I: pbuilder: network access will be disabled during build
I: Current time: Fri Mar 7 04:10:54 -12 2025
I: pbuilder-time-stamp: 1741363854
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [q2-fragment-insertion_2024.5.0-1.dsc]
I: copying [./q2-fragment-insertion_2024.5.0.orig.tar.gz]
I: copying [./q2-fragment-insertion_2024.5.0-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./q2-fragment-insertion_2024.5.0-1.dsc: unsupported subcommand
dpkg-source: info: extracting q2-fragment-insertion in q2-fragment-insertion-2024.5.0
dpkg-source: info: unpacking q2-fragment-insertion_2024.5.0.orig.tar.gz
dpkg-source: info: unpacking q2-fragment-insertion_2024.5.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying configparser.patch
dpkg-source: info: applying python2to3.patch
dpkg-source: info: applying sepp_not_in_testing.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/54642/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='01543b6c910e4ee8bb75dbf619e74a54'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='54642'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JWaJqQZg/pbuilderrc_7mFG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JWaJqQZg/b1 --logfile b1/build.log q2-fragment-insertion_2024.5.0-1.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/54642/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, qiime (>= 2024.5), python3-pytest, python3-pytest-cov, python3-biom-format, python3-skbio
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19769 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however:
Package qiime is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
Package python3-pytest-cov is not installed.
pbuilder-satisfydepends-dummy depends on python3-biom-format; however:
Package python3-biom-format is not installed.
pbuilder-satisfydepends-dummy depends on python3-skbio; however:
Package python3-skbio is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcrypt20{a} libgfortran5{a} libgnutls30t64{a} libgpg-error0{a} libgssapi-krb5-2{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libjs-bootstrap4{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnorm1t64{a} libp11-kit0{a} libpgm-5.3-0t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsodium23{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-biom-format{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setproctitle{a} python3-setuptools{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.13{a} python3.13-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
curl krb5-locales libarchive-cpio-perl libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx node-jquery publicsuffix python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pil python3-pooch python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-sqlalchemy-ext python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget
0 packages upgraded, 163 newly installed, 0 to remove and 0 not upgraded.
Need to get 95.3 MB of archives. After unpacking 449 MB will be used.
The following packages have unmet dependencies:
pbuilder-satisfydepends-dummy : Depends: python3-skbio which is a virtual package and is not provided by any available package
Unable to resolve dependencies! Giving up...
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcrypt20{a} libgfortran5{a} libgnutls30t64{a} libgpg-error0{a} libgssapi-krb5-2{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libjs-bootstrap4{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnorm1t64{a} libp11-kit0{a} libpgm-5.3-0t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsodium23{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-biom-format{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setproctitle{a} python3-setuptools{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.13{a} python3.13-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
curl krb5-locales libarchive-cpio-perl libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx node-jquery publicsuffix python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pil python3-pooch python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-sqlalchemy-ext python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget
0 packages upgraded, 163 newly installed, 0 to remove and 0 not upgraded.
Need to get 95.3 MB of archives. After unpacking 449 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/54642 and its subdirectories