Wed May 10 17:03:02 UTC 2023 I: starting to build pilercr/bookworm/amd64 on jenkins on '2023-05-10 17:02' Wed May 10 17:03:02 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/16910/console.log Wed May 10 17:03:02 UTC 2023 I: Downloading source for bookworm/pilercr=1.06+dfsg-5 --2023-05-10 17:03:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) [text/prs.lines.tag] Saving to: ‘pilercr_1.06+dfsg-5.dsc’ 0K . 100% 128M=0s 2023-05-10 17:03:02 (128 MB/s) - ‘pilercr_1.06+dfsg-5.dsc’ saved [1986/1986] Wed May 10 17:03:02 UTC 2023 I: pilercr_1.06+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pilercr Binary: pilercr Architecture: any Version: 1.06+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys Homepage: https://www.drive5.com/pilercr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pilercr Vcs-Git: https://salsa.debian.org/med-team/pilercr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: pilercr deb science optional arch=any Checksums-Sha1: ec00e5c5e116ca933b7e23d19f8a2a630352a788 80128 pilercr_1.06+dfsg.orig.tar.xz b5cb10848f0ea4cf91289569d6f757af38ac2486 8600 pilercr_1.06+dfsg-5.debian.tar.xz Checksums-Sha256: 377d88b76960483a33e4f620bab180e5f994b43e550961ca3e3ea3b77d64ccc9 80128 pilercr_1.06+dfsg.orig.tar.xz 4bcc78676e4663ada0e8f799cbecbd3d02f7be36a1edca83c2e0299b61824f3f 8600 pilercr_1.06+dfsg-5.debian.tar.xz Files: ba866a26a14562fb2e3c425ad601ca08 80128 pilercr_1.06+dfsg.orig.tar.xz d7857b8b6aa4bdd1517a1d0500aa5367 8600 pilercr_1.06+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaIaUUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFluQ/+JH4FmdIhA5NEt6Cqt2P25LP5PTMP kcN+VtGUlmLGN1L1qIr6y9Hk1KfEgSyv6AY9Rq+z8Y9nWRroghkhXvsQr87W2z4H EdZHXQjkixwRbqshaRZ4jGv3N7ipchrhkvXxlqc026FGGsEHD5laEZ9qBvMbkWSK Js+xxQ6sYPq/KR3PK2cXVAfoM1lgNM+E14oweAdqa56BKlt8W+Mv7YAUgXwFoI/2 g0LBb/oOYtahutL3LtSffXXlC1UjZ+QWLcQ079W6km4ZaWDIcf82XryqBSYyswRf 0WshkSlvvV6VoSMZFWjNgTUdS0smDV+bprfhKOeayNXZZ4bIceMoYUr21o91PwZG rfbSPZMVFwQv4kw3DI3lej4FmjY0wkTuXupgN1rBGxH+vQ0dZfeyXN+gxC2Y/Ah6 1wJV8s8n/5VTXWpfb7N4vDy6CEpg6bFvppDuuxloZ3PQjGxinmqLIx5yv/UQ/9EN 1HWW09WkdhmTQ9EW61nRecNThuYVQFE4Mq4suH8c9fH0Oz6yZbstcyrKgSdvfaJL HZEWBnwgectke4f9VPRgOMJFF1STR1Wg4JPZ4joUJ5fmkA3QVI4P8mcFuSI1uhxZ 4u9Fq+ByIRK3oRj/aSFtmC2a/1f93Nq5BwuF548slFxuM7S11YRf/oJ1bCko58wi qf8qINh8TWZY0D0= =uLsb -----END PGP SIGNATURE----- Wed May 10 17:03:02 UTC 2023 I: Checking whether the package is not for us Wed May 10 17:03:02 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed May 10 17:03:02 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed May 10 17:07:14 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 11 11:26:16 -12 2024 I: pbuilder-time-stamp: 1718148376 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 15 20:28:21 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1837064/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='40715cee0d704c329f0ef7957fc8e6b5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1837064' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/pbuilderrc_HiGA --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1837064/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After unpacking 73.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Fetched 18.9 MB in 2s (7739 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/pilercr-1.06+dfsg' dpkg-architecture -f -aamd64 -c dh_auto_build -- 'GPP=$(CXX)' make -j16 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/pilercr-1.06+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c dp.cpp -o dp.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c info.cpp -o info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c log.cpp -o log.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c main.cpp -o main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o options.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -o params.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o seq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_amd64.deb'. dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_amd64.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1837064 and its subdirectories I: Current time: Tue Jun 11 11:30:13 -12 2024 I: pbuilder-time-stamp: 1718148613 Wed May 10 17:07:15 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed May 10 17:07:15 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed May 10 17:10:13 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed May 10 17:10:14 UTC 2023 I: pilercr_1.06+dfsg-5_amd64.changes: Format: 1.8 Date: Mon, 16 Aug 2021 13:54:23 +0530 Source: pilercr Binary: pilercr pilercr-dbgsym Architecture: amd64 Version: 1.06+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pilercr - software for finding CRISPR repeats Changes: pilercr (1.06+dfsg-5) unstable; urgency=medium . [ Shruti Sridhar ] * Team upload. * Add test data * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * d/tests/get-test-data: Add script for fetching data * d/docs: Install get-test-data script Checksums-Sha1: e1d84f538970ef08cbe8cd99cd42f6e0c00660c9 1188096 pilercr-dbgsym_1.06+dfsg-5_amd64.deb d9af848f80ba06c1ac795e737b9cbe04dd344066 5207 pilercr_1.06+dfsg-5_amd64.buildinfo 988dd5246e174b74eaf361393f95db4be57eb1bd 115176 pilercr_1.06+dfsg-5_amd64.deb Checksums-Sha256: 94ec74248a338b92ed2b79a2e830bc06621d3945afc3fd3a4ac8da0bf2225801 1188096 pilercr-dbgsym_1.06+dfsg-5_amd64.deb 2ff8d61376e7e32180e5541ba907fbbf52710232c7e5cbe4111fdb43838cbcf8 5207 pilercr_1.06+dfsg-5_amd64.buildinfo 4552dc2629caf827b5f798d45ef120ac726f839fd34bbde701148a1e2aa4d430 115176 pilercr_1.06+dfsg-5_amd64.deb Files: 72cbdebc5c9fee5c49916f38e8e2ad5c 1188096 debug optional pilercr-dbgsym_1.06+dfsg-5_amd64.deb 847af195463c58283be62e712523070e 5207 science optional pilercr_1.06+dfsg-5_amd64.buildinfo 377d5802f94a48b0d78a6c49b98d4369 115176 science optional pilercr_1.06+dfsg-5_amd64.deb Wed May 10 17:10:15 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/pilercr_1.06+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/pilercr_1.06+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/pilercr_1.06+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/b1/pilercr_1.06+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.l2voI4R4/b2/pilercr_1.06+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.355s) 0.355s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.033s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed May 10 17:10:17 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed May 10 17:10:17 UTC 2023 I: pilercr from bookworm built successfully and reproducibly on amd64. Wed May 10 17:10:18 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 10 17:10:18 UTC 2023 I: Submitting 8.0K b1/pilercr_1.06+dfsg-5_amd64.buildinfo.asc Wed May 10 17:10:19 UTC 2023 I: Submitting 8.0K b2/pilercr_1.06+dfsg-5_amd64.buildinfo.asc Wed May 10 17:10:19 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 10 17:10:19 UTC 2023 I: Done submitting .buildinfo files. Wed May 10 17:10:19 UTC 2023 I: Removing signed pilercr_1.06+dfsg-5_amd64.buildinfo.asc files: removed './b1/pilercr_1.06+dfsg-5_amd64.buildinfo.asc' removed './b2/pilercr_1.06+dfsg-5_amd64.buildinfo.asc'