names: {gmodel.param_names}') print(f'independent variables: {gmodel.independent_vars}') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:120: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:130: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:144: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x_eval = linspace(0, 10, 201) y_eval = gmodel.eval(params, x=x_eval) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:151: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:160: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, params, x=x) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:166: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:173: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:180: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:190: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:204: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: gmodel = Model(gaussian) result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:350: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:375: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:407: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_positive: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) print(f'independent variables: {mod.independent_vars}') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:440: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def voigt(x, amplitude=1.0, center=0.0, sigma=1.0, gamma=None): """Return a 1-dimensional Voigt function. ... """ if gamma is None: gamma = sigma z = (x-center + 1j*gamma) / max(tiny, (sigma*s2)) return amplitude*real(wofz(z)) / max(tiny, (sigma*s2pi)) mod = Model(voigt) print(f'independent variables: {mod.independent_vars}') params = mod.make_params(amplitude=10, center=5, sigma=2) # or params2 = mod.make_params(amplitude=10, center=5, sigma=2, gamma=1.5) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:483: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:530: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a=1, b=0): return a*x + 10*a - b [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:537: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a, b): return a*x + 10*a - b [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:556: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) # simply supply initial values pars = mod.make_params(a=3, b=0.5) # supply initial values, attributes for bounds, etcetera: pars_bounded = mod.make_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:576: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params mod = Model(myfunc) # simply supply initial values pars = create_params(a=3, b=0.5) # supply initial values and attributes for bounds, etc: pars_bounded = create_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:600: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x = linspace(0, 10, 100) y_eval = mod.eval(x=x, a=7.0, b=-2.0) y_sim = y_eval + random.normal(0, 0.2, x.size) out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:631: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('bounded_parameter', min=0, max=1.0) pars = mod.make_params() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:643: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('Parameter hints:') for pname, par in mod.param_hints.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:658: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) mod.set_param_hint('wid', min=0) mod.set_param_hint('fwhm', expr='2.3548*wid') params = mod.make_params(amp={'value': 10, 'min':0.1, 'max':2000}, cen=5.5, wid=1.25) params.pretty_print() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:775: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:779: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1077: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1081: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label=r'3-$\sigma$ uncertainty band') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1092: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label=r'3-$\sigma$ uncertainty band') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1116: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty2.py [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1126: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty_pred.py [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1169: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_uvars_params.py [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1201: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1206: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1228: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def gaussian_plus_line(x, amp, cen, wid, slope, intercept): """line + 1-d gaussian""" gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2)) line = slope*x + intercept return gauss + line [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1239: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian_plus_line) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1251: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def line(x, slope, intercept): """a line""" return slope*x + intercept [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1259: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) + Model(line) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1265: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1270: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1277: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() comps = result.eval_components() axes[1].plot(x, y, 'o') axes[1].plot(x, comps['gaussian'], '--', label='Gaussian component') axes[1].plot(x, comps['line'], '--', label='Line component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1299: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = result.eval_components() plt.plot(x, y, 'o') plt.plot(x, comps['gaussian'], '--', label='Gaussian component') plt.plot(x, comps['line'], '--', label='Line component') [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1321: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: xwide = linspace(-5, 25, 3001) predicted = mod.eval(result.params, x=xwide) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1338: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: def fcn1(x, a): pass def fcn2(x, b): pass def fcn3(x, c): pass [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1350: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(fcn1) + Model(fcn2) * Model(fcn3) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1364: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np def convolve(dat, kernel): """simple convolution of two arrays""" npts = min(len(dat), len(kernel)) pad = np.ones(npts) tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1])) out = np.convolve(tmp, kernel, mode='valid') noff = int((len(out) - npts) / 2) return (out[noff:])[:npts] [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1382: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1387: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1394: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() axes[1].plot(x, y, 'o') axes[1].plot(x, 10*comps['jump'], '--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], '-', label='Gaussian component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/parameters.rst:117: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_basic.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.2/doc/parameters.rst:125: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def fcn2min(params, x, data): """Model a decaying sine wave and subtract data.""" v = params.valuesdict() model = v['amp'] * np.sin(x*v['omega'] + v['shift']) * np.exp(-x*x*v['decay']) return model - data [docutils] looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/lmfit-py-1.3.2/doc/bounds.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- bounds /build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- builtin_models /build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- confidence /build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- constraints /build/reproducible-path/lmfit-py-1.3.2/doc/examples/index.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- examples/index /build/reproducible-path/lmfit-py-1.3.2/doc/faq.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- faq /build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- fitting /build/reproducible-path/lmfit-py-1.3.2/doc/installation.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- installation /build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- intro /build/reproducible-path/lmfit-py-1.3.2/doc/model.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- model /build/reproducible-path/lmfit-py-1.3.2/doc/parameters.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- parameters /build/reproducible-path/lmfit-py-1.3.2/doc/support.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- support /build/reproducible-path/lmfit-py-1.3.2/doc/whatsnew.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- whatsnew done preparing documents... done copying assets... copying downloadable files... 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The HTML pages are in .pybuild/html. rm doc/extensions.py mv examples/nodoc_example_emcee_Model_interface.py examples/example_emcee_Model_interface.py dh_installdocs -i install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc dh_installdocs .pybuild/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd '.pybuild/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/lmfit-py-1.3.2/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/.debhelper/generated/python3-lmfit/dh_installchangelogs.dch.trimmed debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/.debhelper/generated/python-lmfit-doc/dh_installchangelogs.dch.trimmed debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2' rm -rf debian/python3-lmfit/usr/lib/python3*/dist-packages/htmlcov debian/python3-lmfit/usr/lib/python3*/dist-packages/.coverage make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-lmfit-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:205: processing package python3-lmfit... D: dh_python3 fs:50: moving files from debian/python3-lmfit/usr/lib/python3.13/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:179: Writing INSTALLER in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.2.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.2.dist-info D: dh_python3 fs:338: package python3-lmfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-lmfit D: dh_python3 pydist:175: trying to find dependency for asteval>=1.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for numpy>=1.19 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for scipy>=1.6 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for uncertainties>=3.2.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for dill>=0.3.4 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pycairo; platform_system == "Windows" and extra == "doc" (python=None) I: dh_python3 pydist:339: Ignoring complex environment marker: pycairo; platform_system == "Windows" and extra == "doc" D: dh_python3 depends:253: D={'python3-asteval (>= 1.0~)', 'python3-uncertainties (>= 3.2.2~)', 'python3-dill', 'python3-scipy (>= 1.6~)', 'python3-numpy (>= 1.19~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js rm -f 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debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/83c1efe92ae9450e505c8e1a6f140c89/example_diffev.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9525432cdc678720dba934ae8fde54b3/example_brute.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/43307aed08caee4fd5f81b541b305e07/example_fit_with_derivfunc.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fe2af31b7b0cbda8b83cc55e6a993962/example_fit_multi_datasets.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/00134ee71b9a3140093a2c880ffc05b2/example_two_dimensional_peak.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9896395df97ee7377a6f37d810ed61b7/example_fit_with_inequality.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/f81f821349f6ac014b70d7d599914cf0/example_expression_model.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/94d199f783ca5474abd6b2528828a3da/example_reduce_fcn.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/dbec5987901e14219cbb0374bcb09f84/example_Model_interface.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/4b0b2bd3ab5ac85a687b73fdf77c10e8/example_fit_with_algebraic_constraint.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/1e1423cf629493dec61889ad589cc4ee/example_sympy.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/570649c46ce3ba7d3aa57423dbdf4bfc/example_detect_outliers.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/8bc8bf935cb55b846fb887ae67119e73/example_fit_with_bounds.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/d91d8231a4fc8b35dce7ae4cca7141a1/example_use_pandas.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/cb0c48698554996e8733a1803c042898/lmfit_emcee_model_selection.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/699f40a9aaadc3e2940695c56ce1a766/example_complex_resonator_model.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/a77b5add2eaa4ab07fa4f0e915c3066a/example_basinhopping.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/71e355b3b30ce74828ca4cf53539dee9/example_confidence_interval.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip dh_compress -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian cd '/build/reproducible-path/lmfit-py-1.3.2' chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb cd '/build/reproducible-path/lmfit-py-1.3.2' dh_fixperms -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -m0755 -d debian/python-lmfit-doc/DEBIAN dh_numpy3 -O--buildsystem=pybuild Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/DEBIAN echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -cdebian/control -Pdebian/python-lmfit-doc install -m0755 -d debian/python3-lmfit/DEBIAN echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -cdebian/control -Pdebian/python3-lmfit chmod 0644 -- debian/python3-lmfit/DEBIAN/control chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN install -m0755 -d debian/python-lmfit-doc/DEBIAN cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.3.2-2_all.deb'. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.3.2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../lmfit-py_1.3.2-2_i386.buildinfo dpkg-genchanges --build=binary -O../lmfit-py_1.3.2-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/38397 and its subdirectories I: Current time: Wed Apr 8 10:12:24 -12 2026 I: pbuilder-time-stamp: 1775686344