I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 30 20:28:39 -12 2024 I: pbuilder-time-stamp: 1735633719 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e220249032484be6a668370e5521665f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/pbuilderrc_AbXn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19844 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 44.2 MB of archives. After unpacking 160 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-3 [201 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-13 [95.9 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-3 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.31.2-1 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2~rc1-2 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-3+b3 [51.1 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.8-2 [1451 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.19+dfsg-1 [200 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.11.1-1 [393 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-7 [157 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 cmake i386 3.31.2-1 [13.1 MB] Get: 48 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.23 [90.6 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 54 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-3 [1631 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 debhelper all 13.23 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 googletest all 1.15.2-1 [514 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 62 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libbioparser-dev all 3.1.0-1 [9108 B] Get: 64 http://deb.debian.org/debian unstable/main i386 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libedlib1 i386 1.2.7-6+b2 [17.9 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libedlib-dev i386 1.2.7-6+b2 [22.9 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libgtest-dev i386 1.15.2-1 [272 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libspoa7.0.0 i386 4.1.4-2+b1 [92.7 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libspoa-dev i386 4.1.4-2+b1 [9800 B] Get: 71 http://deb.debian.org/debian unstable/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 72 http://deb.debian.org/debian unstable/main i386 rampler i386 2.1.1-1 [22.5 kB] Fetched 44.2 MB in 1s (49.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19844 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_i386.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-3_i386.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-13_i386.deb ... Unpacking bsdextrautils (2.40.2-13) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-3_all.deb ... Unpacking autopoint (0.22.5-3) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.2-1_all.deb ... Unpacking cmake-data (3.31.2-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../18-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../22-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../23-libcom-err2_1.47.2~rc1-2_i386.deb ... Unpacking libcom-err2:i386 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../24-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../25-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../26-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../28-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libidn2-0:i386. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_i386.deb ... Unpacking libidn2-0:i386 (2.3.7-2+b1) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../30-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:i386. Preparing to unpack .../31-libp11-kit0_0.25.5-3_i386.deb ... Unpacking libp11-kit0:i386 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:i386. Preparing to unpack .../32-libtasn1-6_4.19.0-3+b3_i386.deb ... Unpacking libtasn1-6:i386 (4.19.0-3+b3) ... 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Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o [ 40%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o [ 40%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make 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-ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (2 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) [----------] 5 tests from RaconInitializeTest (19 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001447 s [racon::Polisher::initialize] loaded sequences 0.049515 s [racon::Polisher::initialize] loaded overlaps 0.001065 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.072556 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.111087 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.162508 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.199353 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.246455 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.288026 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.390007 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.440812 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.481176 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.517333 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.566378 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.608737 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.655531 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.677756 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.706852 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.784122 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.810980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.850382 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.898865 s [racon::Polisher::initialize] aligning overlaps [====================] 0.930890 s [racon::Polisher::initialize] transformed data into windows 0.095657 s [racon::Polisher::polish] generating consensus [=> ] 0.645298 s [racon::Polisher::polish] generating consensus [==> ] 1.238874 s [racon::Polisher::polish] generating consensus [===> ] 1.728249 s [racon::Polisher::polish] generating consensus [====> ] 2.113171 s [racon::Polisher::polish] generating consensus [=====> ] 2.330478 s [racon::Polisher::polish] generating consensus [======> ] 2.557661 s [racon::Polisher::polish] generating consensus [=======> ] 2.760590 s [racon::Polisher::polish] generating consensus [========> ] 3.015305 s [racon::Polisher::polish] generating consensus [=========> ] 3.397013 s [racon::Polisher::polish] generating consensus [==========> ] 3.874255 s [racon::Polisher::polish] generating consensus [===========> ] 4.560467 s [racon::Polisher::polish] generating consensus [============> ] 5.473267 s [racon::Polisher::polish] generating consensus [=============> ] 6.699502 s [racon::Polisher::polish] generating consensus [==============> ] 7.954923 s [racon::Polisher::polish] generating consensus [===============> ] 8.559795 s [racon::Polisher::polish] generating consensus [================> ] 9.139813 s [racon::Polisher::polish] generating consensus [=================> ] 9.859668 s [racon::Polisher::polish] generating consensus [==================> ] 10.318433 s [racon::Polisher::polish] generating consensus [===================>] 10.837365 s [racon::Polisher::polish] generating consensus [====================] 13.140151 s [racon::Polisher::] total = 14.263401 s [ OK ] RaconPolishingTest.ConsensusWithQualities (14291 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.001771 s [racon::Polisher::initialize] loaded sequences 0.038261 s [racon::Polisher::initialize] loaded overlaps 0.000583 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.067839 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.104002 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.183970 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.211965 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.241743 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.260270 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.344457 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.396771 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.431140 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.464523 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.509448 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.550177 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.620371 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.671583 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.727094 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.818839 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.842186 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.856515 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.884301 s [racon::Polisher::initialize] aligning overlaps [====================] 0.908336 s [racon::Polisher::initialize] transformed data into windows 0.000835 s [racon::Polisher::polish] generating consensus [=> ] 0.670269 s [racon::Polisher::polish] generating consensus [==> ] 1.442216 s [racon::Polisher::polish] generating consensus [===> ] 2.054256 s [racon::Polisher::polish] generating consensus [====> ] 2.538269 s [racon::Polisher::polish] generating consensus [=====> ] 2.822936 s [racon::Polisher::polish] generating consensus [======> ] 3.132868 s [racon::Polisher::polish] generating consensus [=======> ] 3.420239 s [racon::Polisher::polish] generating consensus [========> ] 3.729405 s [racon::Polisher::polish] generating consensus [=========> ] 4.174288 s [racon::Polisher::polish] generating consensus [==========> ] 4.969782 s [racon::Polisher::polish] generating consensus [===========> ] 5.818688 s [racon::Polisher::polish] generating consensus [============> ] 6.825934 s [racon::Polisher::polish] generating consensus [=============> ] 8.282996 s [racon::Polisher::polish] generating consensus [==============> ] 9.340309 s [racon::Polisher::polish] generating consensus [===============> ] 10.415666 s [racon::Polisher::polish] generating consensus [================> ] 11.397191 s [racon::Polisher::polish] generating consensus [=================> ] 12.335609 s [racon::Polisher::polish] generating consensus [==================> ] 12.926418 s [racon::Polisher::polish] generating consensus [===================>] 13.592675 s [racon::Polisher::polish] generating consensus [====================] 17.508069 s [racon::Polisher::] total = 18.568725 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (18603 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.007792 s [racon::Polisher::initialize] loaded sequences 0.050031 s [racon::Polisher::initialize] loaded overlaps 0.069090 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.009009 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.009562 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.009582 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.009595 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.009612 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009625 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.010163 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.010452 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.010469 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010480 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010491 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.010501 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.010511 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.010521 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.010532 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.010542 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.010552 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.010564 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.010578 s [racon::Polisher::initialize] aligning overlaps [====================] 0.010594 s [racon::Polisher::initialize] transformed data into windows 0.081902 s [racon::Polisher::polish] generating consensus [=> ] 0.663423 s [racon::Polisher::polish] generating consensus [==> ] 1.256254 s [racon::Polisher::polish] generating consensus [===> ] 1.862002 s [racon::Polisher::polish] generating consensus [====> ] 2.324076 s [racon::Polisher::polish] generating consensus [=====> ] 2.504413 s [racon::Polisher::polish] generating consensus [======> ] 2.900317 s [racon::Polisher::polish] generating consensus [=======> ] 3.161166 s [racon::Polisher::polish] generating consensus [========> ] 3.427178 s [racon::Polisher::polish] generating consensus [=========> ] 3.656377 s [racon::Polisher::polish] generating consensus [==========> ] 4.239850 s [racon::Polisher::polish] generating consensus [===========> ] 4.860051 s [racon::Polisher::polish] generating consensus [============> ] 5.755420 s [racon::Polisher::polish] generating consensus [=============> ] 6.864030 s [racon::Polisher::polish] generating consensus [==============> ] 8.075776 s [racon::Polisher::polish] generating consensus [===============> ] 9.198504 s [racon::Polisher::polish] generating consensus [================> ] 9.820312 s [racon::Polisher::polish] generating consensus [=================> ] 10.560277 s [racon::Polisher::polish] generating consensus [==================> ] 11.025093 s [racon::Polisher::polish] generating consensus [===================>] 11.452057 s [racon::Polisher::polish] generating consensus [====================] 12.919770 s [racon::Polisher::] total = 13.332577 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (13424 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000874 s [racon::Polisher::initialize] loaded sequences 0.042889 s [racon::Polisher::initialize] loaded overlaps 0.061398 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.007060 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007430 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.007442 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.007451 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.007460 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.007470 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.007479 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007488 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007496 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007504 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.007521 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007538 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007546 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007555 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007564 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007573 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007582 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007592 s [racon::Polisher::initialize] transformed data into windows 0.000803 s [racon::Polisher::polish] generating consensus [=> ] 0.675093 s [racon::Polisher::polish] generating consensus [==> ] 1.415014 s [racon::Polisher::polish] generating consensus [===> ] 1.926979 s [racon::Polisher::polish] generating consensus [====> ] 2.395116 s [racon::Polisher::polish] generating consensus [=====> ] 2.755525 s [racon::Polisher::polish] generating consensus [======> ] 2.975481 s [racon::Polisher::polish] generating consensus [=======> ] 3.261350 s [racon::Polisher::polish] generating consensus [========> ] 3.723016 s [racon::Polisher::polish] generating consensus [=========> ] 4.097714 s [racon::Polisher::polish] generating consensus [==========> ] 4.907076 s [racon::Polisher::polish] generating consensus [===========> ] 5.686991 s [racon::Polisher::polish] generating consensus [============> ] 6.586024 s [racon::Polisher::polish] generating consensus [=============> ] 7.981014 s [racon::Polisher::polish] generating consensus [==============> ] 9.100418 s [racon::Polisher::polish] generating consensus [===============> ] 10.099249 s [racon::Polisher::polish] generating consensus [================> ] 11.010392 s [racon::Polisher::polish] generating consensus [=================> ] 11.934402 s [racon::Polisher::polish] generating consensus [==================> ] 12.444416 s [racon::Polisher::polish] generating consensus [===================>] 13.047019 s [racon::Polisher::polish] generating consensus [====================] 16.223932 s [racon::Polisher::] total = 16.374106 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16406 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000933 s [racon::Polisher::initialize] loaded sequences 0.497351 s [racon::Polisher::initialize] loaded overlaps 0.036533 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.842309 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.879253 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.914556 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.618555 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.643994 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.686564 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.713494 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.842175 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.926198 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.939873 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.940496 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.998677 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.001253 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.001828 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.034539 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.035141 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.042462 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.142487 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.143091 s [racon::Polisher::initialize] aligning overlaps [====================] 3.143778 s [racon::Polisher::initialize] transformed data into windows 0.080129 s [racon::Polisher::polish] generating consensus [=> ] 2.262057 s [racon::Polisher::polish] generating consensus [==> ] 2.934105 s [racon::Polisher::polish] generating consensus [===> ] 4.157913 s [racon::Polisher::polish] generating consensus [====> ] 4.175595 s [racon::Polisher::polish] generating consensus [=====> ] 5.076484 s [racon::Polisher::polish] generating consensus [======> ] 5.076679 s [racon::Polisher::polish] generating consensus [=======> ] 5.833689 s [racon::Polisher::polish] generating consensus [========> ] 6.781896 s [racon::Polisher::polish] generating consensus [=========> ] 7.237710 s [racon::Polisher::polish] generating consensus [==========> ] 8.653650 s [racon::Polisher::polish] generating consensus [===========> ] 9.950399 s [racon::Polisher::polish] generating consensus [============> ] 11.575430 s [racon::Polisher::polish] generating consensus [=============> ] 14.564335 s [racon::Polisher::polish] generating consensus [==============> ] 15.691927 s [racon::Polisher::polish] generating consensus [===============> ] 17.269608 s [racon::Polisher::polish] generating consensus [================> ] 18.344289 s [racon::Polisher::polish] generating consensus [=================> ] 19.697819 s [racon::Polisher::polish] generating consensus [==================> ] 20.277570 s [racon::Polisher::polish] generating consensus [===================>] 21.597827 s [racon::Polisher::polish] generating consensus [====================] 27.060403 s [racon::Polisher::] total = 31.037441 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (33980 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.001385 s [racon::Polisher::initialize] loaded sequences 0.079379 s [racon::Polisher::initialize] loaded overlaps 0.001068 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.088331 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.130765 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.178396 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.210385 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.255157 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.294189 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.391841 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.439798 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.478213 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.514385 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.559799 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.602612 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.644517 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.664893 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.692851 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.744040 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.766119 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.799724 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.855514 s [racon::Polisher::initialize] aligning overlaps [====================] 0.912393 s [racon::Polisher::initialize] transformed data into windows 0.094933 s [racon::Polisher::polish] generating consensus [=> ] 0.588012 s [racon::Polisher::polish] generating consensus [==> ] 1.573602 s [racon::Polisher::polish] generating consensus [===> ] 2.136563 s [racon::Polisher::polish] generating consensus [====> ] 2.574338 s [racon::Polisher::polish] generating consensus [=====> ] 2.741752 s [racon::Polisher::polish] generating consensus [======> ] 2.949892 s [racon::Polisher::polish] generating consensus [=======> ] 3.160766 s [racon::Polisher::polish] generating consensus [========> ] 3.406390 s [racon::Polisher::polish] generating consensus [=========> ] 3.607066 s [racon::Polisher::polish] generating consensus [==========> ] 4.185293 s [racon::Polisher::polish] generating consensus [===========> ] 4.678380 s [racon::Polisher::polish] generating consensus [============> ] 5.498987 s [racon::Polisher::polish] generating consensus [=============> ] 6.529567 s [racon::Polisher::polish] generating consensus [==============> ] 7.550854 s [racon::Polisher::polish] generating consensus [===============> ] 8.474818 s [racon::Polisher::polish] generating consensus [================> ] 9.459973 s [racon::Polisher::polish] generating consensus [=================> ] 10.145833 s [racon::Polisher::polish] generating consensus [==================> ] 10.556889 s [racon::Polisher::polish] generating consensus [===================>] 11.102668 s [racon::Polisher::polish] generating consensus [====================] 13.021478 s [racon::Polisher::] total = 14.157004 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (14190 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.116096 s [racon::Polisher::initialize] loaded sequences 0.087987 s [racon::Polisher::initialize] loaded overlaps 0.016766 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.097593 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.169262 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.189275 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.233600 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.263409 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.304335 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.369089 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.409064 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.465603 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.511892 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.565573 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.645355 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.705579 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.773586 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.819398 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.890265 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.932797 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.961571 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.990384 s [racon::Polisher::initialize] aligning overlaps [====================] 1.051394 s [racon::Polisher::initialize] transformed data into windows 0.099233 s [racon::Polisher::polish] generating consensus [=> ] 0.418748 s [racon::Polisher::polish] generating consensus [==> ] 0.878930 s [racon::Polisher::polish] generating consensus [===> ] 1.292065 s [racon::Polisher::polish] generating consensus [====> ] 1.292677 s [racon::Polisher::polish] generating consensus [=====> ] 1.550833 s [racon::Polisher::polish] generating consensus [======> ] 1.731023 s [racon::Polisher::polish] generating consensus [=======> ] 1.996670 s [racon::Polisher::polish] generating consensus [========> ] 2.058879 s [racon::Polisher::polish] generating consensus [=========> ] 2.646681 s [racon::Polisher::polish] generating consensus [==========> ] 2.875967 s [racon::Polisher::polish] generating consensus [===========> ] 3.063342 s [racon::Polisher::polish] generating consensus [============> ] 3.134828 s [racon::Polisher::polish] generating consensus [=============> ] 3.366691 s [racon::Polisher::polish] generating consensus [==============> ] 3.366994 s [racon::Polisher::polish] generating consensus [===============> ] 3.914711 s [racon::Polisher::polish] generating consensus [================> ] 3.915003 s [racon::Polisher::polish] generating consensus [=================> ] 4.985279 s [racon::Polisher::polish] generating consensus [==================> ] 5.402920 s [racon::Polisher::polish] generating consensus [===================>] 5.774059 s [racon::Polisher::polish] generating consensus [====================] 5.819780 s [racon::Polisher::] total = 7.192619 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (7221 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.055615 s [racon::Polisher::initialize] loaded sequences 0.053922 s [racon::Polisher::initialize] loaded overlaps 0.019639 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.081784 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.779895 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.429051 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.363997 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.181752 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.421941 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.394098 s [racon::Polisher::initialize] aligning overlaps [========> ] 10.548365 s [racon::Polisher::initialize] aligning overlaps [=========> ] 11.802252 s [racon::Polisher::initialize] aligning overlaps [==========> ] 12.677911 s [racon::Polisher::initialize] aligning overlaps [===========> ] 13.390316 s [racon::Polisher::initialize] aligning overlaps [============> ] 14.483347 s [racon::Polisher::initialize] aligning overlaps [=============> ] 15.666307 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.634191 s [racon::Polisher::initialize] aligning overlaps [===============> ] 17.781741 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.624988 s [racon::Polisher::initialize] aligning overlaps [=================> ] 19.169871 s [racon::Polisher::initialize] aligning overlaps [==================> ] 19.693906 s [racon::Polisher::initialize] aligning overlaps [===================>] 20.022000 s [racon::Polisher::initialize] aligning overlaps [====================] 20.313849 s [racon::Polisher::initialize] transformed data into windows 2.275696 s [racon::Polisher::polish] generating consensus [=> ] 22.181034 s [racon::Polisher::polish] generating consensus [==> ] 37.925089 s [racon::Polisher::polish] generating consensus [===> ] 53.929273 s [racon::Polisher::polish] generating consensus [====> ] 67.406820 s [racon::Polisher::polish] generating consensus [=====> ] 81.307799 s [racon::Polisher::polish] generating consensus [======> ] 97.604180 s [racon::Polisher::polish] generating consensus [=======> ] 114.855472 s [racon::Polisher::polish] generating consensus [========> ] 128.169353 s [racon::Polisher::polish] generating consensus [=========> ] 143.918178 s [racon::Polisher::polish] generating consensus [==========> ] 162.248759 s [racon::Polisher::polish] generating consensus [===========> ] 177.394151 s [racon::Polisher::polish] generating consensus [============> ] 197.540471 s [racon::Polisher::polish] generating consensus [=============> ] 213.531865 s [racon::Polisher::polish] generating consensus [==============> ] 230.414544 s [racon::Polisher::polish] generating consensus [===============> ] 248.762895 s [racon::Polisher::polish] generating consensus [================> ] 259.929907 s [racon::Polisher::polish] generating consensus [=================> ] 279.973941 s [racon::Polisher::polish] generating consensus [==================> ] 299.383525 s [racon::Polisher::polish] generating consensus [===================>] 316.987813 s [racon::Polisher::polish] generating consensus [====================] 331.162630 s [racon::Polisher::] total = 355.873109 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (355913 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.241484 s [racon::Polisher::initialize] loaded sequences 0.077402 s [racon::Polisher::initialize] loaded overlaps 0.020680 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.438057 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.156765 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.009224 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.088924 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.005320 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.628218 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.440908 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.533061 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.860264 s [racon::Polisher::initialize] aligning overlaps [==========> ] 10.095104 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.861757 s [racon::Polisher::initialize] aligning overlaps [============> ] 12.726959 s [racon::Polisher::initialize] aligning overlaps [=============> ] 13.938194 s [racon::Polisher::initialize] aligning overlaps [==============> ] 15.208961 s [racon::Polisher::initialize] aligning overlaps [===============> ] 16.661986 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.323857 s [racon::Polisher::initialize] aligning overlaps [=================> ] 20.068980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 21.081400 s [racon::Polisher::initialize] aligning overlaps [===================>] 22.647466 s [racon::Polisher::initialize] aligning overlaps [====================] 22.933551 s [racon::Polisher::initialize] transformed data into windows 0.033139 s [racon::Polisher::polish] generating consensus [=> ] 30.809157 s [racon::Polisher::polish] generating consensus [==> ] 52.692700 s [racon::Polisher::polish] generating consensus [===> ] 75.211940 s [racon::Polisher::polish] generating consensus [====> ] 92.327531 s [racon::Polisher::polish] generating consensus [=====> ] 112.742204 s [racon::Polisher::polish] generating consensus [======> ] 135.858337 s [racon::Polisher::polish] generating consensus [=======> ] 164.607453 s [racon::Polisher::polish] generating consensus [========> ] 188.383558 s [racon::Polisher::polish] generating consensus [=========> ] 216.647461 s [racon::Polisher::polish] generating consensus [==========> ] 251.435516 s [racon::Polisher::polish] generating consensus [===========> ] 276.181704 s [racon::Polisher::polish] generating consensus [============> ] 310.135687 s [racon::Polisher::polish] generating consensus [=============> ] 336.443278 s [racon::Polisher::polish] generating consensus [==============> ] 369.992569 s [racon::Polisher::polish] generating consensus [===============> ] 394.847347 s [racon::Polisher::polish] generating consensus [================> ] 408.007520 s [racon::Polisher::polish] generating consensus [=================> ] 445.439493 s [racon::Polisher::polish] generating consensus [==================> ] 473.964018 s [racon::Polisher::polish] generating consensus [===================>] 498.612667 s [racon::Polisher::polish] generating consensus [====================] 520.171746 s [racon::Polisher::] total = 544.102957 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (544402 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.302912 s [racon::Polisher::initialize] loaded sequences 0.703981 s [racon::Polisher::initialize] loaded overlaps 0.020558 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.655968 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.428996 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.151608 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.164966 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.029405 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.619446 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.460065 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.558783 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.540221 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.536133 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.284724 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.375611 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.486935 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.459613 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.571858 s [racon::Polisher::initialize] aligning overlaps [================> ] 15.561580 s [racon::Polisher::initialize] aligning overlaps [=================> ] 16.581757 s [racon::Polisher::initialize] aligning overlaps [==================> ] 17.633489 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.747637 s [racon::Polisher::initialize] aligning overlaps [====================] 19.092665 s [racon::Polisher::initialize] transformed data into windows 2.231842 s [racon::Polisher::polish] generating consensus [=> ] 20.646404 s [racon::Polisher::polish] generating consensus [==> ] 36.533093 s [racon::Polisher::polish] generating consensus [===> ] 55.262236 s [racon::Polisher::polish] generating consensus [====> ] 69.038819 s [racon::Polisher::polish] generating consensus [=====> ] 83.618272 s [racon::Polisher::polish] generating consensus [======> ] 100.766304 s [racon::Polisher::polish] generating consensus [=======> ] 118.716547 s [racon::Polisher::polish] generating consensus [========> ] 131.553566 s [racon::Polisher::polish] generating consensus [=========> ] 148.308083 s [racon::Polisher::polish] generating consensus [==========> ] 167.630365 s [racon::Polisher::polish] generating consensus [===========> ] 182.850924 s [racon::Polisher::polish] generating consensus [============> ] 201.747579 s [racon::Polisher::polish] generating consensus [=============> ] 218.477437 s [racon::Polisher::polish] generating consensus [==============> ] 237.894350 s [racon::Polisher::polish] generating consensus [===============> ] 256.882333 s [racon::Polisher::polish] generating consensus [================> ] 267.407728 s [racon::Polisher::polish] generating consensus [=================> ] 289.654313 s [racon::Polisher::polish] generating consensus [==================> ] 310.823803 s [racon::Polisher::polish] generating consensus [===================>] 337.766300 s [racon::Polisher::polish] generating consensus [====================] 351.644344 s [racon::Polisher::] total = 374.040769 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (374196 ms) [----------] 10 tests from RaconPolishingTest (1392657 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1392678 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4511 and its subdirectories I: Current time: Mon Dec 30 20:53:33 -12 2024 I: pbuilder-time-stamp: 1735635213