Mon May 22 10:43:12 UTC 2023 I: starting to build dialign/bookworm/amd64 on jenkins on '2023-05-22 10:42'
Mon May 22 10:43:12 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/2714/console.log
Mon May 22 10:43:12 UTC 2023 I: Downloading source for bookworm/dialign=2.2.1-11
--2023-05-22 10:43:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-11.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1982 (1.9K) [text/prs.lines.tag]
Saving to: ‘dialign_2.2.1-11.dsc’
0K . 100% 160M=0s
2023-05-22 10:43:12 (160 MB/s) - ‘dialign_2.2.1-11.dsc’ saved [1982/1982]
Mon May 22 10:43:12 UTC 2023 I: dialign_2.2.1-11.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: dialign
Binary: dialign
Architecture: any
Version: 2.2.1-11
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://dialign.gobics.de/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/dialign
Vcs-Git: https://salsa.debian.org/med-team/dialign.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13)
Package-List:
dialign deb science optional arch=any
Checksums-Sha1:
2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz
8a575d34c7070162440ec468839bbb089d319d53 12404 dialign_2.2.1-11.debian.tar.xz
Checksums-Sha256:
046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz
d415e9e1fd0286a551d9f6b73a14f2200df2483ace6410d77d2ecb38e87609dc 12404 dialign_2.2.1-11.debian.tar.xz
Files:
3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz
01eeced94a0f72cbeafc09d593c95694 12404 dialign_2.2.1-11.debian.tar.xz
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Mon May 22 10:43:12 UTC 2023 I: Checking whether the package is not for us
Mon May 22 10:43:12 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net.
Mon May 22 10:43:12 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Mon May 22 10:48:17 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun May 21 22:43:16 -12 2023
I: pbuilder-time-stamp: 1684752196
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [dialign_2.2.1-11.dsc]
I: copying [./dialign_2.2.1.orig.tar.gz]
I: copying [./dialign_2.2.1-11.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Nov 16 19:49:24 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./dialign_2.2.1-11.dsc: no acceptable signature found
dpkg-source: info: extracting dialign in dialign-2.2.1
dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz
dpkg-source: info: unpacking dialign_2.2.1-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch
dpkg-source: info: applying 30_local_doc.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying fix_excess_argument.patch
dpkg-source: info: applying spelling.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1062687/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='95119ead42f64e6d9a593048c8342792'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1062687'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/pbuilderrc_eQdk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/b1 --logfile b1/build.log dialign_2.2.1-11.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos11-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 00:40 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 22:02 more
-rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount
-rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 22:02 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/1062687/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Fetched 18.7 MB in 1s (28.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
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(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign_2.2.1-11_source.changes
dpkg-buildpackage: info: source package dialign
dpkg-buildpackage: info: source version 2.2.1-11
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/dialign-2.2.1'
find src/ -name '*.o' -delete
dh_clean src/dialign2-2
make[1]: Leaving directory '/build/dialign-2.2.1'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/dialign-2.2.1'
## CFLAGS = -c -I-DCONS -O2
dh_auto_build --sourcedirectory=src
cd src && make -j15 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/dialign-2.2.1/src'
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c
anchor.c: In function 'multi_anc_read':
anchor.c:118:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration]
118 | erreur("\n\n cannot find file with anchor points \n\n\n");
| ^~~~~~
anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration]
131 | if( word_count( line ) == 6 ) {
| ^~~~~~~~~~
regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int]
154 | seq_parse( char *mot_regex ) {
| ^~~~~~~~~
input.c: In function 'exclude_frg_read':
input.c:65:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration]
65 | erreur("\n\n cannot find file with excluded fragments \n\n\n");
| ^~~~~~
output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int]
64 | extern plot_calc( int num , int e_len, float *w_count, float *pl,
| ^~~~~~~~~
output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int]
66 | extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
| ^~~~~~~~~~~~~~
functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int]
856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
| ^~~~~~~~~~~~~~
functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int]
885 | plot_calc( int num , int e_len, float *w_count, float *pl,
| ^~~~~~~~~
dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int]
261 | main(int argc, char **argv)
| ^~~~
dialign.c: In function 'main':
dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration]
392 | regex_parse( mot_regex ) ;
| ^~~~~~~~~~~
dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration]
487 | seq_parse( mot_regex ) ;
| ^~~~~~~~~
dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration]
619 | exclude_frg_read ( input_name , exclude_list ) ;
| ^~~~~~~~~~~~~~~~
gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/dialign-2.2.1/src'
make[1]: Leaving directory '/build/dialign-2.2.1'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/dialign/
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'dialign' in '../dialign_2.2.1-11_amd64.deb'.
dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-11_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../dialign_2.2.1-11_amd64.buildinfo
dpkg-genchanges --build=binary -O../dialign_2.2.1-11_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1062687 and its subdirectories
I: Current time: Sun May 21 22:48:16 -12 2023
I: pbuilder-time-stamp: 1684752496
Mon May 22 10:48:17 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Mon May 22 10:48:17 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Mon May 22 10:49:45 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Mon May 22 10:49:46 UTC 2023 I: dialign_2.2.1-11_amd64.changes:
Format: 1.8
Date: Tue, 17 Nov 2020 08:41:55 +0100
Source: dialign
Binary: dialign dialign-dbgsym
Architecture: amd64
Version: 2.2.1-11
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dialign - Segment-based multiple sequence alignment
Changes:
dialign (2.2.1-11) unstable; urgency=medium
.
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
.
[ Andreas Tille ]
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* No tab in license text (routine-update)
* Trim trailing whitespace.
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
* watch file standard 4 (routine-update)
Checksums-Sha1:
b444f7e50fe49771dc55981d0435a8398797f892 72332 dialign-dbgsym_2.2.1-11_amd64.deb
0b49c2bda07b5585038aa9036623017a6805afa6 5091 dialign_2.2.1-11_amd64.buildinfo
75f4aa822475d2054c575f345cdf3b7b8cc55aa7 137872 dialign_2.2.1-11_amd64.deb
Checksums-Sha256:
85a107b1a76759df548cc6a84cdfefc9070db3c23889df6ce218665a4a48491e 72332 dialign-dbgsym_2.2.1-11_amd64.deb
2156fbfa08d6e04d91c5e89578803a901b358744ebb3effe8a094ce00e7a13c3 5091 dialign_2.2.1-11_amd64.buildinfo
723ac53d9fce1b051a2610f372eaad98296aa135ef9717843879b083754d2152 137872 dialign_2.2.1-11_amd64.deb
Files:
4564e4e106acf3ab2ae7daad4250d668 72332 debug optional dialign-dbgsym_2.2.1-11_amd64.deb
281b93b2829a66409ab35352a9969495 5091 science optional dialign_2.2.1-11_amd64.buildinfo
d6cbdc08f383356204921497367b0991 137872 science optional dialign_2.2.1-11_amd64.deb
Mon May 22 10:49:47 UTC 2023 I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/dialign_2.2.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/dialign_2.2.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/dialign_2.2.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/b1/dialign_2.2.1-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yChAUODL/b2/dialign_2.2.1-11_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.367s)
0.367s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.023s)
0.023s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Mon May 22 10:49:48 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Mon May 22 10:49:48 UTC 2023 I: dialign from bookworm built successfully and reproducibly on amd64.
Mon May 22 10:49:49 UTC 2023 I: Submitting .buildinfo files to external archives:
Mon May 22 10:49:49 UTC 2023 I: Submitting 8.0K b1/dialign_2.2.1-11_amd64.buildinfo.asc
Mon May 22 10:49:49 UTC 2023 I: Submitting 8.0K b2/dialign_2.2.1-11_amd64.buildinfo.asc
Mon May 22 10:49:50 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon May 22 10:49:50 UTC 2023 I: Done submitting .buildinfo files.
Mon May 22 10:49:50 UTC 2023 I: Removing signed dialign_2.2.1-11_amd64.buildinfo.asc files:
removed './b1/dialign_2.2.1-11_amd64.buildinfo.asc'
removed './b2/dialign_2.2.1-11_amd64.buildinfo.asc'