I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 1 05:38:30 +14 2025 I: pbuilder-time-stamp: 1740757110 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pymatgen_2025.2.18+dfsg1-4.dsc] I: copying [./pymatgen_2025.2.18+dfsg1.orig.tar.xz] I: copying [./pymatgen_2025.2.18+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.2.18+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting pymatgen in pymatgen-2025.2.18+dfsg1 dpkg-source: info: unpacking pymatgen_2025.2.18+dfsg1.orig.tar.xz dpkg-source: info: unpacking pymatgen_2025.2.18+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_lammps_regex_path.patch dpkg-source: info: applying skip_nonfree_testfile.patch dpkg-source: info: applying CVE-2022-42964_ReDOS_vulnerability.patch dpkg-source: info: applying skip_test_zsl_numba.patch dpkg-source: info: applying no_sphinx_markdown_builder.patch dpkg-source: info: applying tests_init.patch dpkg-source: info: applying tests_pass_or_skip.patch dpkg-source: info: applying docs_index.patch dpkg-source: info: applying docs_libjs_local.patch dpkg-source: info: applying test_files_writing.patch dpkg-source: info: applying test_tolerance.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24528/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 28 15:38 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/24528/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/24528/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=48fb0995fa3f4ac296bb8d9a5b1d20e3 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=24528 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8q5kFGv0/pbuilderrc_8ybG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8q5kFGv0/b2 --logfile b2/build.log pymatgen_2025.2.18+dfsg1-4.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/24528/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2025.2.18~), dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2025.1.9~), python3-networkx (>= 3~), python3-numpy (>= 1.25.0~), python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 5.0.0~), python3-pybtex (>= 0.24.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-vtk9 | python3-paraview, python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.33.3~), python3-openbabel (>= 3.1.1~), packmol, dh-sequence-sphinxdoc, libjs-jquery, libjs-mathjax, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19765 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pymatgen-test-files (>= 2025.2.18~); however: Package pymatgen-test-files is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-frozendict; however: Package python3-frozendict is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 3.8~); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 2025.1.9~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 3~); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.25.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-palettable (>= 3.3.3~); however: Package python3-palettable is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 2~); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-plotly (>= 5.0.0~); however: Package python3-plotly is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex (>= 0.24.0~); however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-requests (>= 2.32~); however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml (>= 0.17.0~); however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.13.0~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.5.0~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy (>= 1.6.2~); however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate (>= 0.9~); however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm (>= 4.60~); however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.4~); however: Package python3-uncertainties is not installed. pbuilder-satisfydepends-dummy depends on python3-joblib (>= 1~); however: Package python3-joblib is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.23.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4 (>= 4.9.1~); however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-vtk9 | python3-paraview; however: Package python3-vtk9 is not installed. Package python3-paraview is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 3.11.0~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-netcdf4 (>= 1.6.5~); however: Package python3-netcdf4 is not installed. pbuilder-satisfydepends-dummy depends on python3-phonopy (>= 2.33.3~); however: Package python3-phonopy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel (>= 3.1.1~); however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on packmol; however: Package packmol is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} hwloc-nox{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglew2.2{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libhwloc15{a} libice6{a} libicu72{a} libidn2-0{a} libimagequant0{a} libinchi1.07{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} liblzf1{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmpich12{a} libmtdev1t64{a} libnetcdf22{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libogg0{a} libopenbabel7{a} libopengl0{a} libopenjp2-7{a} libp11-kit0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libproj25{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5widgets5t64{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libslurm42t64{a} libsm6{a} libssh2-1t64{a} libsymspg2{a} libsz2{a} libtasn1-6{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libtheoradec1{a} libtheoraenc1{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libvtk9.3{a} libvtk9.3-qt{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} mpich{a} netbase{a} openssl{a} packmol{a} po-debconf{a} procps{a} proj-data{a} pybuild-plugin-pyproject{a} pymatgen-test-files{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-annotated-types{a} python3-ase{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-bs4{a} python3-bson{a} python3-build{a} python3-certifi{a} python3-cftime{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-dnspython{a} python3-docutils{a} python3-email-validator{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozendict{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-monty{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-nbformat{a} python3-netcdf4{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-openbabel{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-phonopy{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-pybtex{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-spglib{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-vtk9{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libhwloc-plugins libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libmpich-dev libpaper-utils libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python-monty-doc python3-bottleneck python3-bson-ext python3-cryptography python3-cssselect python3-fqdn python3-gdal python3-h2 python3-html5lib python3-httpcore python3-httpx python3-isoduration python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pydot python3-pygraphviz python3-pymatgen python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-uritemplate python3-webcolors qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 tcl wget xdg-user-dirs 0 packages upgraded, 359 newly installed, 0 to remove and 0 not upgraded. Need to get 514 MB of archives. After unpacking 1968 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 12.0.0 [28.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-1 [28.1 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 python3-numpy-dev i386 1:2.2.3+ds-2+b1 [145 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:2.2.3+ds-2+b1 [5060 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20241223 [164 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.47-1 [289 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+24 [217 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.16-1 [834 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 62 http://deb.debian.org/debian unstable/main i386 cython3 i386 3.0.11+dfsg-2+b1 [2467 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-3 [539 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 69 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 fontconfig i386 2.15.0-2 [463 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 fonts-lyx all 2.4.3-1 [190 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.12.0-1 [177 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 hwloc-nox i386 2.12.0-1 [232 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libaec0 i386 1.1.3-1+b1 [25.0 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 112 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.12.1-3 [411 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.12.1-3 [415 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libdbus-1-3 i386 1.16.2-1 [191 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libdouble-conversion3 i386 3.3.1-1 [45.7 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libdrm-common all 2.4.124-1 [8180 B] Get: 130 http://deb.debian.org/debian unstable/main i386 libdrm2 i386 2.4.124-1 [41.8 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 libdrm-amdgpu1 i386 2.4.124-1 [25.2 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 libpciaccess0 i386 0.17-3+b3 [53.8 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 libdrm-intel1 i386 2.4.124-1 [66.9 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 libedit2 i386 3.1-20250104-1 [98.1 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 libwayland-server0 i386 1.23.1-3 [36.1 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 libz3-4 i386 4.13.3-1 [9211 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 libllvm19 i386 1:19.1.7-1+b1 [30.4 MB] Get: 138 http://deb.debian.org/debian unstable/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 libsensors5 i386 1:3.6.0-10+b1 [35.8 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 libx11-xcb1 i386 2:1.8.10-2 [241 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 libxcb-dri3-0 i386 1.17.0-2+b1 [107 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 libxcb-present0 i386 1.17.0-2+b1 [106 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 libxcb-randr0 i386 1.17.0-2+b1 [118 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 libxcb-sync1 i386 1.17.0-2+b1 [109 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 libxcb-xfixes0 i386 1.17.0-2+b1 [110 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 libxshmfence1 i386 1.3-1+b3 [9000 B] Get: 147 http://deb.debian.org/debian unstable/main i386 mesa-libgallium i386 25.0.0-1 [9838 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 libgbm1 i386 25.0.0-1 [44.9 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 libwayland-client0 i386 1.23.1-3 [27.4 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 libegl-mesa0 i386 25.0.0-1 [133 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 libevdev2 i386 1.13.3+dfsg-1 [30.4 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 libgpg-error0 i386 1.51-3 [87.3 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 libgcrypt20 i386 1.11.0-7 [799 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 libglvnd0 i386 1.7.0-1+b2 [44.1 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 libxcb-glx0 i386 1.17.0-2+b1 [124 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 libxxf86vm1 i386 1:1.1.4-1+b4 [20.1 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 libvulkan1 i386 1.4.304.0-1 [139 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 libgl1-mesa-dri i386 25.0.0-1 [43.6 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 libglx-mesa0 i386 25.0.0-1 [145 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 libglx0 i386 1.7.0-1+b2 [36.8 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 libgl1 i386 1.7.0-1+b2 [82.7 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 libgl2ps1.4 i386 1.4.2+dfsg1-2 [42.0 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 libglew2.2 i386 2.2.0-4+b2 [163 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.83.4-1 [1582 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 libgudev-1.0-0 i386 238-6 [14.9 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 libsz2 i386 1.1.3-1+b1 [8128 B] Get: 171 http://deb.debian.org/debian unstable/main i386 libhdf5-310 i386 1.14.5+repack-3 [1327 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 libhdf5-hl-310 i386 1.14.5+repack-3 [81.6 kB] Get: 173 http://deb.debian.org/debian unstable/main i386 libice6 i386 2:1.1.1-1 [67.8 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 libinchi1.07 i386 1.07.3+dfsg-1 [555 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 libwacom-common all 2.14.0-1 [103 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 libwacom9 i386 2.14.0-1 [27.0 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 libinput-bin i386 1.27.1-1 [26.3 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 libmtdev1t64 i386 1.1.7-1 [23.1 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 libinput10 i386 1.27.1-1 [151 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3.1 [170 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 186 http://deb.debian.org/debian unstable/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 190 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 liblzf1 i386 3.6-4+b3 [9876 B] Get: 195 http://deb.debian.org/debian unstable/main i386 libmaeparser1 i386 1.3.1-1+b2 [99.3 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 libmd4c0 i386 0.5.2-2+b1 [49.2 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 libmpich12 i386 4.2.1-5 [1519 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 libnetcdf22 i386 1:4.9.3-1 [570 kB] Get: 199 http://deb.debian.org/debian unstable/main i386 libogg0 i386 1.3.5-3+b2 [24.6 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 libopenbabel7 i386 3.1.1+dfsg-11+b3 [3372 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.3-1 [215 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 libpcre2-16-0 i386 10.45-1 [278 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 proj-data all 9.5.1-1 [6284 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 libproj25 i386 9.5.1-1 [1514 kB] Get: 208 http://deb.debian.org/debian unstable/main i386 libpython3.13 i386 3.13.2-1 [2199 kB] Get: 209 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 210 http://deb.debian.org/debian unstable/main i386 libpython3.13-dev i386 3.13.2-1 [5181 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.13.2-1 [10.3 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 libpython3-all-dev i386 3.13.2-1 [1068 B] Get: 213 http://deb.debian.org/debian unstable/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 shared-mime-info i386 2.4-5+b2 [761 kB] Get: 215 http://deb.debian.org/debian unstable/main i386 libqt5core5t64 i386 5.15.15+dfsg-4 [2724 kB] Get: 216 http://deb.debian.org/debian unstable/main i386 libqt5dbus5t64 i386 5.15.15+dfsg-4 [238 kB] Get: 217 http://deb.debian.org/debian unstable/main i386 libegl1 i386 1.7.0-1+b2 [36.4 kB] Get: 218 http://deb.debian.org/debian unstable/main i386 libqt5network5t64 i386 5.15.15+dfsg-4 [770 kB] Get: 219 http://deb.debian.org/debian unstable/main i386 libsm6 i386 2:1.2.4-1 [35.9 kB] Get: 220 http://deb.debian.org/debian unstable/main i386 libxcb-icccm4 i386 0.4.2-1 [28.2 kB] Get: 221 http://deb.debian.org/debian unstable/main i386 libxcb-util1 i386 0.4.1-1 [23.8 kB] Get: 222 http://deb.debian.org/debian unstable/main i386 libxcb-image0 i386 0.4.0-2+b2 [22.7 kB] Get: 223 http://deb.debian.org/debian unstable/main i386 libxcb-keysyms1 i386 0.4.1-1 [16.9 kB] Get: 224 http://deb.debian.org/debian unstable/main i386 libxcb-render-util0 i386 0.3.10-1 [18.8 kB] Get: 225 http://deb.debian.org/debian unstable/main i386 libxcb-shape0 i386 1.17.0-2+b1 [106 kB] Get: 226 http://deb.debian.org/debian unstable/main i386 libxcb-xinerama0 i386 1.17.0-2+b1 [105 kB] Get: 227 http://deb.debian.org/debian unstable/main i386 libxcb-xinput0 i386 1.17.0-2+b1 [133 kB] Get: 228 http://deb.debian.org/debian unstable/main i386 libxcb-xkb1 i386 1.17.0-2+b1 [131 kB] Get: 229 http://deb.debian.org/debian unstable/main i386 xkb-data all 2.42-1 [790 kB] Get: 230 http://deb.debian.org/debian unstable/main i386 libxkbcommon0 i386 1.7.0-2 [118 kB] Get: 231 http://deb.debian.org/debian unstable/main i386 libxkbcommon-x11-0 i386 1.7.0-2 [17.0 kB] Get: 232 http://deb.debian.org/debian unstable/main i386 libqt5gui5t64 i386 5.15.15+dfsg-4 [6051 kB] Get: 233 http://deb.debian.org/debian unstable/main i386 libqt5widgets5t64 i386 5.15.15+dfsg-4 [2677 kB] Get: 234 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 235 http://deb.debian.org/debian unstable/main i386 libslurm42t64 i386 24.11.1-1 [754 kB] Get: 236 http://deb.debian.org/debian unstable/main i386 libsymspg2 i386 2.5.0-2 [203 kB] Get: 237 http://deb.debian.org/debian unstable/main i386 libtbbbind-2-5 i386 2022.0.0-2 [14.6 kB] Get: 238 http://deb.debian.org/debian unstable/main i386 libtbbmalloc2 i386 2022.0.0-2 [49.0 kB] Get: 239 http://deb.debian.org/debian unstable/main i386 libtbb12 i386 2022.0.0-2 [93.9 kB] Get: 240 http://deb.debian.org/debian unstable/main i386 libtheoradec1 i386 1.2.0~alpha1+dfsg-5 [56.6 kB] Get: 241 http://deb.debian.org/debian unstable/main i386 libtheoraenc1 i386 1.2.0~alpha1+dfsg-5 [106 kB] Get: 242 http://deb.debian.org/debian unstable/main i386 libopengl0 i386 1.7.0-1+b2 [29.3 kB] Get: 243 http://deb.debian.org/debian unstable/main i386 libvtk9.3 i386 9.3.0+dfsg1-4 [24.4 MB] Get: 244 http://deb.debian.org/debian unstable/main i386 libvtk9.3-qt i386 9.3.0+dfsg1-4 [188 kB] Get: 245 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 246 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 247 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB] Get: 248 http://deb.debian.org/debian unstable/main i386 libyaml-0-2 i386 0.2.5-2 [55.8 kB] Get: 249 http://deb.debian.org/debian unstable/main i386 mpich i386 4.2.1-5 [236 kB] Get: 250 http://deb.debian.org/debian unstable/main i386 mpi-default-bin i386 1.18 [2576 B] Get: 251 http://deb.debian.org/debian unstable/main i386 packmol i386 1:20.15.3-1 [115 kB] Get: 252 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 253 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 254 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 255 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 256 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 257 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 258 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 259 http://deb.debian.org/debian unstable/main i386 pymatgen-test-files all 2025.2.18-1 [211 MB] Get: 260 http://deb.debian.org/debian unstable/main i386 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 261 http://deb.debian.org/debian unstable/main i386 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 262 http://deb.debian.org/debian unstable/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 263 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.2-1 [1048 B] Get: 264 http://deb.debian.org/debian unstable/main i386 python3.13-dev i386 3.13.2-1 [505 kB] Get: 265 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.13.2-1 [26.1 kB] Get: 266 http://deb.debian.org/debian unstable/main i386 python3-all-dev i386 3.13.2-1 [1068 B] Get: 267 http://deb.debian.org/debian unstable/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 268 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 269 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.14.1-4+b1 [17.0 MB] Get: 270 http://deb.debian.org/debian unstable/main i386 python3-spglib i386 2.5.0-2 [53.3 kB] Get: 271 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 272 http://deb.debian.org/debian unstable/main i386 python3-pil i386 11.1.0-5+b1 [518 kB] Get: 273 http://deb.debian.org/debian unstable/main i386 python3.12-tk i386 3.12.9-1 [114 kB] Get: 274 http://deb.debian.org/debian unstable/main i386 python3.13-tk i386 3.13.2-1 [104 kB] Get: 275 http://deb.debian.org/debian unstable/main i386 python3-tk i386 3.13.1-1+b1 [9756 B] Get: 276 http://deb.debian.org/debian unstable/main i386 python3-pil.imagetk i386 11.1.0-5+b1 [81.9 kB] Get: 277 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 278 http://deb.debian.org/debian unstable/main i386 python3-contourpy i386 1.3.1-1+b1 [223 kB] Get: 279 http://deb.debian.org/debian unstable/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 280 http://deb.debian.org/debian unstable/main i386 python3-brotli i386 1.1.0-2+b7 [318 kB] Get: 281 http://deb.debian.org/debian unstable/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 282 http://deb.debian.org/debian unstable/main i386 python3-tz all 2025.1-3 [4004 B] Get: 283 http://deb.debian.org/debian unstable/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 284 http://deb.debian.org/debian unstable/main i386 python3-fs all 2.4.16-6 [95.1 kB] Get: 285 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.3.1-1+b1 [1257 kB] Get: 286 http://deb.debian.org/debian unstable/main i386 python3-lz4 i386 4.4.0+dfsg-1+b1 [25.5 kB] Get: 287 http://deb.debian.org/debian unstable/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 288 http://deb.debian.org/debian unstable/main i386 python3-sympy all 1.13.3-5 [4148 kB] Get: 289 http://deb.debian.org/debian unstable/main i386 python3-attr all 25.1.0-1 [68.7 kB] Get: 290 http://deb.debian.org/debian unstable/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 291 http://deb.debian.org/debian unstable/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 292 http://deb.debian.org/debian unstable/main i386 python3-fonttools i386 4.55.3-2+b1 [1442 kB] Get: 293 http://deb.debian.org/debian unstable/main i386 python3-kiwisolver i386 1.4.7-3+b1 [69.7 kB] Get: 294 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.8.3-7+b1 [23.0 MB] Get: 295 http://deb.debian.org/debian unstable/main i386 python3-ase all 3.23.0-1 [1698 kB] Get: 296 http://deb.debian.org/debian unstable/main i386 python3-babel all 2.17.0-1 [117 kB] Get: 297 http://deb.debian.org/debian unstable/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Get: 298 http://deb.debian.org/debian unstable/main i386 python3-bs4 all 4.13.3-1 [166 kB] Get: 299 http://deb.debian.org/debian unstable/main i386 python3-bson all 4.10.1-5 [87.1 kB] Get: 300 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 301 http://deb.debian.org/debian unstable/main i386 python3-cftime i386 1.6.4-1+b4 [213 kB] Get: 302 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 303 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 304 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 305 http://deb.debian.org/debian unstable/main i386 python3-dnspython all 2.7.0-1 [164 kB] Get: 306 http://deb.debian.org/debian unstable/main i386 python3-roman all 5.0-1 [10.6 kB] Get: 307 http://deb.debian.org/debian unstable/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 308 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 309 http://deb.debian.org/debian unstable/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 310 http://deb.debian.org/debian unstable/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 311 http://deb.debian.org/debian unstable/main i386 python3-frozendict all 2.4.6-1 [13.0 kB] Get: 312 http://deb.debian.org/debian unstable/main i386 python3-h5py-serial i386 3.13.0-1+b1 [1031 kB] Get: 313 http://deb.debian.org/debian unstable/main i386 python3-h5py all 3.13.0-1 [15.0 kB] Get: 314 http://deb.debian.org/debian unstable/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 315 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 316 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 317 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 318 http://deb.debian.org/debian unstable/main i386 python3-joblib all 1.4.2-3 [216 kB] Get: 319 http://deb.debian.org/debian unstable/main i386 python3-rpds-py i386 0.21.0-2+b1 [275 kB] Get: 320 http://deb.debian.org/debian unstable/main i386 python3-referencing all 0.35.1-2 [23.5 kB] Get: 321 http://deb.debian.org/debian unstable/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 322 http://deb.debian.org/debian unstable/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 323 http://deb.debian.org/debian unstable/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 324 http://deb.debian.org/debian unstable/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 325 http://deb.debian.org/debian unstable/main i386 python3-latexcodec all 3.0.0-1 [17.5 kB] Get: 326 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 327 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 328 http://deb.debian.org/debian unstable/main i386 python3-pydantic-core i386 2.27.2-1+b2 [1454 kB] Get: 329 http://deb.debian.org/debian unstable/main i386 python3-pydantic i386 2.10.6-1 [346 kB] Get: 330 http://deb.debian.org/debian unstable/main i386 python3-tqdm all 4.67.1-2 [91.1 kB] Get: 331 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml.clib i386 0.2.12+ds-1+b1 [137 kB] Get: 332 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 333 http://deb.debian.org/debian unstable/main i386 python3-monty all 2025.1.9-1 [45.7 kB] Get: 334 http://deb.debian.org/debian unstable/main i386 python3-mpi4py i386 4.0.3-1+b1 [664 kB] Get: 335 http://deb.debian.org/debian unstable/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 336 http://deb.debian.org/debian unstable/main i386 python3-netcdf4 i386 1.7.2-1+b4 [600 kB] Get: 337 http://deb.debian.org/debian unstable/main i386 python3-networkx all 3.2.1-5 [13.0 MB] Get: 338 http://deb.debian.org/debian unstable/main i386 python3-openbabel i386 3.1.1+dfsg-11+b3 [575 kB] Get: 339 http://deb.debian.org/debian unstable/main i386 python3-palettable all 3.3.3-1 [69.7 kB] Get: 340 http://deb.debian.org/debian unstable/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] Get: 341 http://deb.debian.org/debian unstable/main i386 python3-phonopy i386 2.35.0-1 [333 kB] Get: 342 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 343 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 344 http://deb.debian.org/debian unstable/main i386 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 345 http://deb.debian.org/debian unstable/main i386 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 346 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 347 http://deb.debian.org/debian unstable/main i386 python3-six all 1.17.0-1 [16.5 kB] Get: 348 http://deb.debian.org/debian unstable/main i386 python3-pybtex all 0.24.0-4 [74.6 kB] Get: 349 http://deb.debian.org/debian unstable/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 350 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 351 http://deb.debian.org/debian unstable/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 352 http://deb.debian.org/debian unstable/main i386 sphinx-common all 8.1.3-5 [617 kB] Get: 353 http://deb.debian.org/debian unstable/main i386 python3-sphinx all 8.1.3-5 [468 kB] Get: 354 http://deb.debian.org/debian unstable/main i386 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 355 http://deb.debian.org/debian unstable/main i386 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 356 http://deb.debian.org/debian unstable/main i386 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] Get: 357 http://deb.debian.org/debian unstable/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 358 http://deb.debian.org/debian unstable/main i386 python3-uncertainties all 3.2.2-1 [54.7 kB] Get: 359 http://deb.debian.org/debian unstable/main i386 python3-vtk9 i386 9.3.0+dfsg1-4 [7240 kB] Fetched 514 MB in 15s (34.3 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19765 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_i386.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:i386 (3.13.2-1) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20125 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-1_i386.deb ... Unpacking python3-minimal (3.13.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up proj-data (9.5.1-1) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libgpg-error0:i386 (1.51-3) ... Setting up libxcb-xinput0:i386 (1.17.0-2+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:i386 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-2) ... Setting up libglvnd0:i386 (1.7.0-1+b2) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libxcb-glx0:i386 (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:i386 (1.1.0-2+b7) ... Setting up libedit2:i386 (3.1-20250104-1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libxcb-keysyms1:i386 (0.4.1-1) ... Setting up libxcb-shape0:i386 (1.17.0-2+b1) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-10) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up libdeflate0:i386 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:i386 (1.11.0-7) ... Setting up libqhull-r8.0:i386 (2020.2-6+b2) ... Setting up libxcb-render-util0:i386 (0.3.10-1) ... Setting up xkb-data (2.42-1) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up libxcb-icccm4:i386 (0.4.2-1) ... Setting up libcom-err2:i386 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:i386 (2.1-6.1+b2) ... Setting up libpcre2-16-0:i386 (10.45-1) ... Setting up libaec0:i386 (1.1.3-1+b1) ... Setting up libopengl0:i386 (1.7.0-1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up python-babel-localedata (2.17.0-1) ... 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Setting up libgfortran5:i386 (14.2.0-17) ... Setting up libvulkan1:i386 (1.4.304.0-1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.6.0-2) ... Setting up libwebp7:i386 (1.5.0-0.1) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up libmpich12:i386 (4.2.1-5) ... Setting up libmtdev1t64:i386 (1.1.7-1) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:i386 (1.3-1+b3) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libxcb-randr0:i386 (1.17.0-2+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libjson-perl (4.10000-1) ... Setting up libtasn1-6:i386 (4.20.0-2) ... Setting up libmd4c0:i386 (0.5.2-2+b1) ... Setting up libopenjp2-7:i386 (2.5.3-1) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:i386 (1.9.1-1) ... Setting up sgml-base (1.31) ... 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Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libxcb-dri3-0:i386 (1.17.0-2+b1) ... Setting up libllvm19:i386 (1:19.1.7-1+b1) ... Setting up libwayland-server0:i386 (1.23.1-3) ... Setting up libx11-xcb1:i386 (2:1.8.10-2) ... Setting up libice6:i386 (2:1.1.1-1) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:i386 (1.5.0-0.1) ... Setting up hwloc-nox (2.12.0-1) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up libidn2-0:i386 (2.3.7-2+b1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b4) ... Setting up libtbbbind-2-5:i386 (2022.0.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:i386 (2.83.4-1) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up packmol (1:20.15.3-1) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:i386 (0.25.5-3) ... Setting up libxkbcommon-x11-0:i386 (1.7.0-2) ... Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:i386 (2.4.124-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:i386 (1.1.35-1.1+b1) ... 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Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.1.0-1) ... Setting up mesa-libgallium:i386 (25.0.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libqt5dbus5t64:i386 (5.15.15+dfsg-4) ... Setting up python3-scipy (1.14.1-4+b1) ... Setting up libpython3-dev:i386 (3.13.2-1) ... Setting up python3-pydantic-core (2.27.2-1+b2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:i386 (8.12.1-3) ... Setting up python3-joblib (1.4.2-3) ... Setting up libgbm1:i386 (25.0.0-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.4.0+dfsg-1+b1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-pandas-lib:i386 (2.2.3+dfsg-8+b1) ... Setting up python3-tqdm (4.67.1-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libgl1-mesa-dri:i386 (25.0.0-1) ... Setting up libqt5network5t64:i386 (5.15.15+dfsg-4) ... Setting up python3-ruamel.yaml.clib (0.2.12+ds-1+b1) ... Setting up python3-frozendict (2.4.6-1) ... Setting up libcurl3t64-gnutls:i386 (8.12.1-3) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-latexcodec (3.0.0-1) ... Setting up python3-all (3.13.2-1) ... Setting up libopenbabel7 (3.1.1+dfsg-11+b3) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-tk:i386 (3.13.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-bs4 (4.13.3-1) ... Setting up python3-fs (2.4.16-6) ... Setting up python3-pil:i386 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libtheoraenc1:i386 (1.2.0~alpha1+dfsg-5) ... Setting up libegl-mesa0:i386 (25.0.0-1) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-pil.imagetk:i386 (11.1.0-5+b1) ... Setting up libpython3-all-dev:i386 (3.13.2-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pydantic (2.10.6-1) ... Setting up python3-dev (3.13.2-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-cftime (1.6.4-1+b4) ... Setting up python3-ruamel.yaml (0.18.10+ds-1) ... Setting up libhdf5-310:i386 (1.14.5+repack-3) ... Setting up python3-monty (2025.1.9-1) ... Setting up libegl1:i386 (1.7.0-1+b2) ... Setting up python3-referencing (0.35.1-2) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-all-dev (3.13.2-1) ... Setting up libhdf5-hl-310:i386 (1.14.5+repack-3) ... Setting up libglx-mesa0:i386 (25.0.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libglx0:i386 (1.7.0-1+b2) ... Setting up python3-openbabel (3.1.1+dfsg-11+b3) ... Setting up libproj25:i386 (9.5.1-1) ... Setting up libnetcdf22:i386 (1:4.9.3-1) ... Setting up python3-h5py-serial (3.13.0-1+b1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-palettable (3.3.3-1) ... Setting up libgl1:i386 (1.7.0-1+b2) ... Setting up python3-h5py (3.13.0-1) ... Setting up libglew2.2:i386 (2.2.0-4+b2) ... Setting up python3-pybtex (0.24.0-4) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-netcdf4 (1.7.2-1+b4) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libqt5gui5t64:i386 (5.15.15+dfsg-4) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up libvtk9.3:i386 (9.3.0+dfsg1-4) ... Setting up libqt5widgets5t64:i386 (5.15.15+dfsg-4) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up libvtk9.3-qt:i386 (9.3.0+dfsg1-4) ... Setting up python3-vtk9 (9.3.0+dfsg1-4) ... /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' patn = re.compile (" \S") Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-2+b1) ... Setting up python3-matplotlib (3.8.3-7+b1) ... Setting up python3-ase (3.23.0-1) ... Setting up python3-phonopy (2.35.0-1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.1.3-5) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/24528/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/24528/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pymatgen-2025.2.18+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pymatgen_2025.2.18+dfsg1-4_source.changes dpkg-buildpackage: info: source package pymatgen dpkg-buildpackage: info: source version 2025.2.18+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from pymatgen-2025.2.18+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' rm -f pymatgen/optimization/linear_assignment.c pymatgen/optimization/neighbors.c pymatgen/util/coord_cython.c rm -rf pd.json .hypothesis tmp_dir make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-i686-cpython-313/pymatgen copying src/pymatgen/dao.py -> build/lib.linux-i686-cpython-313/pymatgen creating build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_cross_section.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_analyze.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_potcar.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_plot.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_structure.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/get_environment.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_config.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_dos.py -> build/lib.linux-i686-cpython-313/pymatgen/cli copying src/pymatgen/cli/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/cli creating build/lib.linux-i686-cpython-313/pymatgen/optimization copying src/pymatgen/optimization/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/optimization creating build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/gulp_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/critic2_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/bader_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/enumlib_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/mcsqs_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/chargemol_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/vampire_caller.py -> build/lib.linux-i686-cpython-313/pymatgen/command_line creating build/lib.linux-i686-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/materials.py -> build/lib.linux-i686-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/filters.py -> build/lib.linux-i686-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/transmuters.py -> build/lib.linux-i686-cpython-313/pymatgen/alchemy creating build/lib.linux-i686-cpython-313/pymatgen/apps copying src/pymatgen/apps/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/apps creating build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap2.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/bandstructure.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/cohp.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/core.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/dos.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/plotter.py -> build/lib.linux-i686-cpython-313/pymatgen/electronic_structure creating build/lib.linux-i686-cpython-313/pymatgen/ext copying src/pymatgen/ext/matproj.py -> build/lib.linux-i686-cpython-313/pymatgen/ext copying src/pymatgen/ext/cod.py -> build/lib.linux-i686-cpython-313/pymatgen/ext copying src/pymatgen/ext/optimade.py -> build/lib.linux-i686-cpython-313/pymatgen/ext copying src/pymatgen/ext/matproj_legacy.py -> build/lib.linux-i686-cpython-313/pymatgen/ext creating build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/compatibility.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/entry_tools.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/mixing_scheme.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/correction_calculator.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/exp_entries.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/computed_entries.py -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/entries creating build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/ion.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/tensors.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/xcfunc.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/surface.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/libxcfunc.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/periodic_table.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/units.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/trajectory.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/spectrum.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/molecular_orbitals.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/composition.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/interface.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/structure.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/sites.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/operations.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/bonds.py -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/lattice.py -> build/lib.linux-i686-cpython-313/pymatgen/core creating build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/maggroups.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/groups.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/site_symmetries.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/analyzer.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/bandstructure.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/kpath.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/settings.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/structure.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/symmetry creating build/lib.linux-i686-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_vtk.py -> build/lib.linux-i686-cpython-313/pymatgen/vis copying src/pymatgen/vis/plotters.py -> build/lib.linux-i686-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_chemview.py -> build/lib.linux-i686-cpython-313/pymatgen/vis copying src/pymatgen/vis/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/vis creating build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/excitation.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cost.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/dimensionality.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_matcher.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/surface_analysis.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ewald.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo_sensitivity.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/fragmenter.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/energy_models.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/xps.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasirrho.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasiharmonic.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_matcher.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/phase_diagram.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/prototypes.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_structure_comparator.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/local_env.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_valence.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/functional_groups.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/wulff.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/reaction_calculator.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/pourbaix_diagram.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/thermochemistry.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/eos.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/chempot_diagram.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_dissociation.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/transition_state.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/adsorption.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/interface_reactions.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/nmr.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/disorder.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/graphs.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_analyzer.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis creating build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/string.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/provenance.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/numba.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/num.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/io_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/joblib.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/plotting.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/misc.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/typing.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/testing.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/coord.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/due.py -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/graph_hashing.py -> build/lib.linux-i686-cpython-313/pymatgen/util creating build/lib.linux-i686-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/standard_transformations.py -> build/lib.linux-i686-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/advanced_transformations.py -> build/lib.linux-i686-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/site_transformations.py -> build/lib.linux-i686-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/transformation_abc.py -> build/lib.linux-i686-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/transformations creating build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/lmto.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/common.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/icet.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/nwchem.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/multiwfn.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/openff.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/ase.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/pwscf.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/xcrysden.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/res.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/cssr.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/optimade.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/cif.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/zeopp.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/jarvis.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/prismatic.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/xyz.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/packmol.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/core.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/babel.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/template.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/xr.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/phonopy.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/wannier90.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/shengbte.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/atat.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/adf.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/fiesta.py -> build/lib.linux-i686-cpython-313/pymatgen/io copying src/pymatgen/io/gaussian.py -> build/lib.linux-i686-cpython-313/pymatgen/io creating build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/gruneisen.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/bandstructure.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/ir_spectra.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/thermal_displacements.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/dos.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/plotter.py -> build/lib.linux-i686-cpython-313/pymatgen/phonon creating build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/analyzer.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/battery_abc.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/insertion_battery.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/conversion_battery.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/plotter.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/battery creating build/lib.linux-i686-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/queen.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/hive.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/apps/borg creating build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/zsl.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces creating build/lib.linux-i686-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/slme.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/solar creating build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/stress.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/strain.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/elastic.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity creating build/lib.linux-i686-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/ferroelectricity creating build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/xrd.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/core.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/tem.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction creating build/lib.linux-i686-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/spillage.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/topological creating build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/jahnteller.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/analyzer.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/heisenberg.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism creating build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv copying src/pymatgen/analysis/chemenv/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv creating build/lib.linux-i686-cpython-313/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/grain.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/gb creating build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-i686-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/spectrum.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/xas creating build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils creating build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity creating build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments creating build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.linux-i686-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/exciting creating build/lib.linux-i686-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/sets.py -> build/lib.linux-i686-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/utils.py -> build/lib.linux-i686-cpython-313/pymatgen/io/qchem creating build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/sets.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/help.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/optics.py -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp creating build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructure.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jelstep.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/generic_tags.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/_output_utils.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructures.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jminsettings.py -> build/lib.linux-i686-cpython-313/pymatgen/io/jdftx creating build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/data.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/generators.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/sets.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/utils.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps creating build/lib.linux-i686-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/parsers.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims copying src/pymatgen/io/aims/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims creating build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abiobjects.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/variable.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abitimer.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/pseudos.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/netcdf.py -> build/lib.linux-i686-cpython-313/pymatgen/io/abinit creating build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/sets.py -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/feff creating build/lib.linux-i686-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/pwmat creating build/lib.linux-i686-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/sets.py -> build/lib.linux-i686-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/utils.py -> build/lib.linux-i686-cpython-313/pymatgen/io/cp2k creating build/lib.linux-i686-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/xtb creating build/lib.linux-i686-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/inputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/outputs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/lobsterenv.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster creating build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/bs.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/base.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/core.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/magnetism.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/__init__.py -> build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets copying src/pymatgen/py.typed -> build/lib.linux-i686-cpython-313/pymatgen copying src/pymatgen/entries/exp_compounds.json.gz -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/calc_compounds.json.gz -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/MPCompatibility.yaml -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/MP2020Compatibility.yaml -> build/lib.linux-i686-cpython-313/pymatgen/entries copying src/pymatgen/entries/MITCompatibility.yaml -> build/lib.linux-i686-cpython-313/pymatgen/entries creating build/lib.linux-i686-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/g_els.json -> build/lib.linux-i686-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/nist_gas_gf.json -> build/lib.linux-i686-cpython-313/pymatgen/entries/data copying src/pymatgen/core/periodic_table.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/libxc_docs.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/bond_lengths.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/reconstructions_archive.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/func_groups.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/core/quad_data.json -> build/lib.linux-i686-cpython-313/pymatgen/core copying src/pymatgen/symmetry/symm_ops.json -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.json -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.yaml -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.yaml -> build/lib.linux-i686-cpython-313/pymatgen/symmetry copying src/pymatgen/vis/ElementColorSchemes.yaml -> build/lib.linux-i686-cpython-313/pymatgen/vis copying src/pymatgen/analysis/costdb_elements.csv -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi_data.csv -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/aflow_prototypes.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ionic_radii.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cn_opt_params.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bvparam_1991.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/icsd_bv.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/op_params.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis copying src/pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_chempot_layouts.json -> build/lib.linux-i686-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_pd_layouts.json -> build/lib.linux-i686-cpython-313/pymatgen/util creating build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/CsCl.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/He_BCC.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Sn.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SrTiO3.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TlBiSe2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/BaNiO3.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TiO2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li10GeP2S12.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Pb2TiZrO6.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/VO2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Graphite.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/K2O2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/NaFePO4.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/La2CoO4F.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SiO2.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/LiFePO4.json -> build/lib.linux-i686-cpython-313/pymatgen/util/structures copying src/pymatgen/analysis/solar/am1.5G.dat -> build/lib.linux-i686-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/incar_parameters.json -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE64Base.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE54Base.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps creating build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/minimization.template -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/md.template -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/msd.template -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/thermalization.template -> build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/feff/MPXANESSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPELNESSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/feff creating build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis running build_ext Compiling src/pymatgen/optimization/linear_assignment.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/linear_assignment.pyx building 'pymatgen.optimization.linear_assignment' extension creating build/temp.linux-i686-cpython-313/src/pymatgen/optimization i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/optimization/linear_assignment.c -o build/temp.linux-i686-cpython-313/src/pymatgen/optimization/linear_assignment.o In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/linear_assignment.c:1240: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/src/pymatgen/optimization/linear_assignment.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/pymatgen/optimization/linear_assignment.cpython-313-i386-linux-gnu.so performance hint: src/pymatgen/util/coord_cython.pyx:36:5: Exception check on 'dot_2d' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d' to allow an error code to be returned. performance hint: src/pymatgen/util/coord_cython.pyx:51:5: Exception check on 'dot_2d_mod' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d_mod' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d_mod' to allow an error code to be returned. warning: src/pymatgen/util/coord_cython.pyx:219:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: src/pymatgen/util/coord_cython.pyx:268:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling src/pymatgen/util/coord_cython.pyx because it changed. [1/1] Cythonizing src/pymatgen/util/coord_cython.pyx building 'pymatgen.util.coord_cython' extension creating build/temp.linux-i686-cpython-313/src/pymatgen/util i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/util/coord_cython.c -o build/temp.linux-i686-cpython-313/src/pymatgen/util/coord_cython.o In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/util/coord_cython.c:1240: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/src/pymatgen/util/coord_cython.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/pymatgen/util/coord_cython.cpython-313-i386-linux-gnu.so performance hint: src/pymatgen/optimization/neighbors.pyx:525:5: Exception check on 'get_bounds' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_bounds' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_bounds' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:552:5: Exception check on 'get_frac_coords' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_frac_coords' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_frac_coords' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:564:5: Exception check on 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:582:5: Exception check on 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:610:5: Exception check on 'get_max_rep' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_rep' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_rep' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:626:5: Exception check on 'get_reciprocal_lattice' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_reciprocal_lattice' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_reciprocal_lattice' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:641:5: Exception check on 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:675:5: Exception check on 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:702:5: Exception check on 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:726:5: Exception check on 'compute_cube_index' will always require the GIL to be acquired. Possible solutions: 1. Declare 'compute_cube_index' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'compute_cube_index' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:743:5: Exception check on 'three_to_one' will always require the GIL to be acquired. Possible solutions: 1. Declare 'three_to_one' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'three_to_one' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:778:5: Exception check on 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:496:27: Exception check after calling 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:541:19: Exception check after calling 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:561:14: Exception check after calling 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:562:10: Exception check after calling 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:635:23: Exception check after calling 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:655:9: Exception check after calling 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. Compiling src/pymatgen/optimization/neighbors.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/neighbors.pyx building 'pymatgen.optimization.neighbors' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/optimization/neighbors.c -o build/temp.linux-i686-cpython-313/src/pymatgen/optimization/neighbors.o In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/neighbors.c:1241: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_pf_8pymatgen_12optimization_9neighbors_find_points_in_spheres': src/pymatgen/optimization/neighbors.c:21919:97: warning: passing argument 3 of '__pyx_f_8pymatgen_12optimization_9neighbors_get_bounds' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 21919 | __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__pyx_v_frac_coords, __pyx_v_max_rep, (&(*((__pyx_t_5numpy_int64_t const *) ( /* dim=0 */ ((char *) (((__pyx_t_5numpy_int64_t const *) __pyx_v_pbc.data) + __pyx_t_30)) )))), __pyx_v_max_bounds, __pyx_v_min_bounds); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 172, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3263:98: note: expected '__pyx_t_5numpy_int64_t *' {aka 'long long int *'} but argument is of type 'const __pyx_t_5numpy_int64_t *' {aka 'const long long int *'} 3263 | static void __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__Pyx_memviewslice, double *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *); /*proto*/ | ^~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_f_8pymatgen_12optimization_9neighbors_recip_component': src/pymatgen/optimization/neighbors.c:25983:54: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25983 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3272:63: note: expected 'double *' but argument is of type 'const double *' 3272 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25983:158: warning: passing argument 2 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25983 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3272:73: note: expected 'double *' but argument is of type 'const double *' 3272 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25993:66: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_inner' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25993 | __pyx_t_3 = __pyx_f_8pymatgen_12optimization_9neighbors_inner((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a1.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__pyx_t_3 == ((double)-1) && __Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 656, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3271:65: note: expected 'double *' but argument is of type 'const double *' 3271 | static double __pyx_f_8pymatgen_12optimization_9neighbors_inner(double *, double *); /*proto*/ | ^~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.2.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/src/pymatgen/optimization/neighbors.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/pymatgen/optimization/neighbors.cpython-313-i386-linux-gnu.so installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/pymatgen creating build/bdist.linux-i686/wheel/pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/feff_plot_cross_section.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg_analyze.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg_potcar.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg_plot.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg_structure.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/get_environment.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/pmg_config.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/feff_plot_dos.py -> build/bdist.linux-i686/wheel/./pymatgen/cli copying build/lib.linux-i686-cpython-313/pymatgen/cli/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/cli creating build/bdist.linux-i686/wheel/pymatgen/optimization copying build/lib.linux-i686-cpython-313/pymatgen/optimization/linear_assignment.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pymatgen/optimization copying build/lib.linux-i686-cpython-313/pymatgen/optimization/neighbors.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pymatgen/optimization copying build/lib.linux-i686-cpython-313/pymatgen/optimization/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/optimization copying build/lib.linux-i686-cpython-313/pymatgen/py.typed -> build/bdist.linux-i686/wheel/./pymatgen creating build/bdist.linux-i686/wheel/pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/gulp_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/critic2_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/bader_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/enumlib_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/mcsqs_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/chargemol_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line copying build/lib.linux-i686-cpython-313/pymatgen/command_line/vampire_caller.py -> build/bdist.linux-i686/wheel/./pymatgen/command_line creating build/bdist.linux-i686/wheel/pymatgen/alchemy copying build/lib.linux-i686-cpython-313/pymatgen/alchemy/materials.py -> build/bdist.linux-i686/wheel/./pymatgen/alchemy copying build/lib.linux-i686-cpython-313/pymatgen/alchemy/filters.py -> build/bdist.linux-i686/wheel/./pymatgen/alchemy copying build/lib.linux-i686-cpython-313/pymatgen/alchemy/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/alchemy copying build/lib.linux-i686-cpython-313/pymatgen/alchemy/transmuters.py -> build/bdist.linux-i686/wheel/./pymatgen/alchemy creating build/bdist.linux-i686/wheel/pymatgen/apps creating build/bdist.linux-i686/wheel/pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/analyzer.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/battery_abc.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/insertion_battery.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/conversion_battery.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/battery/plotter.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/battery copying build/lib.linux-i686-cpython-313/pymatgen/apps/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/apps creating build/bdist.linux-i686/wheel/pymatgen/apps/borg copying build/lib.linux-i686-cpython-313/pymatgen/apps/borg/queen.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/borg copying build/lib.linux-i686-cpython-313/pymatgen/apps/borg/hive.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/borg copying build/lib.linux-i686-cpython-313/pymatgen/apps/borg/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/apps/borg creating build/bdist.linux-i686/wheel/pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/boltztrap.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/boltztrap2.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/bandstructure.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/cohp.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/core.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/dos.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure copying build/lib.linux-i686-cpython-313/pymatgen/electronic_structure/plotter.py -> build/bdist.linux-i686/wheel/./pymatgen/electronic_structure creating build/bdist.linux-i686/wheel/pymatgen/ext copying build/lib.linux-i686-cpython-313/pymatgen/ext/matproj.py -> build/bdist.linux-i686/wheel/./pymatgen/ext copying build/lib.linux-i686-cpython-313/pymatgen/ext/cod.py -> build/bdist.linux-i686/wheel/./pymatgen/ext copying build/lib.linux-i686-cpython-313/pymatgen/ext/optimade.py -> build/bdist.linux-i686/wheel/./pymatgen/ext copying build/lib.linux-i686-cpython-313/pymatgen/ext/matproj_legacy.py -> build/bdist.linux-i686/wheel/./pymatgen/ext creating build/bdist.linux-i686/wheel/pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/MPCompatibility.yaml -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/MP2020Compatibility.yaml -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/exp_compounds.json.gz -> build/bdist.linux-i686/wheel/./pymatgen/entries creating build/bdist.linux-i686/wheel/pymatgen/entries/data copying build/lib.linux-i686-cpython-313/pymatgen/entries/data/g_els.json -> build/bdist.linux-i686/wheel/./pymatgen/entries/data copying build/lib.linux-i686-cpython-313/pymatgen/entries/data/nist_gas_gf.json -> build/bdist.linux-i686/wheel/./pymatgen/entries/data copying build/lib.linux-i686-cpython-313/pymatgen/entries/compatibility.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/entry_tools.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/calc_compounds.json.gz -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/MITCompatibility.yaml -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/mixing_scheme.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/correction_calculator.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/exp_entries.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/computed_entries.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/entries/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/entries copying build/lib.linux-i686-cpython-313/pymatgen/dao.py -> build/bdist.linux-i686/wheel/./pymatgen creating build/bdist.linux-i686/wheel/pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/ion.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/periodic_table.json -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/tensors.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/xcfunc.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/surface.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/libxc_docs.json -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/libxcfunc.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/bond_lengths.json -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/periodic_table.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/units.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/trajectory.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/spectrum.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/molecular_orbitals.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/composition.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/interface.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/structure.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/reconstructions_archive.json -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/sites.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/operations.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/func_groups.json -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/bonds.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/lattice.py -> build/bdist.linux-i686/wheel/./pymatgen/core copying build/lib.linux-i686-cpython-313/pymatgen/core/quad_data.json -> build/bdist.linux-i686/wheel/./pymatgen/core creating build/bdist.linux-i686/wheel/pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/maggroups.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/symm_ops.json -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/groups.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/symm_data.yaml -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/site_symmetries.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/analyzer.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/bandstructure.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/kpath.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/settings.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/symm_ops.yaml -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/symm_data.json -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/structure.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/symmetry copying build/lib.linux-i686-cpython-313/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/bdist.linux-i686/wheel/./pymatgen/symmetry creating build/bdist.linux-i686/wheel/pymatgen/vis copying build/lib.linux-i686-cpython-313/pymatgen/vis/ElementColorSchemes.yaml -> build/bdist.linux-i686/wheel/./pymatgen/vis copying build/lib.linux-i686-cpython-313/pymatgen/vis/structure_vtk.py -> build/bdist.linux-i686/wheel/./pymatgen/vis copying build/lib.linux-i686-cpython-313/pymatgen/vis/plotters.py -> build/bdist.linux-i686/wheel/./pymatgen/vis copying build/lib.linux-i686-cpython-313/pymatgen/vis/structure_chemview.py -> build/bdist.linux-i686/wheel/./pymatgen/vis copying build/lib.linux-i686-cpython-313/pymatgen/vis/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/vis creating build/bdist.linux-i686/wheel/pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/excitation.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/costdb_elements.csv -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/interfaces copying build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-i686-cpython-313/pymatgen/analysis/interfaces/zsl.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-i686-cpython-313/pymatgen/analysis/cost.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/hhi_data.csv -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/solar copying build/lib.linux-i686-cpython-313/pymatgen/analysis/solar/am1.5G.dat -> build/bdist.linux-i686/wheel/./pymatgen/analysis/solar copying build/lib.linux-i686-cpython-313/pymatgen/analysis/solar/slme.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/solar copying build/lib.linux-i686-cpython-313/pymatgen/analysis/solar/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/solar copying build/lib.linux-i686-cpython-313/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/dimensionality.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_matcher.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/cn_opt_params.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/elasticity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity/stress.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity/strain.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/elasticity/elastic.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/surface_analysis.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/ewald.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/piezo_sensitivity.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/fragmenter.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/aflow_prototypes.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/ferroelectricity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/ferroelectricity/polarization.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/ferroelectricity/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/energy_models.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/xps.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/xrd.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/neutron.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/core.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/tem.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/diffraction creating build/bdist.linux-i686/wheel/pymatgen/analysis/topological copying build/lib.linux-i686-cpython-313/pymatgen/analysis/topological/spillage.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/topological copying build/lib.linux-i686-cpython-313/pymatgen/analysis/topological/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/topological copying build/lib.linux-i686-cpython-313/pymatgen/analysis/bvparam_1991.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/quasirrho.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/vesta_cutoffs.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/quasiharmonic.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/ionic_radii.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/magnetism copying build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism/jahnteller.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism/analyzer.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism/heisenberg.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-i686-cpython-313/pymatgen/analysis/magnetism/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/magnetism creating build/bdist.linux-i686/wheel/pymatgen/analysis/chemenv creating build/bdist.linux-i686/wheel/pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/math_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/func_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv creating build/bdist.linux-i686/wheel/pymatgen/analysis/chemenv/connectivity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/connectivity creating build/bdist.linux-i686/wheel/pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-i686/wheel/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-i686-cpython-313/pymatgen/analysis/hhi.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/molecule_matcher.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/phase_diagram.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/prototypes.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/molecule_structure_comparator.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/gb copying build/lib.linux-i686-cpython-313/pymatgen/analysis/gb/grain.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/gb copying build/lib.linux-i686-cpython-313/pymatgen/analysis/gb/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/gb copying build/lib.linux-i686-cpython-313/pymatgen/analysis/local_env.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/bond_valence.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/functional_groups.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/icsd_bv.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/wulff.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/bonds_jmol_ob.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/op_params.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/reaction_calculator.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/pourbaix_diagram.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/thermochemistry.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/eos.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/chempot_diagram.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/bond_dissociation.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/transition_state.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/adsorption.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/interface_reactions.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/structure_prediction creating build/bdist.linux-i686/wheel/pymatgen/analysis/structure_prediction/data copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/data/lambda.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/substitutor.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-i686-cpython-313/pymatgen/analysis/nmr.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/disorder.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/graphs.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/piezo.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis copying build/lib.linux-i686-cpython-313/pymatgen/analysis/structure_analyzer.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis creating build/bdist.linux-i686/wheel/pymatgen/analysis/xas copying build/lib.linux-i686-cpython-313/pymatgen/analysis/xas/spectrum.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/xas copying build/lib.linux-i686-cpython-313/pymatgen/analysis/xas/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/analysis/xas creating build/bdist.linux-i686/wheel/pymatgen/util creating build/bdist.linux-i686/wheel/pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/CsCl.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/He_BCC.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Sn.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/SrTiO3.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/TlBiSe2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Si_SiO2_Interface.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/BaNiO3.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Si.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/TiO2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Li2O.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Li10GeP2S12.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Pb2TiZrO6.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/VO2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Li3V2(PO4)3.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Graphite.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/K2O2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/Li2O2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/NaFePO4.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/La2CoO4F.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/SiO2.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/structures/LiFePO4.json -> build/bdist.linux-i686/wheel/./pymatgen/util/structures copying build/lib.linux-i686-cpython-313/pymatgen/util/string.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/plotly_interface_rxn_layouts.json -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/provenance.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/numba.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/num.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/io_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/plotly_chempot_layouts.json -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/joblib.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/coord_cython.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/plotly_pd_layouts.json -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/plotting.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/misc.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/typing.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/testing.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/coord.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/due.py -> build/bdist.linux-i686/wheel/./pymatgen/util copying build/lib.linux-i686-cpython-313/pymatgen/util/graph_hashing.py -> build/bdist.linux-i686/wheel/./pymatgen/util creating build/bdist.linux-i686/wheel/pymatgen/transformations copying build/lib.linux-i686-cpython-313/pymatgen/transformations/standard_transformations.py -> build/bdist.linux-i686/wheel/./pymatgen/transformations copying build/lib.linux-i686-cpython-313/pymatgen/transformations/advanced_transformations.py -> build/bdist.linux-i686/wheel/./pymatgen/transformations copying build/lib.linux-i686-cpython-313/pymatgen/transformations/site_transformations.py -> build/bdist.linux-i686/wheel/./pymatgen/transformations copying build/lib.linux-i686-cpython-313/pymatgen/transformations/transformation_abc.py -> build/bdist.linux-i686/wheel/./pymatgen/transformations copying build/lib.linux-i686-cpython-313/pymatgen/transformations/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/transformations creating build/bdist.linux-i686/wheel/pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/lmto.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/exciting copying build/lib.linux-i686-cpython-313/pymatgen/io/exciting/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/exciting copying build/lib.linux-i686-cpython-313/pymatgen/io/exciting/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/exciting copying build/lib.linux-i686-cpython-313/pymatgen/io/common.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/qchem copying build/lib.linux-i686-cpython-313/pymatgen/io/qchem/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/qchem copying build/lib.linux-i686-cpython-313/pymatgen/io/qchem/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/qchem copying build/lib.linux-i686-cpython-313/pymatgen/io/qchem/sets.py -> build/bdist.linux-i686/wheel/./pymatgen/io/qchem copying build/lib.linux-i686-cpython-313/pymatgen/io/qchem/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/qchem copying build/lib.linux-i686-cpython-313/pymatgen/io/qchem/utils.py -> build/bdist.linux-i686/wheel/./pymatgen/io/qchem creating build/bdist.linux-i686/wheel/pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/PBE64Base.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/VASPIncarBase.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/PBE54Base.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/vdW_parameters.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/sets.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/incar_parameters.json -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MITRelaxSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/help.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MPRelaxSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MVLGWSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/vasp/optics.py -> build/bdist.linux-i686/wheel/./pymatgen/io/vasp copying build/lib.linux-i686-cpython-313/pymatgen/io/icet.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/joutstructure.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/jelstep.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/generic_tags.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/_output_utils.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/joutstructures.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx copying build/lib.linux-i686-cpython-313/pymatgen/io/jdftx/jminsettings.py -> build/bdist.linux-i686/wheel/./pymatgen/io/jdftx creating build/bdist.linux-i686/wheel/pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/CoeffsDataType.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/data.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps creating build/bdist.linux-i686/wheel/pymatgen/io/lammps/templates copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates/minimization.template -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates/md.template -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates/msd.template -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/templates/thermalization.template -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/generators.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/sets.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/lammps/utils.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lammps copying build/lib.linux-i686-cpython-313/pymatgen/io/nwchem.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/multiwfn.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/aims copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/parsers.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims creating build/bdist.linux-i686/wheel/pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets/bs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets/base.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets/core.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets/magnetism.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/sets/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims/sets copying build/lib.linux-i686-cpython-313/pymatgen/io/aims/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/aims creating build/bdist.linux-i686/wheel/pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/abiobjects.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/variable.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/abitimer.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/pseudos.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/abinit/netcdf.py -> build/bdist.linux-i686/wheel/./pymatgen/io/abinit copying build/lib.linux-i686-cpython-313/pymatgen/io/openff.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/ase.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/pwscf.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/xcrysden.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/res.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/cssr.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/MPXANESSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/MPELNESSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/MPEXAFSSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/sets.py -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/feff/MPEXELFSSet.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/feff copying build/lib.linux-i686-cpython-313/pymatgen/io/optimade.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/cif.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/zeopp.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/jarvis.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/pwmat copying build/lib.linux-i686-cpython-313/pymatgen/io/pwmat/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/pwmat copying build/lib.linux-i686-cpython-313/pymatgen/io/pwmat/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/pwmat copying build/lib.linux-i686-cpython-313/pymatgen/io/pwmat/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/pwmat copying build/lib.linux-i686-cpython-313/pymatgen/io/prismatic.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/xyz.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/packmol.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/core.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/babel.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/template.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/xr.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/cp2k/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/cp2k/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/cp2k/sets.py -> build/bdist.linux-i686/wheel/./pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/cp2k/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/cp2k/utils.py -> build/bdist.linux-i686/wheel/./pymatgen/io/cp2k copying build/lib.linux-i686-cpython-313/pymatgen/io/phonopy.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/wannier90.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/xtb copying build/lib.linux-i686-cpython-313/pymatgen/io/xtb/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/xtb copying build/lib.linux-i686-cpython-313/pymatgen/io/xtb/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/xtb copying build/lib.linux-i686-cpython-313/pymatgen/io/xtb/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/xtb copying build/lib.linux-i686-cpython-313/pymatgen/io/shengbte.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/atat.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/io/lobster copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/inputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/outputs.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobsterenv.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster creating build/bdist.linux-i686/wheel/pymatgen/io/lobster/lobster_basis copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-i686-cpython-313/pymatgen/io/lobster/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/io/lobster copying build/lib.linux-i686-cpython-313/pymatgen/io/adf.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/fiesta.py -> build/bdist.linux-i686/wheel/./pymatgen/io copying build/lib.linux-i686-cpython-313/pymatgen/io/gaussian.py -> build/bdist.linux-i686/wheel/./pymatgen/io creating build/bdist.linux-i686/wheel/pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/gruneisen.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/bandstructure.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/ir_spectra.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/thermal_displacements.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/dos.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/__init__.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon copying build/lib.linux-i686-cpython-313/pymatgen/phonon/plotter.py -> build/bdist.linux-i686/wheel/./pymatgen/phonon running install_egg_info running egg_info creating src/pymatgen.egg-info writing src/pymatgen.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:162: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to src/pymatgen.egg-info/dependency_links.txt writing entry points to src/pymatgen.egg-info/entry_points.txt writing requirements to src/pymatgen.egg-info/requires.txt writing top-level names to src/pymatgen.egg-info/top_level.txt writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' reading manifest file 'src/pymatgen.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' Copying src/pymatgen.egg-info to build/bdist.linux-i686/wheel/./pymatgen-2025.2.18.egg-info running install_scripts creating build/bdist.linux-i686/wheel/pymatgen-2025.2.18.dist-info/WHEEL creating '/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/.tmp-jqh4ngyh/pymatgen-2025.2.18-cp313-cp313-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'pymatgen/dao.py' adding 'pymatgen/py.typed' adding 'pymatgen/alchemy/__init__.py' adding 'pymatgen/alchemy/filters.py' adding 'pymatgen/alchemy/materials.py' adding 'pymatgen/alchemy/transmuters.py' adding 'pymatgen/analysis/adsorption.py' adding 'pymatgen/analysis/aflow_prototypes.json' adding 'pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv' adding 'pymatgen/analysis/bond_dissociation.py' adding 'pymatgen/analysis/bond_valence.py' adding 'pymatgen/analysis/bonds_jmol_ob.yaml' adding 'pymatgen/analysis/bvparam_1991.yaml' adding 'pymatgen/analysis/chempot_diagram.py' adding 'pymatgen/analysis/cn_opt_params.yaml' adding 'pymatgen/analysis/cost.py' adding 'pymatgen/analysis/costdb_elements.csv' adding 'pymatgen/analysis/dimensionality.py' adding 'pymatgen/analysis/disorder.py' adding 'pymatgen/analysis/energy_models.py' adding 'pymatgen/analysis/eos.py' adding 'pymatgen/analysis/ewald.py' adding 'pymatgen/analysis/excitation.py' adding 'pymatgen/analysis/fragmenter.py' adding 'pymatgen/analysis/functional_groups.py' adding 'pymatgen/analysis/graphs.py' adding 'pymatgen/analysis/hhi.py' adding 'pymatgen/analysis/hhi_data.csv' adding 'pymatgen/analysis/icsd_bv.yaml' adding 'pymatgen/analysis/interface_reactions.py' adding 'pymatgen/analysis/ionic_radii.json' adding 'pymatgen/analysis/local_env.py' adding 'pymatgen/analysis/molecule_matcher.py' adding 'pymatgen/analysis/molecule_structure_comparator.py' adding 'pymatgen/analysis/nmr.py' adding 'pymatgen/analysis/op_params.yaml' adding 'pymatgen/analysis/phase_diagram.py' adding 'pymatgen/analysis/piezo.py' adding 'pymatgen/analysis/piezo_sensitivity.py' adding 'pymatgen/analysis/pourbaix_diagram.py' adding 'pymatgen/analysis/prototypes.py' adding 'pymatgen/analysis/quasiharmonic.py' adding 'pymatgen/analysis/quasirrho.py' adding 'pymatgen/analysis/reaction_calculator.py' adding 'pymatgen/analysis/structure_analyzer.py' adding 'pymatgen/analysis/structure_matcher.py' adding 'pymatgen/analysis/surface_analysis.py' adding 'pymatgen/analysis/thermochemistry.py' adding 'pymatgen/analysis/transition_state.py' adding 'pymatgen/analysis/vesta_cutoffs.yaml' adding 'pymatgen/analysis/wulff.py' adding 'pymatgen/analysis/xps.py' adding 'pymatgen/analysis/chemenv/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/connected_components.py' adding 'pymatgen/analysis/chemenv/connectivity/connectivity_finder.py' adding 'pymatgen/analysis/chemenv/connectivity/environment_nodes.py' adding 'pymatgen/analysis/chemenv/connectivity/structure_connectivity.py' adding 'pymatgen/analysis/chemenv/coordination_environments/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py' adding 'pymatgen/analysis/chemenv/coordination_environments/structure_environments.py' adding 'pymatgen/analysis/chemenv/coordination_environments/voronoi.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt' adding 'pymatgen/analysis/chemenv/utils/__init__.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_config.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_errors.py' adding 'pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py' adding 'pymatgen/analysis/chemenv/utils/defs_utils.py' adding 'pymatgen/analysis/chemenv/utils/func_utils.py' adding 'pymatgen/analysis/chemenv/utils/graph_utils.py' adding 'pymatgen/analysis/chemenv/utils/math_utils.py' adding 'pymatgen/analysis/chemenv/utils/scripts_utils.py' adding 'pymatgen/analysis/diffraction/__init__.py' adding 'pymatgen/analysis/diffraction/atomic_scattering_params.json' adding 'pymatgen/analysis/diffraction/core.py' adding 'pymatgen/analysis/diffraction/neutron.py' adding 'pymatgen/analysis/diffraction/neutron_scattering_length.json' adding 'pymatgen/analysis/diffraction/tem.py' adding 'pymatgen/analysis/diffraction/xrd.py' adding 'pymatgen/analysis/elasticity/__init__.py' adding 'pymatgen/analysis/elasticity/elastic.py' adding 'pymatgen/analysis/elasticity/strain.py' adding 'pymatgen/analysis/elasticity/stress.py' adding 'pymatgen/analysis/ferroelectricity/__init__.py' adding 'pymatgen/analysis/ferroelectricity/polarization.py' adding 'pymatgen/analysis/gb/__init__.py' adding 'pymatgen/analysis/gb/grain.py' adding 'pymatgen/analysis/interfaces/__init__.py' adding 'pymatgen/analysis/interfaces/coherent_interfaces.py' adding 'pymatgen/analysis/interfaces/substrate_analyzer.py' adding 'pymatgen/analysis/interfaces/zsl.py' adding 'pymatgen/analysis/magnetism/__init__.py' adding 'pymatgen/analysis/magnetism/analyzer.py' adding 'pymatgen/analysis/magnetism/default_magmoms.yaml' adding 'pymatgen/analysis/magnetism/heisenberg.py' adding 'pymatgen/analysis/magnetism/jahnteller.py' adding 'pymatgen/analysis/solar/__init__.py' adding 'pymatgen/analysis/solar/am1.5G.dat' adding 'pymatgen/analysis/solar/slme.py' adding 'pymatgen/analysis/structure_prediction/DLS_bond_params.yaml' adding 'pymatgen/analysis/structure_prediction/__init__.py' adding 'pymatgen/analysis/structure_prediction/dopant_predictor.py' adding 'pymatgen/analysis/structure_prediction/substitution_probability.py' adding 'pymatgen/analysis/structure_prediction/substitutor.py' adding 'pymatgen/analysis/structure_prediction/volume_predictor.py' adding 'pymatgen/analysis/structure_prediction/data/lambda.json' adding 'pymatgen/analysis/structure_prediction/data/pair_correlation.json' adding 'pymatgen/analysis/topological/__init__.py' adding 'pymatgen/analysis/topological/spillage.py' adding 'pymatgen/analysis/xas/__init__.py' adding 'pymatgen/analysis/xas/spectrum.py' adding 'pymatgen/apps/__init__.py' adding 'pymatgen/apps/battery/__init__.py' adding 'pymatgen/apps/battery/analyzer.py' adding 'pymatgen/apps/battery/battery_abc.py' adding 'pymatgen/apps/battery/conversion_battery.py' adding 'pymatgen/apps/battery/insertion_battery.py' adding 'pymatgen/apps/battery/plotter.py' adding 'pymatgen/apps/borg/__init__.py' adding 'pymatgen/apps/borg/hive.py' adding 'pymatgen/apps/borg/queen.py' adding 'pymatgen/cli/__init__.py' adding 'pymatgen/cli/feff_plot_cross_section.py' adding 'pymatgen/cli/feff_plot_dos.py' adding 'pymatgen/cli/get_environment.py' adding 'pymatgen/cli/pmg.py' adding 'pymatgen/cli/pmg_analyze.py' adding 'pymatgen/cli/pmg_config.py' adding 'pymatgen/cli/pmg_plot.py' adding 'pymatgen/cli/pmg_potcar.py' adding 'pymatgen/cli/pmg_structure.py' adding 'pymatgen/command_line/__init__.py' adding 'pymatgen/command_line/bader_caller.py' adding 'pymatgen/command_line/chargemol_caller.py' adding 'pymatgen/command_line/critic2_caller.py' adding 'pymatgen/command_line/enumlib_caller.py' adding 'pymatgen/command_line/gulp_caller.py' adding 'pymatgen/command_line/mcsqs_caller.py' adding 'pymatgen/command_line/vampire_caller.py' adding 'pymatgen/core/__init__.py' adding 'pymatgen/core/bond_lengths.json' adding 'pymatgen/core/bonds.py' adding 'pymatgen/core/composition.py' adding 'pymatgen/core/func_groups.json' adding 'pymatgen/core/interface.py' adding 'pymatgen/core/ion.py' adding 'pymatgen/core/lattice.py' adding 'pymatgen/core/libxc_docs.json' adding 'pymatgen/core/libxcfunc.py' adding 'pymatgen/core/molecular_orbitals.py' adding 'pymatgen/core/operations.py' adding 'pymatgen/core/periodic_table.json' adding 'pymatgen/core/periodic_table.py' adding 'pymatgen/core/quad_data.json' adding 'pymatgen/core/reconstructions_archive.json' adding 'pymatgen/core/sites.py' adding 'pymatgen/core/spectrum.py' adding 'pymatgen/core/structure.py' adding 'pymatgen/core/surface.py' adding 'pymatgen/core/tensors.py' adding 'pymatgen/core/trajectory.py' adding 'pymatgen/core/units.py' adding 'pymatgen/core/xcfunc.py' adding 'pymatgen/electronic_structure/__init__.py' adding 'pymatgen/electronic_structure/bandstructure.py' adding 'pymatgen/electronic_structure/boltztrap.py' adding 'pymatgen/electronic_structure/boltztrap2.py' adding 'pymatgen/electronic_structure/cohp.py' adding 'pymatgen/electronic_structure/core.py' adding 'pymatgen/electronic_structure/dos.py' adding 'pymatgen/electronic_structure/plotter.py' adding 'pymatgen/entries/MITCompatibility.yaml' adding 'pymatgen/entries/MP2020Compatibility.yaml' adding 'pymatgen/entries/MPCompatibility.yaml' adding 'pymatgen/entries/__init__.py' adding 'pymatgen/entries/calc_compounds.json.gz' adding 'pymatgen/entries/compatibility.py' adding 'pymatgen/entries/computed_entries.py' adding 'pymatgen/entries/correction_calculator.py' adding 'pymatgen/entries/entry_tools.py' adding 'pymatgen/entries/exp_compounds.json.gz' adding 'pymatgen/entries/exp_entries.py' adding 'pymatgen/entries/mixing_scheme.py' adding 'pymatgen/entries/data/g_els.json' adding 'pymatgen/entries/data/nist_gas_gf.json' adding 'pymatgen/ext/cod.py' adding 'pymatgen/ext/matproj.py' adding 'pymatgen/ext/matproj_legacy.py' adding 'pymatgen/ext/optimade.py' adding 'pymatgen/io/adf.py' adding 'pymatgen/io/ase.py' adding 'pymatgen/io/atat.py' adding 'pymatgen/io/babel.py' adding 'pymatgen/io/cif.py' adding 'pymatgen/io/common.py' adding 'pymatgen/io/core.py' adding 'pymatgen/io/cssr.py' adding 'pymatgen/io/fiesta.py' adding 'pymatgen/io/gaussian.py' adding 'pymatgen/io/icet.py' adding 'pymatgen/io/jarvis.py' adding 'pymatgen/io/lmto.py' adding 'pymatgen/io/multiwfn.py' adding 'pymatgen/io/nwchem.py' adding 'pymatgen/io/openff.py' adding 'pymatgen/io/optimade.py' adding 'pymatgen/io/packmol.py' adding 'pymatgen/io/phonopy.py' adding 'pymatgen/io/prismatic.py' adding 'pymatgen/io/pwscf.py' adding 'pymatgen/io/res.py' adding 'pymatgen/io/shengbte.py' adding 'pymatgen/io/template.py' adding 'pymatgen/io/wannier90.py' adding 'pymatgen/io/xcrysden.py' adding 'pymatgen/io/xr.py' adding 'pymatgen/io/xyz.py' adding 'pymatgen/io/zeopp.py' adding 'pymatgen/io/abinit/__init__.py' adding 'pymatgen/io/abinit/abiobjects.py' adding 'pymatgen/io/abinit/abitimer.py' adding 'pymatgen/io/abinit/inputs.py' adding 'pymatgen/io/abinit/netcdf.py' adding 'pymatgen/io/abinit/pseudos.py' adding 'pymatgen/io/abinit/variable.py' adding 'pymatgen/io/aims/__init__.py' adding 'pymatgen/io/aims/inputs.py' adding 'pymatgen/io/aims/outputs.py' adding 'pymatgen/io/aims/parsers.py' adding 'pymatgen/io/aims/sets/__init__.py' adding 'pymatgen/io/aims/sets/base.py' adding 'pymatgen/io/aims/sets/bs.py' adding 'pymatgen/io/aims/sets/core.py' adding 'pymatgen/io/aims/sets/magnetism.py' adding 'pymatgen/io/cp2k/__init__.py' adding 'pymatgen/io/cp2k/inputs.py' adding 'pymatgen/io/cp2k/outputs.py' adding 'pymatgen/io/cp2k/sets.py' adding 'pymatgen/io/cp2k/utils.py' adding 'pymatgen/io/exciting/__init__.py' adding 'pymatgen/io/exciting/inputs.py' adding 'pymatgen/io/feff/MPELNESSet.yaml' adding 'pymatgen/io/feff/MPEXAFSSet.yaml' adding 'pymatgen/io/feff/MPEXELFSSet.yaml' adding 'pymatgen/io/feff/MPXANESSet.yaml' adding 'pymatgen/io/feff/__init__.py' adding 'pymatgen/io/feff/inputs.py' adding 'pymatgen/io/feff/outputs.py' adding 'pymatgen/io/feff/sets.py' adding 'pymatgen/io/jdftx/__init__.py' adding 'pymatgen/io/jdftx/_output_utils.py' adding 'pymatgen/io/jdftx/generic_tags.py' adding 'pymatgen/io/jdftx/inputs.py' adding 'pymatgen/io/jdftx/jdftxinfile_master_format.py' adding 'pymatgen/io/jdftx/jdftxinfile_ref_options.py' adding 'pymatgen/io/jdftx/jdftxoutfileslice.py' adding 'pymatgen/io/jdftx/jelstep.py' adding 'pymatgen/io/jdftx/jminsettings.py' adding 'pymatgen/io/jdftx/joutstructure.py' adding 'pymatgen/io/jdftx/joutstructures.py' adding 'pymatgen/io/jdftx/outputs.py' adding 'pymatgen/io/lammps/CoeffsDataType.yaml' adding 'pymatgen/io/lammps/__init__.py' adding 'pymatgen/io/lammps/data.py' adding 'pymatgen/io/lammps/generators.py' adding 'pymatgen/io/lammps/inputs.py' adding 'pymatgen/io/lammps/outputs.py' adding 'pymatgen/io/lammps/sets.py' adding 'pymatgen/io/lammps/utils.py' adding 'pymatgen/io/lammps/templates/md.template' adding 'pymatgen/io/lammps/templates/minimization.template' adding 'pymatgen/io/lammps/templates/msd.template' adding 'pymatgen/io/lammps/templates/thermalization.template' adding 'pymatgen/io/lobster/__init__.py' adding 'pymatgen/io/lobster/inputs.py' adding 'pymatgen/io/lobster/lobsterenv.py' adding 'pymatgen/io/lobster/outputs.py' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml' adding 'pymatgen/io/pwmat/__init__.py' adding 'pymatgen/io/pwmat/inputs.py' adding 'pymatgen/io/pwmat/outputs.py' adding 'pymatgen/io/qchem/__init__.py' adding 'pymatgen/io/qchem/inputs.py' adding 'pymatgen/io/qchem/outputs.py' adding 'pymatgen/io/qchem/sets.py' adding 'pymatgen/io/qchem/utils.py' adding 'pymatgen/io/vasp/MITRelaxSet.yaml' adding 'pymatgen/io/vasp/MP24RelaxSet.yaml' adding 'pymatgen/io/vasp/MPAbsorptionSet.yaml' adding 'pymatgen/io/vasp/MPHSERelaxSet.yaml' adding 'pymatgen/io/vasp/MPRelaxSet.yaml' adding 'pymatgen/io/vasp/MPSCANRelaxSet.yaml' adding 'pymatgen/io/vasp/MVLGWSet.yaml' adding 'pymatgen/io/vasp/MVLRelax52Set.yaml' adding 'pymatgen/io/vasp/MatPESStaticSet.yaml' adding 'pymatgen/io/vasp/PBE54Base.yaml' adding 'pymatgen/io/vasp/PBE64Base.yaml' adding 'pymatgen/io/vasp/VASPIncarBase.yaml' adding 'pymatgen/io/vasp/__init__.py' adding 'pymatgen/io/vasp/help.py' adding 'pymatgen/io/vasp/incar_parameters.json' adding 'pymatgen/io/vasp/inputs.py' adding 'pymatgen/io/vasp/optics.py' adding 'pymatgen/io/vasp/outputs.py' adding 'pymatgen/io/vasp/potcar-summary-stats.json.bz2' adding 'pymatgen/io/vasp/sets.py' adding 'pymatgen/io/vasp/vasp_potcar_file_hashes.json' adding 'pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json' adding 'pymatgen/io/vasp/vdW_parameters.yaml' adding 'pymatgen/io/xtb/__init__.py' adding 'pymatgen/io/xtb/inputs.py' adding 'pymatgen/io/xtb/outputs.py' adding 'pymatgen/optimization/__init__.py' adding 'pymatgen/optimization/linear_assignment.cpython-313-i386-linux-gnu.so' adding 'pymatgen/optimization/neighbors.cpython-313-i386-linux-gnu.so' adding 'pymatgen/phonon/__init__.py' adding 'pymatgen/phonon/bandstructure.py' adding 'pymatgen/phonon/dos.py' adding 'pymatgen/phonon/gruneisen.py' adding 'pymatgen/phonon/ir_spectra.py' adding 'pymatgen/phonon/plotter.py' adding 'pymatgen/phonon/thermal_displacements.py' adding 'pymatgen/symmetry/__init__.py' adding 'pymatgen/symmetry/analyzer.py' adding 'pymatgen/symmetry/bandstructure.py' adding 'pymatgen/symmetry/groups.py' adding 'pymatgen/symmetry/kpath.py' adding 'pymatgen/symmetry/maggroups.py' adding 'pymatgen/symmetry/settings.py' adding 'pymatgen/symmetry/site_symmetries.py' adding 'pymatgen/symmetry/structure.py' adding 'pymatgen/symmetry/symm_data.json' adding 'pymatgen/symmetry/symm_data.yaml' adding 'pymatgen/symmetry/symm_data_magnetic.sqlite' adding 'pymatgen/symmetry/symm_ops.json' adding 'pymatgen/symmetry/symm_ops.yaml' adding 'pymatgen/transformations/__init__.py' adding 'pymatgen/transformations/advanced_transformations.py' adding 'pymatgen/transformations/site_transformations.py' adding 'pymatgen/transformations/standard_transformations.py' adding 'pymatgen/transformations/transformation_abc.py' adding 'pymatgen/util/__init__.py' adding 'pymatgen/util/coord.py' adding 'pymatgen/util/coord_cython.cpython-313-i386-linux-gnu.so' adding 'pymatgen/util/due.py' adding 'pymatgen/util/graph_hashing.py' adding 'pymatgen/util/io_utils.py' adding 'pymatgen/util/joblib.py' adding 'pymatgen/util/misc.py' adding 'pymatgen/util/num.py' adding 'pymatgen/util/numba.py' adding 'pymatgen/util/plotly_chempot_layouts.json' adding 'pymatgen/util/plotly_interface_rxn_layouts.json' adding 'pymatgen/util/plotly_pd_layouts.json' adding 'pymatgen/util/plotting.py' adding 'pymatgen/util/provenance.py' adding 'pymatgen/util/string.py' adding 'pymatgen/util/testing.py' adding 'pymatgen/util/typing.py' adding 'pymatgen/util/structures/BaNiO3.json' adding 'pymatgen/util/structures/CsCl.json' adding 'pymatgen/util/structures/Graphite.json' adding 'pymatgen/util/structures/He_BCC.json' adding 'pymatgen/util/structures/K2O2.json' adding 'pymatgen/util/structures/La2CoO4F.json' adding 'pymatgen/util/structures/Li10GeP2S12.json' adding 'pymatgen/util/structures/Li2O.json' adding 'pymatgen/util/structures/Li2O2.json' adding 'pymatgen/util/structures/Li3V2(PO4)3.json' adding 'pymatgen/util/structures/LiFePO4.json' adding 'pymatgen/util/structures/NaFePO4.json' adding 'pymatgen/util/structures/Pb2TiZrO6.json' adding 'pymatgen/util/structures/Si.json' adding 'pymatgen/util/structures/SiO2.json' adding 'pymatgen/util/structures/Si_SiO2_Interface.json' adding 'pymatgen/util/structures/Sn.json' adding 'pymatgen/util/structures/SrTiO3.json' adding 'pymatgen/util/structures/TiO2.json' adding 'pymatgen/util/structures/TlBiSe2.json' adding 'pymatgen/util/structures/VO2.json' adding 'pymatgen/vis/ElementColorSchemes.yaml' adding 'pymatgen/vis/__init__.py' adding 'pymatgen/vis/plotters.py' adding 'pymatgen/vis/structure_chemview.py' adding 'pymatgen/vis/structure_vtk.py' adding 'pymatgen-2025.2.18.dist-info/LICENSE' adding 'pymatgen-2025.2.18.dist-info/METADATA' adding 'pymatgen-2025.2.18.dist-info/WHEEL' adding 'pymatgen-2025.2.18.dist-info/entry_points.txt' adding 'pymatgen-2025.2.18.dist-info/top_level.txt' adding 'pymatgen-2025.2.18.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built pymatgen-2025.2.18-cp313-cp313-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' PYTHONPATH=/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build \ sphinx-build docs/apidoc build/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry 'assets' does not exist WARNING: favicon file 'favicon.ico' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 50 source files that are out of date updating environment: [new config] 50 added, 0 changed, 0 removed reading sources... [ 2%] index The 道 of Pymatgen 1. Great code enables great materials science. 2. Comprehensive tests ensure robustness. 3. Clear documentation leads to more usage. 4. More usage improves code quality (and increases citations). 5. Even complex scientific ideas can be broken down into simple interfaces. 6. Deep (Hulk-level) understanding is often necessary to develop the right interface design. 7. Slow and accurate is better than fast and wrong. 8. But efficiency matters for core classes. 9. Code entropy always increases in a closed system. 10. Constant refactoring is the hallmark of an open platform. --- First Coder reading sources... [ 4%] modules reading sources... [ 6%] pymatgen reading sources... [ 8%] pymatgen.alchemy reading sources... [ 10%] pymatgen.analysis Matplotlib created a temporary cache directory at /tmp/matplotlib-t675k8ol because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 12%] pymatgen.analysis.chemenv reading sources... [ 14%] pymatgen.analysis.chemenv.connectivity reading sources... [ 16%] pymatgen.analysis.chemenv.coordination_environments reading sources... [ 18%] pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files reading sources... [ 20%] pymatgen.analysis.chemenv.utils reading sources... [ 22%] pymatgen.analysis.diffraction reading sources... [ 24%] pymatgen.analysis.elasticity reading sources... [ 26%] pymatgen.analysis.ferroelectricity reading sources... [ 28%] pymatgen.analysis.gb reading sources... [ 30%] pymatgen.analysis.interfaces reading sources... [ 32%] pymatgen.analysis.magnetism reading sources... [ 34%] pymatgen.analysis.solar reading sources... [ 36%] pymatgen.analysis.structure_prediction reading sources... [ 38%] pymatgen.analysis.topological reading sources... [ 40%] pymatgen.analysis.xas reading sources... [ 42%] pymatgen.apps reading sources... [ 44%] pymatgen.apps.battery reading sources... [ 46%] pymatgen.apps.borg reading sources... [ 48%] pymatgen.cli reading sources... [ 50%] pymatgen.command_line reading sources... [ 52%] pymatgen.core reading sources... [ 54%] pymatgen.electronic_structure reading sources... [ 56%] pymatgen.entries reading sources... [ 58%] pymatgen.ext reading sources... [ 60%] pymatgen.io /usr/lib/python3.13/importlib/__init__.py:88: UserWarning: To use the pymatgen.io.openff module install openff-toolkit and openff-unitswith `conda install -c conda-forge openff-toolkit openff-units`. return _bootstrap._gcd_import(name[level:], package, level) reading sources... [ 62%] pymatgen.io.abinit reading sources... [ 64%] pymatgen.io.aims reading sources... [ 66%] pymatgen.io.aims.sets reading sources... [ 68%] pymatgen.io.cp2k reading sources... [ 70%] pymatgen.io.exciting reading sources... [ 72%] pymatgen.io.feff reading sources... [ 74%] pymatgen.io.jdftx reading sources... [ 76%] pymatgen.io.lammps reading sources... [ 78%] pymatgen.io.lobster reading sources... [ 80%] pymatgen.io.pwmat reading sources... [ 82%] pymatgen.io.qchem reading sources... [ 84%] pymatgen.io.vasp reading sources... [ 86%] pymatgen.io.xtb reading sources... [ 88%] pymatgen.optimization reading sources... [ 90%] pymatgen.phonon reading sources... [ 92%] pymatgen.symmetry reading sources... [ 94%] pymatgen.transformations reading sources... [ 96%] pymatgen.util reading sources... [ 98%] pymatgen.util.testing reading sources... [100%] pymatgen.vis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.rst:4: WARNING: duplicate object description of pymatgen, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/dao.py:docstring of pymatgen.dao:1: WARNING: duplicate object description of pymatgen.dao, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:18: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/dimensionality.py:docstring of pymatgen.analysis.dimensionality.get_dimensionality_cheon:29: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.from_local_env_strategy:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.insert_node:15: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interface_reactions.py:docstring of pymatgen.analysis.interface_reactions.InterfacialReactivity.labels:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:28: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:34: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:39: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CutOffDictNN:17: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:9: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:20: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:25: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:36: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:39: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:40: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:46: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:54: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_all_voronoi_polyhedra:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_voronoi_polyhedra:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/nmr.py:docstring of pymatgen.analysis.nmr.ElectricFieldGradient.coupling_constant:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram.num2str:6: WARNING: Field list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDEntry.energy:1: WARNING: duplicate object description of pymatgen.analysis.phase_diagram.PDEntry.energy, other instance in pymatgen.analysis, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:27: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:5: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.order_phase_diagram:17: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_analyzer.py:docstring of pymatgen.analysis.structure_analyzer.VoronoiAnalyzer:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher.get_transformation:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:6: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:28: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/wulff.py:docstring of pymatgen.analysis.wulff.WulffShape.shape_factor:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:8: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:12: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:26: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:29: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:33: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:10: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator.cell_intensity:1: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic.generate_pseudo:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization.get_same_branch_polarization_data:35: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:11: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:26: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:15: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:18: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/enumlib_caller.py:docstring of pymatgen.command_line.enumlib_caller:22: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:13: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/command_line/vampire_caller.py:docstring of pymatgen.command_line.vampire_caller.VampireCaller:74: ERROR: Unknown directive type "todo". .. todo:: * Create input files in a temp folder that gets cleaned up after run terminates [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.obtain_all_bond_lengths:14: ERROR: Unknown directive type "todo". .. todo:: it's better to avoid using float as dict keys. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:8: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:16: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:76: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:80: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:100: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition.to_data_dict:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/ion.py:docstring of pymatgen.core.ion.Ion.to_reduced_dict:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.A:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.A, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.X:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.X, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.Z:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.Z, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.oxi_state:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.oxi_state, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Element:218: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Element:229: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase:218: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase:229: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.electronic_structure, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.full_electronic_structure:18: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.full_electronic_structure:18: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:16: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:20: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.IStructure.matches:9: WARNING: Inline strong start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.PeriodicNeighbor:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:8: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:29: ERROR: Unknown directive type "todo". .. todo:: - Right now there is no way to specify what atom is being added. Use basis sets in the future? [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:64: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:66: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:74: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.Slab.get_surface_sites:20: ERROR: Unknown directive type "todo". .. todo:: Is there a way to determine site equivalence between sites in a slab and bulk system? This would allow us get the coordination number of a specific site for multi-elemental systems or systems with more than one inequivalent site. This will allow us to use this for compound systems. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.from_ase:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.from_ase:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.to_ase:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory.to_ase:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units.unitized:14: ERROR: Unexpected indentation. [docutils] WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.name: is not a callable object WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.type: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/libxcfunc.py:docstring of pymatgen.core.libxcfunc.LibxcFunc.all_kinds:1: ERROR: Unknown target name: "xc". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/core/xcfunc.py:docstring of pymatgen.core.xcfunc.XcFunc:29: ERROR: Unknown target name: "xc". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_cbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_vbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:20: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.get_extreme:24: ERROR: Unexpected indentation. [docutils] WARNING: autodoc: failed to import module 'boltztrap2' from module 'pymatgen.electronic_structure'; the following exception was raised: BoltzTraP2 has to be installed and working [autodoc.import_object] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:71: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:73: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:74: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.get_integrated_cohp_in_energy_range:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:8: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:20: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:24: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_center:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_kurtosis:5: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_skewness:5: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.BSPlotterProjected.get_projected_plots_dots:9: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.DosPlotter:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/entries/correction_calculator.py:docstring of pymatgen.entries.correction_calculator.CorrectionCalculator.compute_corrections:8: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/entries/mixing_scheme.py:docstring of pymatgen.entries.mixing_scheme.MaterialsProjectDFTMixingScheme.get_mixing_state_data:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData:31: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:16: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:57: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:63: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:64: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.get_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_spectre_plot:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.read_scan:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.read_scan, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.save_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.save_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.to_input:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.to_input, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/icet.py:docstring of pymatgen.io.icet.IcetSQS.enumerate_sqs_structures:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lmto.py:docstring of pymatgen.io.lmto.LMTOCopl:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.map_atoms_cps:16: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.match_atom_cp:18: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol:5: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:15: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_gruneisen_ph_bs_symm_line:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_ph_bs_symm_line:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/pwscf.py:docstring of pymatgen.io.pwscf.PWInput:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.data:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.data, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ik:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ik, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.is_noncollinear:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.is_noncollinear, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.nbnd:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.nbnd, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ng:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ng, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:10: WARNING: Title underline too short. Zeo++ Installation Steps: ======================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:19: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cif.py:docstring of pymatgen.io.cif.CifBlock:9: ERROR: Unknown target name: "data". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.structure_from_abivars:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser:10: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser.walk:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ShiftMode:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:30: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:37: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] WARNING: Failed to get a method signature for pymatgen.io.abinit.netcdf.EtsfReader.chemical_symbols: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_partial_waves: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.projector_functions: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.pseudo_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.root: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.Pseudo.md5: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.gth_header:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:9: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.tm_header:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:8: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:20: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:23: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:30: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:31: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:38: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:40: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:47: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:48: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.pseudos:1: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.structure:1: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset:35: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:3: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:4: ERROR: Undefined substitution referenced: "Structure". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "PseudoTable". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.num_valence_electrons:3: ERROR: Undefined substitution referenced: "Pseudo". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.edges:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.edges, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.elf_type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.elf_type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.filename:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.filename, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.format:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.format, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.kpoint:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.kpoint, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.origin:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.origin, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.points:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.points, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.spin_state:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.spin_state, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.data:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.data, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.label:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.label, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/parsers.py:docstring of pymatgen.io.aims.parsers.AimsOutChunk.lines:1: WARNING: duplicate object description of pymatgen.io.aims.parsers.AimsOutChunk.lines, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.method:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.method, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/aims/sets/magnetism.py:docstring of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.element:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.element, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.filename:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.filename, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.name:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.name, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.potential:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.potential, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.version:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.version, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.admm:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.admm, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.cc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.cc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.contracted:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.contracted, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.core:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.core, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.diffuse:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.diffuse, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.lri:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.lri, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.molopt:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.molopt, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.pc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.pc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.polarization:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.polarization, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.sr:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.sr, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.valence:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.valence, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:19: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.n_elecs:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.n_elecs, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.r_loc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.r_loc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.radii:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.radii, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.KpointSet:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Kpoint_Set:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:14: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:17: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/outputs.py:docstring of pymatgen.io.cp2k.outputs.parse_pdos:22: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.CellOptSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.get_basis_and_potential:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.print_v_hartree:3: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridCellOptSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridRelaxSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridStaticSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.RelaxSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.StaticSet:23: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:10: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/exciting/inputs.py:docstring of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz:1: WARNING: duplicate object description of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz, other instance in pymatgen.io.exciting, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header:6: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header.from_str:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/feff/sets.py:docstring of pymatgen.io.feff.sets.FEFFDictSet:26: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.sort_structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.sort_structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/inputs.py:docstring of pymatgen.io.jdftx.inputs.JDFTXStructure.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.inputs.JDFTXStructure.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxinfile_master_format.py:docstring of pymatgen.io.jdftx.jdftxinfile_master_format:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxinfile_master_format.py:docstring of pymatgen.io.jdftx.jdftxinfile_master_format:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:373: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:374: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:383: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:383: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:385: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:387: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:388: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:394: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:394: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:396: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:398: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:405: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice:407: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.a:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.a, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_coords_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements_int:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_elements_int, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.atom_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.b:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.b, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.broadening_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.c:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.c, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.efermi:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.efermi, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.egap:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.egap, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emax:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emax, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.emin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fftgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fftgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.geom_opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_eigstats:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_eigstats, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_parsable_pseudo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_parsable_pseudo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_solvation:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.has_solvation, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.homo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_bgw:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_bgw, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_gc:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_gc, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_metal:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.is_metal, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_electronic:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_electronic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_ionic:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_ionic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jsettings_lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jstrucs:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.jstrucs, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.kgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.kgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lattice_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.lumo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nat:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nat, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nbands:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nbands, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nspin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.nspin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pp_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pp_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.prefix:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.prefix, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pwcut:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.pwcut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.rhocut:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.rhocut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.semicore_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.spintype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.spintype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.total_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_radius:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_radius, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.truncation_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.valence_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jdftxoutfileslice.py:docstring of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.xc_func:1: WARNING: duplicate object description of pymatgen.io.jdftx.jdftxoutfileslice.JDFTXOutfileSlice.xc_func, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.subspacerotationadjust:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.subspacerotationadjust, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElStep.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElStep.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.iter_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.iter_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.subspacerotationadjust:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.subspacerotationadjust, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/jelstep.py:docstring of pymatgen.io.jdftx.jelstep.JElSteps.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.jelstep.JElSteps.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure:9: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.ecomponents:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.ecomponents, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.emin_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.emin_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.geom_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.line_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.line_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.nelectrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.nelectrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.t_s:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.t_s, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructure.py:docstring of pymatgen.io.jdftx.joutstructure.JOutStructure.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructure.JOutStructure.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures:111: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures:162: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.charges:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.charges, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.ecomponents:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.ecomponents, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.emin_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.emin_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged_reason:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.geom_converged_reason, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.magnetic_moments:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.magnetic_moments, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.out_slice_start_flag:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.out_slice_start_flag, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.selective_dynamics, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/joutstructures.py:docstring of pymatgen.io.jdftx.joutstructures.JOutStructures.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.joutstructures.JOutStructures.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:434: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:485: WARNING: Inline substitution_reference start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile:508: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.a:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.a, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.abs_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.abs_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_coords_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements_int:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_elements_int, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_types:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.atom_types, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.b:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.b, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.broadening_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.c:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.c, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.converged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.converged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.e:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.efermi:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.efermi, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.egap:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.egap, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_alpha:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_alpha, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_e:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_e, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elec_nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.elecmindata:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.elecmindata, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.emax:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.emax, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.emin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.emin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.eopt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.eopt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.etype:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.etype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.fftgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.fftgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.geom_opt_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.grad_k:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.grad_k, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.has_solvation:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.has_solvation, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.homo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_gc:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_gc, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_metal:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.is_metal, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_electronic:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_electronic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_fluid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_fluid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_ionic:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_ionic, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jsettings_lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.jstrucs:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.jstrucs, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.kgrid:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.kgrid, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_final:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_final, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_initial:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lattice_initial, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.linmin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.linmin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo_filling:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.lumo_filling, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.mu:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.mu, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nat:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nat, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nbands:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nbands, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nspin:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nspin, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.nstep:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.nstep, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.pp_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.pp_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.prefix:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.prefix, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.pwcut:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.pwcut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.rhocut:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.rhocut, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.semicore_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.slices:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.slices, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.spintype:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.spintype, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.strain:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.strain, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.stress:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.stress, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.structure:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.structure, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.tot_magneticmoment:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.tot_magneticmoment, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.total_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.trajectory:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.trajectory, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_radius:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_radius, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_type:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.truncation_type, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons_uncharged:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.valence_electrons_uncharged, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutfile.xc_func:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutfile.xc_func, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.bandProjections:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.bandProjections, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.calc_dir:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.calc_dir, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.eigenvals:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.eigenvals, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.orb_label_list:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.orb_label_list, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.outfile:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.outfile, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.paths:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.paths, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/jdftx/outputs.py:docstring of pymatgen.io.jdftx.outputs.JDFTXOutputs.store_vars:1: WARNING: duplicate object description of pymatgen.io.jdftx.outputs.JDFTXOutputs.store_vars, other instance in pymatgen.io.jdftx, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:42: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:57: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.LammpsData.set_charge_atom_type:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:25: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:29: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.template:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.template, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:9: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:17: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:7: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:14: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:19: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:23: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:6: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:19: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:21: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:22: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:23: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:28: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:25: WARNING: Inline literal start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:35: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData:6: ERROR: Unknown target name: "a-za-z0-9". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors:24: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors.get_info_cohps_to_neighbors:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:22: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:26: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:27: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:37: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:42: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.completedos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.completedos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.energies:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.itdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.itdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.pdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.pdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:12: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Icohplist:31: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:18: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/pwmat/outputs.py:docstring of pymatgen.io.pwmat.outputs.DosSpin.get_partial_dos:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:64: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:66: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:67: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:74: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:79: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:81: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:85: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:86: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:97: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:99: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:101: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:137: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:14: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:4: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:13: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:68: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:97: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:119: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:127: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:135: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:68: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:97: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:119: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:127: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:135: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:81: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:101: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:108: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:110: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:115: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:116: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:123: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:130: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:132: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:137: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:138: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:140: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:146: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:148: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:153: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:154: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.PESScanSet:88: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:87: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:107: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:108: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:119: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:126: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:128: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:133: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:134: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:141: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:148: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:150: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:156: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:158: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:164: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:166: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:171: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:172: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:173: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:183: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:186: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:188: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:190: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:191: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:76: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:90: WARNING: Enumerated list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:97: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:99: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:104: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:105: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:112: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:119: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:121: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:126: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:127: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:129: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:135: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:137: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:143: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:144: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:152: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:155: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:157: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:159: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:160: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.TransitionStateSet:77: WARNING: Inline emphasis start-string without end-string. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.lattice_velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.lattice_velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.selective_dynamics, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.get_electron_configuration:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar:17: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar_hash_based:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:7: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:12: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:21: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:27: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.VaspInput.write_input:18: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:8: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:5: CRITICAL: Unexpected section title. Fermi contact (isotropic) hyperfine coupling parameter (MHz) ------------------------------------------------------------- [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:7: CRITICAL: Unexpected section title. ion A_pw A_1PS A_1AE A_1c A_tot ------------------------------------------------------------- [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:13: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_freq_dielectric:6: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:3: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:8: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:12: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_real, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nbands:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nbands, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nkpoints:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nkpoints, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nspin:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nspin, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_real, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:9: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:12: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:17: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:21: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MP24RelaxSet:30: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] WARNING: Failed to get a method signature for pymatgen.phonon.dos.PhononDos.ind_zero_freq: is not a callable object /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:1: ERROR: Unknown interpreted text role "cite". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:5: ERROR: Unknown interpreted text role "cite". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/plotter.py:docstring of pymatgen.phonon.plotter.PhononDosPlotter:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.compute_directionality_quality_criterion:11: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/phonon/gruneisen.py:docstring of pymatgen.phonon.gruneisen.GruneisenParameter.average_gruneisen:1: ERROR: Unknown target name: "materialia". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer:7: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:16: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:17: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:10: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:15: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:22: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:23: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/groups.py:docstring of pymatgen.symmetry.groups.PointGroup.symmetry_ops:1: WARNING: duplicate object description of pymatgen.symmetry.groups.PointGroup.symmetry_ops, other instance in pymatgen.symmetry, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:15: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:16: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:53: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:54: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:34: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:35: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:6: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:45: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:68: WARNING: Duplicate explicit target name: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:69: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:5: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.description:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.description, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.name:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.name, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.url:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.url, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/string.py:docstring of pymatgen.util.string.str_delimited:4: ERROR: Unexpected indentation. [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst:21: ERROR: Unknown target name: "int". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst:21: ERROR: Unknown target name: "float". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Unknown target name: "2". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". [docutils] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing:1: WARNING: duplicate object description of pymatgen.util.testing, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.TEST_STRUCTURES:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.TEST_STRUCTURES, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.assert_msonable:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.assert_msonable, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.assert_str_content_equal:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.assert_str_content_equal, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.get_structure:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.get_structure, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/util/testing.py:docstring of pymatgen.util.testing.PymatgenTest.serialize_with_pickle:1: WARNING: duplicate object description of pymatgen.util.testing.PymatgenTest.serialize_with_pickle, other instance in pymatgen.util, use :no-index: for one of them looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/modules.rst: WARNING: document isn't included in any toctree /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.testing.rst: WARNING: document isn't included in any toctree /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.alchemy.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.alchemy /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.analysis.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.analysis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.apps.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.apps /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.cli.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.cli /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.command_line.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.command_line /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.core.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.core /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.electronic_structure.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.electronic_structure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.entries.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.entries /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.ext.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.ext /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.io /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.optimization.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.optimization /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.phonon.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.phonon /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.symmetry.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.symmetry /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.transformations.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.transformations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.util.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.util /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.vis.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.vis done preparing documents... WARNING: unsupported theme option 'display_version' given done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.2.18+dfsg1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 2%] index writing output... [ 4%] modules writing output... [ 6%] pymatgen writing output... [ 8%] pymatgen.alchemy writing output... [ 10%] pymatgen.analysis writing output... [ 12%] pymatgen.analysis.chemenv writing output... [ 14%] pymatgen.analysis.chemenv.connectivity writing output... [ 16%] pymatgen.analysis.chemenv.coordination_environments writing output... [ 18%] pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files writing output... [ 20%] pymatgen.analysis.chemenv.utils writing output... [ 22%] pymatgen.analysis.diffraction writing output... [ 24%] pymatgen.analysis.elasticity writing output... [ 26%] pymatgen.analysis.ferroelectricity writing output... [ 28%] pymatgen.analysis.gb writing output... [ 30%] pymatgen.analysis.interfaces writing output... [ 32%] pymatgen.analysis.magnetism writing output... [ 34%] pymatgen.analysis.solar writing output... [ 36%] pymatgen.analysis.structure_prediction writing output... [ 38%] pymatgen.analysis.topological writing output... [ 40%] pymatgen.analysis.xas writing output... [ 42%] pymatgen.apps writing output... [ 44%] pymatgen.apps.battery writing output... [ 46%] pymatgen.apps.borg writing output... [ 48%] pymatgen.cli writing output... [ 50%] pymatgen.command_line writing output... [ 52%] pymatgen.core writing output... [ 54%] pymatgen.electronic_structure writing output... [ 56%] pymatgen.entries writing output... [ 58%] pymatgen.ext writing output... [ 60%] pymatgen.io writing output... [ 62%] pymatgen.io.abinit writing output... [ 64%] pymatgen.io.aims writing output... [ 66%] pymatgen.io.aims.sets writing output... [ 68%] pymatgen.io.cp2k writing output... [ 70%] pymatgen.io.exciting writing output... [ 72%] pymatgen.io.feff writing output... [ 74%] pymatgen.io.jdftx writing output... [ 76%] pymatgen.io.lammps writing output... [ 78%] pymatgen.io.lobster writing output... [ 80%] pymatgen.io.pwmat writing output... [ 82%] pymatgen.io.qchem writing output... [ 84%] pymatgen.io.vasp writing output... [ 86%] pymatgen.io.xtb writing output... [ 88%] pymatgen.optimization writing output... [ 90%] pymatgen.phonon writing output... [ 92%] pymatgen.symmetry writing output... 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[100%] pymatgen.vis /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:16: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_site_orbital_dos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.lobster.rst:29: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.KpointOptProps:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.KpointOptProps.kpoints:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun:129: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun.get_band_structure:1: WARNING: more than one target found for cross-reference 'BandStructure': pymatgen.electronic_structure.bandstructure.BandStructure, pymatgen.io.cp2k.inputs.BandStructure [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/cpython3_3.13_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.VaspInputSet.prev_kpoints:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints [ref.python] generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 941 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' SKIP_TESTS=""; \ list_initialised=0; \ for t in test_matproj TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_CifWriter test_read_write test_init test_get_site_symmetries BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_get_parchg test_numerical_eoswrapper "(TestAnharmonicQuasiharmociDebyeApprox and test_gruneisen_parameter)" plot test_structure_environments test_pca test_get_info_cohps_to_neighbors test_get_parchg test_as_dict_from_dict test_ir_spectra; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ for py in `py3versions -sv`; do \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python$py; \ cp -a $pybuilddir $testdir; \ cp -a tests $testdir; \ PMG_TEST_FILES_DIR=/usr/share/doc/pymatgen-test-files/examples/files \ PYTHONPATH=$testdir PATH=$pybuilddir/../scripts:$PATH \ python$py -m pytest -v --import-mode=prepend --color=no -k "${SKIP_TESTS}" $testdir; \ done skipping tests: not ( test_matproj or TestGenKpt or TestHighSymmetryPoint or test_from_multi_jobs_file or test_from_string or test_read_molecule or test_read_nbo or test_read_negative or test_read_plots or test_read_write_nbo7 or test_all or test_custom_smd_write or test_sets or test_CifWriter or test_read_write or test_init or test_get_site_symmetries or BSDOSPlotterTest or test_cdft_dc_parsing or test_get_structure_by_id or test_babel_PC_with_RO_depth_0_vs_depth_10 or test_fit or test_get_parchg or test_numerical_eoswrapper or (TestAnharmonicQuasiharmociDebyeApprox and test_gruneisen_parameter) or plot or test_structure_environments or test_pca or test_get_info_cohps_to_neighbors or test_get_parchg or test_as_dict_from_dict or test_ir_spectra ) ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/pymatgen-2025.2.18+dfsg1 configfile: pyproject.toml plugins: typeguard-4.4.2 collected 3114 items / 393 deselected / 8 skipped / 2721 selected .pybuild/test_python3.13/tests/alchemy/test_filters.py ....... 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[100%] =============================== warnings summary =============================== .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:333: RuntimeWarning: divide by zero encountered in scalar divide return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx) .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:351: RuntimeWarning: divide by zero encountered in scalar divide aa * np.power(xx - 1.0, 2) / xx**2.0, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 96974 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 8 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 16 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 8 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 468 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:364: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) if (self - self.transpose(transpose_seq) > tol).any(): .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 48487 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 2 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 8 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 4 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 234 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_any(a, axis, dtype, out, keepdims) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5280 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 180 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 3 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 360 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 1776 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 15 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 215 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:287: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return sum(np.transpose(self, ind) for ind in perms) / len(perms) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 14329 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 363 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 31 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 1272 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 7104 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 10 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 63 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 10977 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) result = (less_equal(abs(x-y), atol + rtol * abs(y)) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1788 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 36 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 2 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 6 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1369 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) & isfinite(y) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1793 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 51 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1374 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) | (x == y)) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1910 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 108 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 17 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 159 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 16 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 18 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1629 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_all(a, axis, dtype, out, keepdims) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 52 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 40 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 162 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return cls(0.5 * (np.dot(dfm.trans, dfm) - np.eye(3))) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:92: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) e_density = np.sum(self.calculate_stress(strain) * strain) / self.order .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 5 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1 warning /usr/lib/python3/dist-packages/numpy/_core/_methods.py:52: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_sum(a, axis, dtype, out, keepdims, initial, where) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 1174 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 54 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:110: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new_tensor[abs(new_tensor) < tol] = 0 .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py:228: UserWarning: Extra strain states in strain-stress pairs are neglected in independent strain fitting et = ElasticTensor.from_independent_strains(strains, stresses) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 12 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:482: UserWarning: Tensor is not symmetric, information may be lost in Voigt conversion. stresses = np.array([Stress(stress).voigt for stress in stresses]) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 30 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 18 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:760: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) x_id = func(x) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:761: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) y_id = func(y) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 99 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 57 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 12 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 12 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 255 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:773: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) if np.bool(x_id == y_id).all() != True: .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 58 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 22 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:815: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) func=lambda xy: xy == +inf, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:814: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) flagged |= func_assert_same_pos(x, y, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 58 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 22 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 5 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:818: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) func=lambda xy: xy == -inf, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 4 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 1 warning .pybuild/test_python3.13/tests/analysis/test_nmr.py: 2 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 84 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:817: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) flagged |= func_assert_same_pos(x, y, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 56 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 8 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 2 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 168 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:842: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) x, y = x[~flagged], y[~flagged] .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 124 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 60 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 13 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 6 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 9 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 338 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2451: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) result |= isnan(x) & isnan(y) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 33 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 19 warnings .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_nmr.py: 4 warnings .pybuild/test_python3.13/tests/analysis/test_piezo.py: 3 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 85 warnings /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:851: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) invalids = np.logical_not(val) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 36 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 8 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:629: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) mask = abs(self) > prec .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:633: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) gmask = np.abs(old) > prec .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:634: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) nmask = np.abs(new) > prec .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:635: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new_mask = np.logical_not(gmask) * nmask .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 3456 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 768 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:636: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) avg_mask = gmask * nmask .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 6912 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1536 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:637: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) old[avg_mask] = (old[avg_mask] + new[avg_mask]) / 2.0 .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 3474 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 2775 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:327: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return sum(self.transform(symm_op) for symm_op in symm_ops) / len(symm_ops) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 36 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 8 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:665: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) diff = np.abs(test_old - test_new) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 18 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 4 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:666: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) converged = (diff < prec).all() .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 11 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:584: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return sum(c.calculate_stress(strain) for c in self) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 28 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:742: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) ce_exp.append(np.einsum(ein_str, -ce_exp[-1], self[1], ce_exp[-1], ce_exp[-1])) .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 2 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 1 warning /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:1895: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return asanyarray(a).trace( .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:63: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return list(zip(*np.where(abs(self - np.eye(3)) > tol), strict=True)) .pybuild/test_python3.13/tests/analysis/elasticity/test_strain.py: 12 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) ft_dot_f = 2 * strain + np.eye(3) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:70: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return 1 / 3 * self.trace() .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:77: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return self - self.mean_stress * np.eye(3) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:89: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return def_grad.det * np.dot(self, def_grad.inv.trans) .pybuild/test_python3.13/tests/analysis/elasticity/test_stress.py::TestStress::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return def_grad.det * np.dot(np.dot(def_grad.inv, self), def_grad.inv.trans) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:235: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) eps = self - 1 / 3 * np.trace(self) * np.identity(3) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 81 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/strain.py:237: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return np.sqrt(np.sum(eps * eps) * 2 / 3) .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 78 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 82 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:1021: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return vec if norm < 1e-8 else vec / norm .pybuild/test_python3.13/tests/analysis/interfaces/test_coherent_interface.py: 78 warnings .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings .pybuild/test_python3.13/tests/core/test_tensors.py: 82 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:992: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new_y = y - np.dot(new_x, y) * new_x .pybuild/test_python3.13/tests/analysis/test_graphs.py: 17 warnings .pybuild/test_python3.13/tests/command_line/test_critic2_caller.py: 5 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/command_line/critic2_caller.py:490: DeprecationWarning: Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future. self._parse_stdout(stdout) .pybuild/test_python3.13/tests/analysis/test_interface_reactions.py: 24 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/analysis/test_interface_reactions.py:368: DeprecationWarning: Arrays of 2-dimensional vectors are deprecated. Use arrays of 3-dimensional vectors instead. (deprecated in NumPy 2.0) positions = [np.cross(v1, v2) for v1, v2 in relative_vectors] .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:91: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) sigma_iso = pas.trace() / 3 .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:104: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) sigma_iso = pas.trace() / 3 .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/nmr.py:112: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) sigma_iso = pas.trace() / 3 .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_principal_axis_system .pybuild/test_python3.13/tests/analysis/test_nmr.py::TestElectricFieldGradient::test_principal_axis_system /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:850: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) val = comparison(x, y) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 120 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:385: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor = Tensor(np.random.default_rng().random((3, 3)) - 0.5) * max_force .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 590 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:387: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = sum(temp_tensor.transform(symm_op) for symm_op in self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 120 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:388: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum /= len(self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 60 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:396: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor_sum.T) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1040 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:393: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor2) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 12390 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:568: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = sum(temp_tensor.transform(symm_op) for symm_op in self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 2520 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:571: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum /= len(self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1260 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:581: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor_sum.T) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 21840 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:578: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor2) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 826 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:437: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = sum(temp_tensor.transform(symm_op) for symm_op in self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 168 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:439: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum /= len(self.sharedops[op[0]][op[1]]) .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 84 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:449: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor_sum.T) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 1456 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:446: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor_sum = (temp_tensor_sum + temp_tensor2) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 88 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:126: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor = sum(temp_tensor.transform(symm_op) for symm_op in self.pointops[atom]) / len( .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 88 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:145: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor = sum(temp_tensor.transform(symm_op) for symm_op in self.pointops[atom]) / len( .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 84 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:243: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor[dim] = (temp_tensor[dim] + temp_tensor[dim].T) / 2 .pybuild/test_python3.13/tests/analysis/test_piezo_sensitivity.py: 98 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/piezo_sensitivity.py:244: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) temp_tensor = sum(temp_tensor.transform(symm_op) for symm_op in self.pointops[atom]) / len( .pybuild/test_python3.13/tests/analysis/test_pourbaix_diagram.py: 13 warnings /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3809) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:243: RuntimeWarning: overflow encountered in exp ev += vt * (1 / 2 + 1 / (np.exp(vt / self.temp) - 1)) .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:244: RuntimeWarning: overflow encountered in exp sv_temp = vt / (self.temp * (np.exp(vt / self.temp) - 1)) - np.log(1 - np.exp(-vt / self.temp)) .pybuild/test_python3.13/tests/core/test_structure.py::TestStructure::test_rotate_sites /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/structure.py:4699: RuntimeWarning: invalid value encountered in divide rm = expm(np.cross(np.eye(3), axis / norm(axis)) * theta) .pybuild/test_python3.13/tests/core/test_tensors.py: 18 warnings /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:207: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) np.max(abs(ieee - orig.convert_to_ieee(struct))) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_convert_to_ieee /usr/lib/python3/dist-packages/numpy/_core/_methods.py:44: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_maximum(a, axis, None, out, keepdims, initial, where) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_round /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:376: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) test = self.non_symm + 0.01 .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensor::test_round /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return conv.wrap(result, to_scalar=False) .pybuild/test_python3.13/tests/core/test_tensors.py::TestTensorCollection::test_list_based_functions /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:409: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) tc = TensorCollection([1e-4 * Tensor(np.eye(3))] * 4) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_get_scaled /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/core/tensors.py:1003: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return type(self)(self * scale_factor) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_properties .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_properties /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:524: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) assert self.rand_sqtensor.symmetrized == approx(0.5 * (self.rand_sqtensor + self.rand_sqtensor.trans)) .pybuild/test_python3.13/tests/core/test_tensors.py::TestSquareTensor::test_refine_rotation /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/core/test_tensors.py:556: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new[1] *= 1.05 .pybuild/test_python3.13/tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/electronic_structure/dos.py:527: RuntimeWarning: divide by zero encountered in divide relative_error = np.abs(calc_doping / concentration - 1.0) .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=3809) is multi-threaded, use of fork() may lead to deadlocks in the child. pid = os.fork() .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_get_str .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_get_str /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) .pybuild/test_python3.13/tests/io/test_cif.py::TestCifIO::test_cif_writer_write_file /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/io/cif.py:1767: FutureWarning: We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`. with zopen(filename, mode=mode, encoding="utf-8") as file: .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_ionic /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:366: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. Electronic convergence reached: True. Ionic convergence reached: False. vasprun_dfpt_ionic = Vasprun(filepath, parse_potcar_file=False) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_unconverged /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:373: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.unconverged.xml.gz is an unconverged VASP run. Electronic convergence reached: False. Ionic convergence reached: True. vasprun_dfpt_unconverged = Vasprun(filepath, parse_potcar_file=False) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:159: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.hse06.xml.gz is an unconverged VASP run. Electronic convergence reached: False. Ionic convergence reached: True. vasp_run = Vasprun(f"{VASP_OUT_DIR}/vasprun.hse06.xml.gz") .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:165: UnconvergedVASPWarning: /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. Electronic convergence reached: True. Ionic convergence reached: False. vasp_run = Vasprun(f"{VASP_OUT_DIR}/vasprun.dfpt.ionic.xml.gz") .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:238: RuntimeWarning: invalid value encountered in divide ratio = np.nanmax(cdos.densities[Spin.up] / cdos_norm.densities[Spin.up]) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:243: RuntimeWarning: invalid value encountered in divide ratio = np.nanmax(cdos.densities[Spin.up] / cdos_norm2.densities[Spin.up]) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:248: RuntimeWarning: invalid value encountered in divide ratio = np.nanmax(cdos.densities[Spin.up] / cdos_norm3.densities[Spin.up]) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/tests/io/vasp/test_outputs.py:256: RuntimeWarning: invalid value encountered in divide ratio = np.nanmax(cdos.densities[Spin.up] / cdos_norm.densities[Spin.up]) .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestWavecar::test_standard /build/reproducible-path/pymatgen-2025.2.18+dfsg1/.pybuild/test_python3.13/pymatgen/io/vasp/outputs.py:5008: RuntimeWarning: invalid value encountered in cast recl, spin, rtag = np.fromfile(file, dtype=np.float64, count=3).astype(int) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 30 durations ============================= 2070.81s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_rotor_search_rrs 246.27s call .pybuild/test_python3.13/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 154.37s call .pybuild/test_python3.13/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 132.39s call .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 120.06s call .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 108.05s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_confab_conformers 98.24s call .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py::TestCollinearMagneticStructureAnalyzer::test_round_magmoms 95.85s call .pybuild/test_python3.13/tests/analysis/topological/test_spillage.py::TestSolar::test_spillage_from_vasprun 88.94s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_from_bulk_and_miller 83.00s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_symmetrization 80.62s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 80.57s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_generate_substitution_structures 78.23s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_make3d 77.17s call .pybuild/test_python3.13/tests/io/vasp/test_optics.py::TestVasprun::test_optics 72.93s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_functions 67.90s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_find_adsorption_sites 67.34s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_generate_adsorption_structures 64.09s call .pybuild/test_python3.13/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 63.93s call .pybuild/test_python3.13/tests/cli/test_pmg_structure.py::test_pmg_structure 61.63s call .pybuild/test_python3.13/tests/analysis/interfaces/test_substrate_analyzer.py::test_substrate_analyzer_init 61.38s call .pybuild/test_python3.13/tests/analysis/test_transition_state.py::TestNEBAnalysis::test_run 55.40s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_get_symmetric_sites 54.82s call .pybuild/test_python3.13/tests/analysis/test_prototypes.py::TestAflowPrototypeMatcher::test_prototype_matching 53.34s call .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestWorkFunctionAnalyzer::test_shift 50.10s call .pybuild/test_python3.13/tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_adsorb_both_surfaces 48.26s call .pybuild/test_python3.13/tests/core/test_interface.py::TestGrainBoundaryGenerator::test_gb_from_parameters 45.72s call .pybuild/test_python3.13/tests/core/test_surface.py::TestMillerIndexFinder::test_generate_all_slabs 41.96s call .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_from_diff_fit 39.76s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_oriented_unit_cell 37.22s call .pybuild/test_python3.13/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_edges_given_tfsi =========================== short test summary info ============================ SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_cod.py:25: www.crystallography.net is down SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_matproj.py:44: MP API is down SKIPPED [1] .pybuild/test_python3.13/tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_zeopp.py:20: zeo not installed SKIPPED [1] .pybuild/test_python3.13/tests/performance/test_import_time.py:32: ref time only comparable in CI runner SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpath_hin.py:11: seekpath not installed SKIPPED [1] .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py:264: enumlib not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py:300: enumlib not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_graphs.py:351: graphviz executables not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_graphs.py:243: Need someone to fix this, see issue 4206 SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_local_env.py:1367: critic2 executable not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_reaction_calculator.py:334: hash test requires 64 bits SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:119: bader executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:84: bader executable not present SKIPPED [1] 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This is also the case in a PR. SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:1906: chgnet is not built against NumPy 2.0 SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2015: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2026: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2035: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2668: could not import 'tblite': No module named 'tblite' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2676: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 SKIPPED [1] .pybuild/test_python3.13/tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily SKIPPED [1] .pybuild/test_python3.13/tests/core/test_xcfunc.py:56: TODO: SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:254: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:221: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:241: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:169: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:199: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:232: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:101: No FDINT SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:123: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:203: No x_trans. 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SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:93: OPTIMADE providers list is down. SKIPPED [1] .pybuild/test_python3.13/tests/io/exciting/test_inputs.py:137: inconsistent data SKIPPED [1] .pybuild/test_python3.13/tests/io/test_cif.py:322: non-free PF*.cif test files are not available SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:12: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:20: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:22: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:31: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:37: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_inputs.py:1717: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpaths.py:21: No seek path present. 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SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:638: mcsqs not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:670: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:656: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:681: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:874: hiphive not present SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_site_transformations.py:214: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:238: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:255: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:273: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:279: enum_lib not present. = 2599 passed, 130 skipped, 393 deselected, 296976 warnings in 7352.48s (2:02:32) = ..tot conformations = 3 ..tot confs tested = 3 ..below energy threshold = 3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pymatgen-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:339: Ignoring complex environment marker: boltztrap2>=24.9.4; platform_system != "Windows" and extra == "optional" I: dh_python3 pydist:339: Ignoring complex environment marker: tblite[ase]>=0.3.0; (platform_system == "Linux" and python_version < "3.12") and extra == "tblite" debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.2.18+dfsg1' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pymatgen-doc' in '../python-pymatgen-doc_2025.2.18+dfsg1-4_all.deb'. dpkg-deb: building package 'python3-pymatgen-dbgsym' in '../python3-pymatgen-dbgsym_2025.2.18+dfsg1-4_i386.deb'. dpkg-deb: building package 'python3-pymatgen' in '../python3-pymatgen_2025.2.18+dfsg1-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../pymatgen_2025.2.18+dfsg1-4_i386.buildinfo dpkg-genchanges --build=binary -O../pymatgen_2025.2.18+dfsg1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pymatgen-2025.2.18+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/24528/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/24528/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24528 and its subdirectories I: Current time: Sat Mar 1 08:04:34 +14 2025 I: pbuilder-time-stamp: 1740765874