Wed Apr 26 17:55:41 UTC 2023 I: starting to build python-pangolearn/bookworm/amd64 on jenkins on '2023-04-26 17:55'
Wed Apr 26 17:55:41 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/5175/console.log
Wed Apr 26 17:55:41 UTC 2023 I: Downloading source for bookworm/python-pangolearn=2022-07-09+dfsg-2
--2023-04-26 17:55:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pangolearn/python-pangolearn_2022-07-09%2bdfsg-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2335 (2.3K) [text/prs.lines.tag]
Saving to: ‘python-pangolearn_2022-07-09+dfsg-2.dsc’
0K .. 100% 204M=0s
2023-04-26 17:55:41 (204 MB/s) - ‘python-pangolearn_2022-07-09+dfsg-2.dsc’ saved [2335/2335]
Wed Apr 26 17:55:41 UTC 2023 I: python-pangolearn_2022-07-09+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-pangolearn
Binary: python3-pangolearn
Architecture: all
Version: 2022-07-09+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/cov-lineages/pangoLEARN
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-pangolearn
Vcs-Git: https://salsa.debian.org/med-team/python-pangolearn.git
Testsuite: autopkgtest-pkg-python
Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools
Package-List:
python3-pangolearn deb python optional arch=all
Checksums-Sha1:
58a5bd13a8080dd91f607beefe9fd206ce3e3754 43902424 python-pangolearn_2022-07-09+dfsg.orig.tar.xz
ca539cad2e8eeb62642f8e5ee552c6d6a231f0b7 2804 python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz
Checksums-Sha256:
7565801a14d9e933e61d905aebf2680f50b9738d0bc3d8b2996a72c863016ca2 43902424 python-pangolearn_2022-07-09+dfsg.orig.tar.xz
1cf0b150f5cd2bc6c582a33be08db5407e01100c447564ab49e02d07597ceac1 2804 python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz
Files:
812208bde15323ed722bf41ed01a838b 43902424 python-pangolearn_2022-07-09+dfsg.orig.tar.xz
5c029b25faa7bd868ce0d4d22d5ec5b5 2804 python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz
Dgit: 1f94ca3bba1b45f2fad3b0b556d743e0140c413c debian archive/debian/2022-07-09+dfsg-2 https://git.dgit.debian.org/python-pangolearn
-----BEGIN PGP SIGNATURE-----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=6FGZ
-----END PGP SIGNATURE-----
Wed Apr 26 17:55:41 UTC 2023 I: Checking whether the package is not for us
Wed Apr 26 17:55:41 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Wed Apr 26 17:55:41 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Wed Apr 26 17:59:21 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Apr 26 05:55:46 -12 2023
I: pbuilder-time-stamp: 1682531746
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-pangolearn_2022-07-09+dfsg-2.dsc]
I: copying [./python-pangolearn_2022-07-09+dfsg.orig.tar.xz]
I: copying [./python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Feb 6 06:07:41 2023 -12
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pangolearn_2022-07-09+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-pangolearn in python-pangolearn-2022-07-09+dfsg
dpkg-source: info: unpacking python-pangolearn_2022-07-09+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying pep440.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3623901/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='26b4edd6237746feaa6a62c676c711d6'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3623901'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/pbuilderrc_1Zfn --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/b1 --logfile b1/build.log python-pangolearn_2022-07-09+dfsg-2.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos1-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 00:40 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 22:02 more
-rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount
-rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 22:02 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/3623901/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.5 MB of archives. After unpacking 100 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 25.5 MB in 1s (34.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ...
Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ...
Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:amd64 (3.11.2-6) ...
Setting up libexpat1:amd64 (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19912 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ...
Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.0.0_all.deb ...
Unpacking media-types (10.0.0) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:amd64.
Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ...
Unpacking libreadline8:amd64 (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:amd64.
Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ...
Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ...
Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package python3.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20346 files and directories currently installed.)
Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../09-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../10-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../23-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../25-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../31-python3-lib2to3_3.11.2-2_all.deb ...
Unpacking python3-lib2to3 (3.11.2-2) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../32-python3-distutils_3.11.2-2_all.deb ...
Unpacking python3-distutils (3.11.2-2) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../33-dh-python_5.20230130_all.deb ...
Unpacking dh-python (5.20230130) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../34-python3-all_3.11.2-1+b1_amd64.deb ...
Unpacking python3-all (3.11.2-1+b1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../35-python3-pkg-resources_66.1.1-1_all.deb ...
Unpacking python3-pkg-resources (66.1.1-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../36-python3-setuptools_66.1.1-1_all.deb ...
Unpacking python3-setuptools (66.1.1-1) ...
Setting up media-types (10.0.0) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up libreadline8:amd64 (8.2-1.3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-all (3.11.2-1+b1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/python-pangolearn-2022-07-09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pangolearn_2022-07-09+dfsg-2_source.changes
dpkg-buildpackage: info: source package python-pangolearn
dpkg-buildpackage: info: source version 2022-07-09+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running clean
removing '/build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running build
running build_py
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN
copying pangoLEARN/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/utils.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/processOutputFile.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/pangoLEARNRandomForest_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/pangoLEARNDecisionTree_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/get_lineage_positions.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/getDecisionTreeRules.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/downsample.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts
copying pangoLEARN/scripts/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts
running egg_info
creating pangoLEARN.egg-info
writing pangoLEARN.egg-info/PKG-INFO
writing dependency_links to pangoLEARN.egg-info/dependency_links.txt
writing entry points to pangoLEARN.egg-info/entry_points.txt
writing top-level names to pangoLEARN.egg-info/top_level.txt
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
reading manifest file 'pangoLEARN.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pangoLEARN.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pangoLEARN.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pangoLEARN.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pangoLEARN.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/decisionTree_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/decision_tree_rules.zip -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineageTree.pb -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineage_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineages.downsample.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineages.hash.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/randomForest_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:240: cd /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build; python3.11 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-pangolearn/ -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pangoLEARN.egg-info/PKG-INFO
writing dependency_links to pangoLEARN.egg-info/dependency_links.txt
writing entry points to pangoLEARN.egg-info/entry_points.txt
writing top-level names to pangoLEARN.egg-info/top_level.txt
reading manifest file 'pangoLEARN.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pangoLEARN.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pangoLEARN.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pangoLEARN.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pangoLEARN.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running install_lib
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__pycache__
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/randomForest_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineages.hash.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineages.downsample.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineage_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineageTree.pb -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/decision_tree_rules.zip -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/decisionTree_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/downsample.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/getDecisionTreeRules.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/get_lineage_positions.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/pangoLEARNDecisionTree_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/pangoLEARNRandomForest_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/processOutputFile.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/utils.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/downsample.py to downsample.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/getDecisionTreeRules.py to getDecisionTreeRules.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/get_lineage_positions.py to get_lineage_positions.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/pangoLEARNDecisionTree_v1.py to pangoLEARNDecisionTree_v1.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/pangoLEARNRandomForest_v1.py to pangoLEARNRandomForest_v1.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/processOutputFile.py to processOutputFile.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/utils.py to utils.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__init__.py to __init__.cpython-311.pyc
running install_egg_info
Copying pangoLEARN.egg-info to /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN-2022.7.9.egg-info
Skipping SOURCES.txt
running install_scripts
Installing pangoLEARN script to /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_install
rm -rf debian/python3-pangolearn/usr/bin
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_python3
# Follow request of ftpmaster https://alioth-lists.debian.net/pipermail/debian-med-packaging/2022-October/104236.html
mkdir -p debian/python3-pangolearn/usr/share/python3-pangolearn
mv debian/python3-pangolearn/usr/lib/python3/dist-packages/pangoLEARN/data debian/python3-pangolearn/usr/share/python3-pangolearn
dh_link /usr/share/python3-pangolearn/data /usr/lib/python3/dist-packages/pangoLEARN/data
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
debian/rules execute_after_dh_fixperms
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
chmod -v -x /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/decisionTree_recall_report.csv
mode of '/build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/decisionTree_recall_report.csv' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
chmod -v -x /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/randomForest_recall_report.csv
mode of '/build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/randomForest_recall_report.csv' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pangolearn' in '../python3-pangolearn_2022-07-09+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../python-pangolearn_2022-07-09+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3623901 and its subdirectories
I: Current time: Wed Apr 26 05:59:19 -12 2023
I: pbuilder-time-stamp: 1682531959
Wed Apr 26 17:59:21 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net.
Wed Apr 26 17:59:21 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net.
Wed Apr 26 18:00:47 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net.
Wed Apr 26 18:00:47 UTC 2023 I: python-pangolearn_2022-07-09+dfsg-2_amd64.changes:
Format: 1.8
Date: Mon, 06 Feb 2023 18:41:52 +0100
Source: python-pangolearn
Binary: python3-pangolearn
Architecture: all
Version: 2022-07-09+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python3-pangolearn - store of the trained model for pangolin to access
Closes: 1030467
Changes:
python-pangolearn (2022-07-09+dfsg-2) unstable; urgency=medium
.
* Team upload.
* pep440.patch: add; adjust upstream version number. (Closes: #1030467)
* d/rules: unset spurious executable bits on csv files.
Checksums-Sha1:
b23c2e66c954dbc72343ce958f2882d21d08b8f6 5523 python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo
f70d855a8bfdd827e98aa017e9bbfb70e29f594f 43880172 python3-pangolearn_2022-07-09+dfsg-2_all.deb
Checksums-Sha256:
eac576d0f6ccc0869e1a937a32cd91bcf7890b6fc98c9170d4e855ece66f2e28 5523 python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo
b6d32f89ebd45e45102c4d75980373d4ce0fe732ff3ca320b388537814436daf 43880172 python3-pangolearn_2022-07-09+dfsg-2_all.deb
Files:
f4a66f1109faa20cad2e6e9311b83eed 5523 science optional python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo
fcb456ea0d82193da5e073da3e2c697f 43880172 python optional python3-pangolearn_2022-07-09+dfsg-2_all.deb
Wed Apr 26 18:00:50 UTC 2023 I: diffoscope 241 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/python-pangolearn_2022-07-09+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/python-pangolearn_2022-07-09+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/python-pangolearn_2022-07-09+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/b1/python-pangolearn_2022-07-09+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UCfpI6ls/b2/python-pangolearn_2022-07-09+dfsg-2_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 1.411s)
1.411s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 1.015s)
1.015s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.001s)
0.001s 1 call specialize
Wed Apr 26 18:00:54 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists.
Wed Apr 26 18:00:54 UTC 2023 I: python-pangolearn from bookworm built successfully and reproducibly on amd64.
Wed Apr 26 18:00:55 UTC 2023 I: Submitting .buildinfo files to external archives:
Wed Apr 26 18:00:55 UTC 2023 I: Submitting 8.0K b1/python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo.asc
Wed Apr 26 18:00:57 UTC 2023 I: Submitting 8.0K b2/python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo.asc
Wed Apr 26 18:00:57 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Apr 26 18:00:57 UTC 2023 I: Done submitting .buildinfo files.
Wed Apr 26 18:00:57 UTC 2023 I: Removing signed python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo.asc files:
removed './b1/python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo.asc'
removed './b2/python-pangolearn_2022-07-09+dfsg-2_amd64.buildinfo.asc'