I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 17 18:10:00 -12 2026 I: pbuilder-time-stamp: 1776492600 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-pyani_0.2.12-3.dsc] I: copying [./python-pyani_0.2.12.orig.tar.gz] I: copying [./python-pyani_0.2.12-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: unsupported subcommand dpkg-source: info: extracting python-pyani in python-pyani-0.2.12 dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz dpkg-source: info: unpacking python-pyani_0.2.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest.patch dpkg-source: info: applying dataframe_sort.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/47416/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2616922447494182b30af8507b9779f5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='47416' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.04UvFWJ9/pbuilderrc_pCI9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.04UvFWJ9/b1 --logfile b1/build.log python-pyani_0.2.12-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/47416/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19771 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu76{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsigsegv2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} mummer{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 167 MB of archives. After unpacking 653 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libsigsegv2 i386 2.14-1+b2 [34.6 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 gawk i386 1:5.2.1-2+b1 [680 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-2 [859 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.7.0-1 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-2 [2262 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-2 [1960 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-2 [746 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 python3-numpy-dev i386 1:2.2.3+ds-5 [146 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-19 [735 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:2.2.3+ds-5 [5060 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.46-2 [337 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.46-2 [117 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 file i386 1:5.46-2 [43.4 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.47-1.1 [289 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+24 [217 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 49 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2.1 [318 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2.1 [402 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.16-1 [834 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-8 [618 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 blt i386 2.5.3+dfsg-8 [5984 B] Get: 63 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 69 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libicu76 i386 76.1-3 [9893 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.3+b1 [734 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250308 [115 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 fonts-lyx all 2.4.3-1 [190 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.4-1+b1 [596 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.7.0-1 [167 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libgpg-error0 i386 1.51-3 [87.3 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libgcrypt20 i386 1.11.0-7 [799 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.84.0-2 [1583 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1+b1 [505 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3.1 [170 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 liblmdb0 i386 0.9.31-1+b2 [46.9 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libmbedcrypto16 i386 3.6.2-3 [377 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libmbedx509-7 i386 3.6.2-3 [149 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libmbedtls21 i386 3.6.2-3 [240 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.3-2 [216 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libpython3.13 i386 3.13.2-2 [2202 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libpython3.13-dev i386 3.13.2-2 [5188 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.13.2-2 [10.3 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libpython3-all-dev i386 3.13.2-2 [1068 B] Get: 112 http://deb.debian.org/debian unstable/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 mummer i386 3.23+dfsg-8 [669 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 ncbi-blast+ i386 2.16.0+ds-6+b1 [16.6 MB] Get: 124 http://deb.debian.org/debian unstable/main i386 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.2-2 [1044 B] Get: 126 http://deb.debian.org/debian unstable/main i386 python3.13-dev i386 3.13.2-2 [506 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.13.2-2 [26.1 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-all-dev i386 3.13.2-2 [1068 B] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-attr all 25.1.0-1 [68.7 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3.13-tk i386 3.13.2-2 [108 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python3-tk i386 3.13.2-1 [9516 B] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-pil.imagetk i386 11.1.0-5+b1 [81.9 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-pil i386 11.1.0-5+b1 [518 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.27.0-2 [117 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.3.1-1 [1158 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.85+dfsg-2+b1 [1668 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 python3-brotli i386 1.1.0-2+b7 [318 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 python3-contourpy i386 1.3.1-1+b1 [223 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 146 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 python3-fs all 2.4.16-7 [95.2 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.3.1-1+b1 [1257 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 python3-lz4 i386 4.4.0+dfsg-1+b1 [25.5 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.15.2-5 [16.4 MB] Get: 153 http://deb.debian.org/debian unstable/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 python3-sympy all 1.13.3-5 [4148 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 python3-fonttools i386 4.55.3-2+b1 [1442 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 163 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 169 http://deb.debian.org/debian unstable/main i386 python3-kiwisolver i386 1.4.7-3+b1 [69.7 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.8.3-7+b1 [23.0 MB] Get: 173 http://deb.debian.org/debian unstable/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 python3-tz all 2025.1-3 [4004 B] Get: 175 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.5-1 [250 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 python3-seaborn all 0.13.2-4.1 [215 kB] Fetched 167 MB in 3s (52.8 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19771 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../libsigsegv2_2.14-1+b2_i386.deb ... Unpacking libsigsegv2:i386 (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up libsigsegv2:i386 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19813 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2+b1_i386.deb ... Unpacking gawk (1:5.2.1-2+b1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.2-2_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.7.0-1_i386.deb ... Unpacking libexpat1:i386 (2.7.0-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_i386.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:i386 (3.13.2-2) ... Setting up libexpat1:i386 (2.7.0-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20336 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_i386.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21314 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_i386.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package python3-numpy-dev:i386. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_i386.deb ... Unpacking python3-numpy-dev:i386 (1:2.2.3+ds-5) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../002-libblas3_3.12.1-2_i386.deb ... Unpacking libblas3:i386 (3.12.1-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../003-libgfortran5_14.2.0-19_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-19) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../004-liblapack3_3.12.1-2_i386.deb ... Unpacking liblapack3:i386 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_i386.deb ... Unpacking python3-numpy (1:2.2.3+ds-5) ... Selecting previously unselected package sgml-base. Preparing to unpack .../006-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.46-2_i386.deb ... Unpacking libmagic-mgc (1:5.46-2) ... 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Selecting previously unselected package libtcl8.6:i386. Preparing to unpack .../022-libtcl8.6_8.6.16+dfsg-1_i386.deb ... Unpacking libtcl8.6:i386 (8.6.16+dfsg-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../023-libbrotli1_1.1.0-2+b7_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:i386. Preparing to unpack .../024-libpng16-16t64_1.6.47-1.1_i386.deb ... Unpacking libpng16-16t64:i386 (1.6.47-1.1) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:i386. Preparing to unpack .../028-libfontenc1_1%3a1.1.8-1+b2_i386.deb ... Unpacking libfontenc1:i386 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../029-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../030-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../031-xfonts-utils_1%3a7.7+7_i386.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../032-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../033-fontconfig-config_2.15.0-2.1_i386.deb ... Unpacking fontconfig-config (2.15.0-2.1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../034-libfontconfig1_2.15.0-2.1_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-2.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../035-libxau6_1%3a1.0.11-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../036-libxdmcp6_1%3a1.1.5-1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../037-libxcb1_1.17.0-2+b1_i386.deb ... Unpacking libxcb1:i386 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../038-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../039-libx11-6_2%3a1.8.10-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.10-2) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../040-libxrender1_1%3a0.9.10-1.1+b4_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1+b4) ... Selecting previously unselected package libxft2:i386. Preparing to unpack .../041-libxft2_2.3.6-1+b4_i386.deb ... Unpacking libxft2:i386 (2.3.6-1+b4) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../042-libxext6_2%3a1.3.4-1+b3_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b3) ... Selecting previously unselected package libxss1:i386. Preparing to unpack .../043-libxss1_1%3a1.2.3-1+b3_i386.deb ... Unpacking libxss1:i386 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:i386. Preparing to unpack .../044-libtk8.6_8.6.16-1_i386.deb ... Unpacking libtk8.6:i386 (8.6.16-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../045-tk8.6-blt2.5_2.5.3+dfsg-8_i386.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyani-0.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyani_0.2.12-3_source.changes dpkg-buildpackage: info: source package python-pyani dpkg-buildpackage: info: source version 0.2.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani copying pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani running egg_info creating pyani.egg-info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt writing manifest file 'pyani.egg-info/SOURCES.txt' reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.13 copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.13 copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.13 changing mode of build/scripts-3.13/average_nucleotide_identity.py from 644 to 755 changing mode of build/scripts-3.13/genbank_get_genomes_by_taxon.py from 644 to 755 changing mode of build/scripts-3.13/delta_filter_wrapper.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyani-0.2.12 plugins: typeguard-4.4.2 collected 56 items tests/test_anib.py sss.....sss...ss [ 28%] tests/test_anim.py ...... [ 39%] tests/test_concordance.py .s.. [ 46%] tests/test_dependencies.py ......s. [ 60%] tests/test_graphics.py ...... [ 71%] tests/test_jobs.py ......... [ 87%] tests/test_multiprocessing.py ... [ 92%] tests/test_parsing.py . [ 94%] tests/test_tetra.py ... [100%] =============================== warnings summary =============================== pyani/pyani_graphics.py:70 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:70: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD) pyani/pyani_graphics.py:71 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:71: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD) pyani/pyani_graphics.py:72 /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py:72: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead. plt.register_cmap(cmap=pyani_config.CMAP_BURD) .pybuild/cpython3_3.13_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy results.alignment_lengths[org][org] = length .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 1.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = float(val) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy data[columns[idx]][row] = 100.0 .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy correlations[org2][org1] = correlations[org1][org2] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 46 passed, 10 skipped, 31 warnings in 413.22s (0:06:53) ============ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyani/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_tools.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_jobs.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_graphics.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_files.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_files.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_config.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anib.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_tools.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/tetra.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_graphics.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/pyani_jobs.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__pycache__/anim.cpython-313.pyc -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__pycache__ copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_sge.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/run_multiprocessing.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/pyani_config.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anim.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/tetra.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/__init__.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani copying /build/reproducible-path/python-pyani-0.2.12/.pybuild/cpython3_3.13_pyani/build/pyani/anib.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_files.py to pyani_files.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_sge.py to run_sge.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/pyani_config.py to pyani_config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anim.py to anim.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/tetra.py to tetra.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani/anib.py to anib.cpython-313.pyc running install_egg_info Copying pyani.egg-info to /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/lib/python3.13/dist-packages/pyani-0.2.12.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/average_nucleotide_identity.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/delta_filter_wrapper.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin copying build/scripts-3.13/genbank_get_genomes_by_taxon.py -> /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755 changing mode of /build/reproducible-path/python-pyani-0.2.12/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pyani-0.2.12' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/python-pyani-0.2.12' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.12-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-pyani_0.2.12-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-pyani_0.2.12-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/47416 and its subdirectories I: Current time: Fri Apr 17 18:19:57 -12 2026 I: pbuilder-time-stamp: 1776493197