I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 8 18:54:02 -12 2025 I: pbuilder-time-stamp: 1739084042 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plink1.9_1.90~b7.7-241022-1.dsc] I: copying [./plink1.9_1.90~b7.7-241022.orig.tar.xz] I: copying [./plink1.9_1.90~b7.7-241022-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.7-241022-1.dsc: unsupported subcommand dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b7.7-241022 dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying blas.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22889/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='cd45f539f4984a4f95c7391220ffa86d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22889' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WOESKQfh/pbuilderrc_izlc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WOESKQfh/b1 --logfile b1/build.log plink1.9_1.90~b7.7-241022-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22889/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19792 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack.so; however: Package liblapack-dev is not installed. Package liblapack.so is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 29.4 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libblas-dev i386 3.12.1-2 [162 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-16 [735 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 liblapack-dev i386 3.12.1-2 [4458 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 29.4 MB in 1s (36.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19792 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-3_i386.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../30-libblas3_3.12.1-2_i386.deb ... Unpacking libblas3:i386 (3.12.1-2) ... Selecting previously unselected package libblas-dev:i386. Preparing to unpack .../31-libblas-dev_3.12.1-2_i386.deb ... Unpacking libblas-dev:i386 (3.12.1-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../32-libgfortran5_14.2.0-16_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-16) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../33-liblapack3_3.12.1-2_i386.deb ... Unpacking liblapack3:i386 (3.12.1-2) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../34-liblapack-dev_3.12.1-2_i386.deb ... Unpacking liblapack-dev:i386 (3.12.1-2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libgfortran5:i386 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libblas-dev:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up liblapack-dev:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-1_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.7-241022-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_clean make -j11 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_build make -j11 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from plink_data.c:18: plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)': plink_data.c:5831:24: warning: '%s' directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 5831 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:5831:47: note: format string is defined here 5831 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~ In file included from /usr/include/stdio.h:970, from plink_common.h:25: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)' at plink_data.c:5831:2: /usr/include/i386-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 118 and 2147483754 bytes into a destination of size 262144 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)': plink_data.c:8039:24: warning: '%s' directive output may be truncated writing between 5 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 8039 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:8039:47: note: format string is defined here 8039 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)' at plink_data.c:8039:2: /usr/include/i386-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 30 and 2147483670 bytes into a destination of size 262144 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)': plink_data.c:14583:22: warning: '%s' directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 14583 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:14583:45: note: format string is defined here 14583 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)' at plink_data.c:14583:7: /usr/include/i386-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 128 and 2147483764 bytes into a destination of size 262144 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.7-241022-1_i386.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.7-241022-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.7-241022-1_i386.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.7-241022-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22889 and its subdirectories I: Current time: Sat Feb 8 18:55:29 -12 2025 I: pbuilder-time-stamp: 1739084129