I: pbuilder: network access will be disabled during build
I: Current time: Mon Feb 24 08:34:52 +14 2025
I: pbuilder-time-stamp: 1740335692
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [spoa_4.1.4-2.dsc]
I: copying [./spoa_4.1.4.orig.tar.gz]
I: copying [./spoa_4.1.4-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: unsupported subcommand
dpkg-source: info: extracting spoa in spoa-4.1.4
dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz
dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-gcc-10.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying shared_and_static.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/D01_modify_environment starting
debug: Running on ionos12-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Feb 23 18:35 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=9a9842e19f874b81bad80c28522fb386
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=10092
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4yjF8EqX/pbuilderrc_8aPF --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4yjF8EqX/b2 --logfile b2/build.log spoa_4.1.4-2.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://46.16.76.132:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19761 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on libbioparser-dev; however:
Package libbioparser-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcereal-dev; however:
Package libcereal-dev is not installed.
pbuilder-satisfydepends-dummy depends on libgtest-dev; however:
Package libgtest-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcpu-features-dev; however:
Package libcpu-features-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcpu-features-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget
0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded.
Need to get 44.9 MB of archives. After unpacking 169 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB]
Get: 2 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-7 [876 kB]
Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-4 [96.4 kB]
Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 13 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 14 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB]
Get: 15 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB]
Get: 17 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 18 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.31.5-2 [2267 kB]
Get: 19 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 20 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 21 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB]
Get: 22 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 23 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB]
Get: 24 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB]
Get: 26 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 27 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB]
Get: 28 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB]
Get: 29 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 30 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB]
Get: 31 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB]
Get: 32 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB]
Get: 34 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB]
Get: 36 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 37 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.12.1-2 [415 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 45 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 librhash1 i386 1.4.5-1 [144 kB]
Get: 47 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.50.0-2 [163 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 cmake i386 3.31.5-2 [13.1 MB]
Get: 49 http://deb.debian.org/debian unstable/main i386 d-shlibs all 0.109 [11.1 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-3 [539 kB]
Get: 52 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 53 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 54 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 55 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 56 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 57 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 58 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 59 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 60 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 61 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB]
Get: 62 http://deb.debian.org/debian unstable/main i386 googletest all 1.16.0-1 [517 kB]
Get: 63 http://deb.debian.org/debian unstable/main i386 libbiosoup-dev all 0.11.0-2 [8000 B]
Get: 64 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 65 http://deb.debian.org/debian unstable/main i386 libbioparser-dev all 3.1.0-1 [9108 B]
Get: 66 http://deb.debian.org/debian unstable/main i386 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB]
Get: 67 http://deb.debian.org/debian unstable/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB]
Get: 68 http://deb.debian.org/debian unstable/main i386 libcpu-features-dev i386 0.9.0-1+b1 [23.0 kB]
Get: 69 http://deb.debian.org/debian unstable/main i386 libgtest-dev i386 1.16.0-1 [274 kB]
Get: 70 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-2 [467 kB]
Fetched 44.9 MB in 1s (71.4 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libproc2-0:i386.
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(Reading database ... 19761 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_i386.deb ...
Unpacking libproc2-0:i386 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.4-7_i386.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../05-file_1%3a5.45-3+b1_i386.deb ...
Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../06-gettext-base_0.23.1-1_i386.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../08-groff-base_1.23.0-7_i386.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../09-bsdextrautils_2.40.4-4_i386.deb ...
Unpacking bsdextrautils (2.40.4-4) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../12-m4_1.4.19-5_i386.deb ...
Unpacking m4 (1.4.19-5) ...
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Preparing to unpack .../13-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
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Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ...
Unpacking cmake-data (3.31.5-2) ...
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Preparing to unpack .../18-libicu72_72.1-6_i386.deb ...
Unpacking libicu72:i386 (72.1-6) ...
Selecting previously unselected package libxml2:i386.
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Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libarchive13t64:i386.
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Unpacking libarchive13t64:i386 (3.7.4-1.1) ...
Selecting previously unselected package libbrotli1:i386.
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Unpacking libbrotli1:i386 (1.1.0-2+b6) ...
Selecting previously unselected package libkrb5support0:i386.
Preparing to unpack .../22-libkrb5support0_1.21.3-4_i386.deb ...
Unpacking libkrb5support0:i386 (1.21.3-4) ...
Selecting previously unselected package libcom-err2:i386.
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Unpacking libcom-err2:i386 (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:i386.
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Unpacking libk5crypto3:i386 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:i386.
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Unpacking libkeyutils1:i386 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:i386.
Preparing to unpack .../26-libkrb5-3_1.21.3-4_i386.deb ...
Unpacking libkrb5-3:i386 (1.21.3-4) ...
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update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
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Initializing package states...
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Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.1.4-2_source.changes
dpkg-buildpackage: info: source package spoa
dpkg-buildpackage: info: source version 4.1.4-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/i386-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON
cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/i386-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON ..
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FetchContent.cmake:1953 (message):
Calling FetchContent_Populate(simde) is deprecated, call
FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to
OLD to allow FetchContent_Populate(simde) to be called directly for now,
but the ability to call it with declared details will be removed completely
in a future version.
Call Stack (most recent call first):
CMakeLists.txt:53 (FetchContent_Populate)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message):
FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source
directory for dependency simde to already be populated. This generally
means it must not be set to true the first time CMake is run in a build
directory. The following source directory should already be populated, but
it doesn't exist:
/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src
Policy CMP0170 controls enforcement of this requirement.
Call Stack (most recent call first):
/usr/share/cmake-3.31/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate)
/usr/share/cmake-3.31/Modules/FetchContent.cmake:1978 (cmake_language)
CMakeLists.txt:53 (FetchContent_Populate)
-- Configuring done (0.7s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
spoa_build_executable
-- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4'
dh_auto_build -O--no-parallel
cd obj-i686-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 5%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse2 -MD -MT CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 5%] Built target spoa_sse2
make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 11%] Building CXX object CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -mavx2 -MD -MT CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 11%] Built target spoa_avx2
make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 17%] Building CXX object CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse4.1 -MD -MT CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 17%] Built target spoa_sse4.1
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 23%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp
[ 29%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp
[ 35%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp
In file included from /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp:3:
/build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_implementation.hpp: In function 'spoa::__mxxxi spoa::_mmxxx_load_si(const __mxxxi*)':
/build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_implementation.hpp:135:54: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi]
135 | inline __mxxxi _mmxxx_load_si(__mxxxi const* mem_addr) {
| ^
[ 41%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp
[ 47%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp
[ 52%] Linking CXX shared library lib/libspoa.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1
/usr/bin/ld: /usr/lib/i386-linux-gnu/libcpu_features.a(string_view.c.o): warning: relocation against `CpuFeatures_StringView_IndexOf' in read-only section `.text'
/usr/bin/ld: warning: creating DT_TEXTREL in a shared object
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/spoa.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/lib/i386-linux-gnu/libcpu_features.a -ldl
/usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so
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[ 52%] Built target spoa
make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 58%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp
[ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp
[ 70%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp
[ 76%] Linking CXX static library lib/libspoa_static.a
/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1
/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/ranlib lib/libspoa_static.a
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[ 76%] Built target spoa_static
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 82%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp
[ 88%] Linking CXX executable bin/spoa
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz /usr/lib/i386-linux-gnu/libcpu_features.a -ldl
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 88%] Built target spoa_exe
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
cd /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build
make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[ 94%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp
[100%] Linking CXX executable bin/spoa_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_test.dir/link.d CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/i386-linux-gnu/libcpu_features.a -ldl /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a
make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
[100%] Built target spoa_test
make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4'
`find . -name spoa_test`
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 22 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 3 tests from SpoaAlignmentTest
[ RUN ] SpoaAlignmentTest.TypeError
[ OK ] SpoaAlignmentTest.TypeError (0 ms)
[ RUN ] SpoaAlignmentTest.EmptyInput
[ OK ] SpoaAlignmentTest.EmptyInput (0 ms)
[ RUN ] SpoaAlignmentTest.LargeInput
[ OK ] SpoaAlignmentTest.LargeInput (0 ms)
[----------] 3 tests from SpoaAlignmentTest (0 ms total)
[----------] 19 tests from SpoaTest
[ RUN ] SpoaTest.Clear
[ OK ] SpoaTest.Clear (4901 ms)
[ RUN ] SpoaTest.Local
[ OK ] SpoaTest.Local (2455 ms)
[ RUN ] SpoaTest.LocalAffine
[ OK ] SpoaTest.LocalAffine (2835 ms)
[ RUN ] SpoaTest.LocalConvex
[ OK ] SpoaTest.LocalConvex (4797 ms)
[ RUN ] SpoaTest.LocalWithQualities
[ OK ] SpoaTest.LocalWithQualities (2461 ms)
[ RUN ] SpoaTest.LocalAffineWithQualities
[ OK ] SpoaTest.LocalAffineWithQualities (2850 ms)
[ RUN ] SpoaTest.LocalConvexWithQualities
[ OK ] SpoaTest.LocalConvexWithQualities (4807 ms)
[ RUN ] SpoaTest.Global
[ OK ] SpoaTest.Global (2391 ms)
[ RUN ] SpoaTest.GlobalAffine
[ OK ] SpoaTest.GlobalAffine (2766 ms)
[ RUN ] SpoaTest.GlobalConvex
[ OK ] SpoaTest.GlobalConvex (4667 ms)
[ RUN ] SpoaTest.GlobalWithQualities
[ OK ] SpoaTest.GlobalWithQualities (2384 ms)
[ RUN ] SpoaTest.GlobalAffineWithQualities
[ OK ] SpoaTest.GlobalAffineWithQualities (2798 ms)
[ RUN ] SpoaTest.GlobalConvexWithQualities
[ OK ] SpoaTest.GlobalConvexWithQualities (4715 ms)
[ RUN ] SpoaTest.SemiGlobal
[ OK ] SpoaTest.SemiGlobal (2379 ms)
[ RUN ] SpoaTest.SemiGlobalAffine
[ OK ] SpoaTest.SemiGlobalAffine (2791 ms)
[ RUN ] SpoaTest.SemiGlobalConvex
[ OK ] SpoaTest.SemiGlobalConvex (4796 ms)
[ RUN ] SpoaTest.SemiGlobalWithQualities
[ OK ] SpoaTest.SemiGlobalWithQualities (2486 ms)
[ RUN ] SpoaTest.SemiGlobalAffineWithQualities
[ OK ] SpoaTest.SemiGlobalAffineWithQualities (2775 ms)
[ RUN ] SpoaTest.SemiGlobalConvexWithQualities
[ OK ] SpoaTest.SemiGlobalConvexWithQualities (4714 ms)
[----------] 19 tests from SpoaTest (64782 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 2 test suites ran. (64783 ms total)
[ PASSED ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:495
AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG
make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--no-parallel
dh_prep -O--no-parallel
dh_auto_install -O--no-parallel
cd obj-i686-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa.so.7.0.0
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa.so
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa_static.a
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaTargets.cmake
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaTargets-release.cmake
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaConfig.cmake
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaConfigVersion.cmake
-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to ""
make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-i686-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--exclude-a \
--movedev debian/tmp/usr/include/spoa usr/include \
--movedev debian/tmp/usr/lib/i386-linux-gnu/cmake /usr/lib/i386-linux-gnu \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libspoa-dev/usr/lib/i386-linux-gnu
install -d -m 755 debian/libspoa7.0.0/usr/lib/i386-linux-gnu
mv debian/tmp/usr/lib/i386-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/i386-linux-gnu
mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/i386-linux-gnu
PKGDEV=libspoa-dev
PKGSHL=libspoa7.0.0
install -d -m 755 debian/libspoa-dev/usr/include
mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include
install -d -m 755 debian/libspoa-dev//usr/lib/i386-linux-gnu
mv debian/tmp/usr/lib/i386-linux-gnu/cmake debian/libspoa-dev//usr/lib/i386-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4'
dh_installdocs -O--no-parallel
dh_installchangelogs -O--no-parallel
dh_installexamples -O--no-parallel
dh_installman -O--no-parallel
dh_installsystemduser -O--no-parallel
dh_perl -O--no-parallel
dh_link -O--no-parallel
dh_strip_nondeterminism -O--no-parallel
dh_compress -O--no-parallel
dh_fixperms -O--no-parallel
dh_missing -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dh_shlibdeps -a -O--no-parallel
dh_installdeb -O--no-parallel
dh_gencontrol -O--no-parallel
dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--no-parallel
dh_builddeb -O--no-parallel
dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_i386.deb'.
dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_i386.deb'.
dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_i386.deb'.
dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_i386.deb'.
dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_i386.deb'.
dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-2_i386.buildinfo
dpkg-genchanges --build=binary -O../spoa_4.1.4-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/10092/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/10092 and its subdirectories
I: Current time: Mon Feb 24 08:39:05 +14 2025
I: pbuilder-time-stamp: 1740335945