Fri Apr 21 19:47:35 UTC 2023 I: starting to build quorum/bookworm/amd64 on jenkins on '2023-04-21 19:47'
Fri Apr 21 19:47:35 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/10604/console.log
Fri Apr 21 19:47:35 UTC 2023 I: Downloading source for bookworm/quorum=1.1.1-7
--2023-04-21 19:47:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/quorum/quorum_1.1.1-7.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2066 (2.0K) [text/prs.lines.tag]
Saving to: ‘quorum_1.1.1-7.dsc’
0K .. 100% 135M=0s
2023-04-21 19:47:36 (135 MB/s) - ‘quorum_1.1.1-7.dsc’ saved [2066/2066]
Fri Apr 21 19:47:36 UTC 2023 I: quorum_1.1.1-7.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: quorum
Binary: quorum
Architecture: any
Version: 1.1.1-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/gmarcais/Quorum
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/quorum
Vcs-Git: https://salsa.debian.org/med-team/quorum.git
Testsuite: autopkgtest
Testsuite-Triggers: filtlong-data
Build-Depends: debhelper-compat (= 13), libjellyfish-2.0-dev, jellyfish, yaggo, pkg-config
Package-List:
quorum deb science optional arch=any
Checksums-Sha1:
a3524ae371080269a4d79ad2cc501ebd24bddf85 2277528 quorum_1.1.1.orig.tar.gz
48c4f93e3df48db8683c27ca3ac98d2b50e6a2fa 6784 quorum_1.1.1-7.debian.tar.xz
Checksums-Sha256:
0fb308d5b02f43e1e668a01b706aba7bbd61a7f24a4aab57d0261170d34a396a 2277528 quorum_1.1.1.orig.tar.gz
6c263d21212172d6e5b6f6ae22c6fe16d0f0a7ae2d1698395d6a0a61589528c9 6784 quorum_1.1.1-7.debian.tar.xz
Files:
656be64da3b0837f4195aa9545b9b4b7 2277528 quorum_1.1.1.orig.tar.gz
5c075bb5cd7428aedbba8c3d79c767af 6784 quorum_1.1.1-7.debian.tar.xz
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Fri Apr 21 19:47:36 UTC 2023 I: Checking whether the package is not for us
Fri Apr 21 19:47:36 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net.
Fri Apr 21 19:47:36 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Fri Apr 21 19:52:43 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu May 23 14:10:40 -12 2024
I: pbuilder-time-stamp: 1716516640
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [quorum_1.1.1-7.dsc]
I: copying [./quorum_1.1.1.orig.tar.gz]
I: copying [./quorum_1.1.1-7.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Jul 24 19:41:06 2022 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./quorum_1.1.1-7.dsc: no acceptable signature found
dpkg-source: info: extracting quorum in quorum-1.1.1
dpkg-source: info: unpacking quorum_1.1.1.orig.tar.gz
dpkg-source: info: unpacking quorum_1.1.1-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying gcc-12.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1404723/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='1f7e0b7a05c64ee5a80bd2cd28fd0666'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1404723'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/pbuilderrc_KWG7 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/b1 --logfile b1/build.log quorum_1.1.1-7.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 2023 more
-rwsr-xr-x 1 root root 59704 Mar 22 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/1404723/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libjellyfish-2.0-dev, jellyfish, yaggo, pkg-config
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libjellyfish-2.0-dev; however:
Package libjellyfish-2.0-dev is not installed.
pbuilder-satisfydepends-dummy depends on jellyfish; however:
Package jellyfish is not installed.
pbuilder-satisfydepends-dummy depends on yaggo; however:
Package yaggo is not installed.
pbuilder-satisfydepends-dummy depends on pkg-config; however:
Package pkg-config is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} jellyfish{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjellyfish-2.0-2{a} libjellyfish-2.0-dev{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libpsl5{a} librtmp1{a} libruby{a} libruby3.1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} rake{a} ruby{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} yaggo{a}
The following packages are RECOMMENDED but will NOT be installed:
curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget zip
0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded.
Need to get 30.2 MB of archives. After unpacking 113 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-8 [380 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 libjellyfish-2.0-2 amd64 2.3.0-15+b3 [63.2 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 jellyfish amd64 2.3.0-15+b3 [789 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libjellyfish-2.0-dev amd64 2.3.0-15+b3 [136 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7 [663 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB]
Get: 59 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get: 60 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB]
Get: 61 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB]
Get: 62 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7 [5401 kB]
Get: 63 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B]
Get: 64 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB]
Get: 65 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB]
Get: 66 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB]
Get: 67 http://deb.debian.org/debian bookworm/main amd64 yaggo all 1.5.10-6 [21.2 kB]
Fetched 30.2 MB in 1s (48.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking yaggo (1.5.10-6) ...
Setting up libhtscodecs2:amd64 (1.3.0-4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libpsl5:amd64 (0.21.2-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:amd64 (0.2.5-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:amd64 (1.0.9-2+b6) ...
Setting up libnghttp2-14:amd64 (1.52.0-1) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up libdeflate0:amd64 (1.14-1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ...
Setting up libjellyfish-2.0-2:amd64 (2.3.0-15+b3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpkgconf3:amd64 (1.8.1-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:amd64 (6.4-2) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up autopoint (0.21-12) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ...
Setting up autoconf (2.71-3) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:amd64 (1.10.0-3+b1) ...
Setting up openssl (3.0.8-1) ...
Setting up libbsd0:amd64 (0.11.7-2) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libjellyfish-2.0-dev (2.3.0-15+b3) ...
Setting up libtool (2.4.7-5) ...
Setting up libedit2:amd64 (3.1-20221030-2) ...
Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Setting up pkgconf:amd64 (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up pkg-config:amd64 (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libcurl3-gnutls:amd64 (7.88.1-8) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libhts3:amd64 (1.16+ds-3) ...
Setting up debhelper (13.11.4) ...
Setting up jellyfish (2.3.0-15+b3) ...
Setting up rake (13.0.6-3) ...
Setting up libruby3.1:amd64 (3.1.2-7) ...
Setting up libruby:amd64 (1:3.1) ...
Setting up ruby (1:3.1) ...
Setting up ruby3.1 (3.1.2-7) ...
Setting up yaggo (1.5.10-6) ...
Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ...
Setting up ruby-rubygems (3.3.15-2) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/quorum-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../quorum_1.1.1-7_source.changes
dpkg-buildpackage: info: source package quorum
dpkg-buildpackage: info: source version 1.1.1-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'.
libtoolize: copying file 'build-aux/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:37: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:37: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:37: the top level
configure.ac:44: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:44: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:44: the top level
configure.ac:49: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:49: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
./lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
configure.ac:49: the top level
configure.ac:72: warning: AC_OUTPUT should be used without arguments.
configure.ac:72: You should run autoupdate.
configure.ac:10: installing 'build-aux/compile'
configure.ac:10: installing 'build-aux/config.guess'
configure.ac:10: installing 'build-aux/config.sub'
configure.ac:6: installing 'build-aux/install-sh'
configure.ac:6: installing 'build-aux/missing'
Makefile.am: installing 'build-aux/depcomp'
parallel-tests: installing 'build-aux/test-driver'
dh_auto_configure -O--no-parallel
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
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checking for sys/stat.h... yes
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checking if gcc supports -fno-rtti -fno-exceptions... no
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checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for pthread_create in -lpthread... yes
checking for clock_gettime in -lrt... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for yaggo... /usr/bin/yaggo
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_build -O--no-parallel
make -j1
make[1]: Entering directory '/build/quorum-1.1.1'
yaggo src/error_correct_reads_cmdline.yaggo src/error_correct_reads_cmdline.hpp
/usr/bin/yaggo --license ./header-license -o src/error_correct_reads_cmdline.hpp src/error_correct_reads_cmdline.yaggo
yaggo src/create_database_cmdline.yaggo src/create_database_cmdline.hpp
/usr/bin/yaggo --license ./header-license -o src/create_database_cmdline.hpp src/create_database_cmdline.yaggo
yaggo src/merge_mate_pairs_cmdline.yaggo src/merge_mate_pairs_cmdline.hpp
/usr/bin/yaggo --license ./header-license -o src/merge_mate_pairs_cmdline.hpp src/merge_mate_pairs_cmdline.yaggo
yaggo src/split_mate_pairs_cmdline.yaggo src/split_mate_pairs_cmdline.hpp
/usr/bin/yaggo --license ./header-license -o src/split_mate_pairs_cmdline.hpp src/split_mate_pairs_cmdline.yaggo
make all-am
make[2]: Entering directory '/build/quorum-1.1.1'
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/error_correct_reads.o src/error_correct_reads.cc
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/err_log.o src/err_log.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/create_database.o src/create_database.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_create_database src/create_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_create_database src/create_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/merge_mate_pairs.o src/merge_mate_pairs.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o merge_mate_pairs src/merge_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o merge_mate_pairs src/merge_mate_pairs.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/split_mate_pairs.o src/split_mate_pairs.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o split_mate_pairs src/split_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o split_mate_pairs src/split_mate_pairs.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
sed -e 's|[@]JELLYFISH[@]|/usr/bin/jellyfish|g' -e 's|[@]bindir[@]|/build/quorum-1.1.1|g' -e 's|[@]JF_LIB_PATH[@]||g' -e 's|[@]PACKAGE_VERSION[@]|1.1.1|g' -e 's|[@]JELLYFISH_VERSION[@]|2.3.0|g' < src/quorum.in > quorum && chmod a+x quorum
mkdir -p data; /usr/bin/jellyfish count -m 24 -s 5k -C -t 10 -o data/adapter.jf data/adapter.fa
make[2]: Leaving directory '/build/quorum-1.1.1'
make[1]: Leaving directory '/build/quorum-1.1.1'
dh_auto_test -O--no-parallel
make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1
make[1]: Entering directory '/build/quorum-1.1.1'
make check-am
make[2]: Entering directory '/build/quorum-1.1.1'
make all_tests query_mer_database histo_mer_database libgtest.la libgtest_main.la
make[3]: Entering directory '/build/quorum-1.1.1'
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/all_tests-test_mer_database.o `test -f 'unit_tests/test_mer_database.cc' || echo './'`unit_tests/test_mer_database.cc
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -o unit_tests/gtest/src/libgtest_main_la-gtest_main.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo -lrt -lpthread
libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
libtool: link: ranlib .libs/libgtest.a
libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la -lrt -lpthread
libtool: link: (cd .libs/libgtest_main.lax/libgtest.a && ar x "/build/quorum-1.1.1/./.libs/libgtest.a")
libtool: link: ar cr .libs/libgtest_main.a unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o .libs/libgtest_main.lax/libgtest.a/libgtest_la-gtest-all.o
libtool: link: ranlib .libs/libgtest_main.a
libtool: link: rm -fr .libs/libgtest_main.lax
libtool: link: ( cd ".libs" && rm -f "libgtest_main.la" && ln -s "../libgtest_main.la" "libgtest_main.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o all_tests unit_tests/all_tests-test_mer_database.o libgtest_main.la -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o all_tests unit_tests/all_tests-test_mer_database.o ./.libs/libgtest_main.a /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/query_mer_database.o src/query_mer_database.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o query_mer_database src/query_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o query_mer_database src/query_mer_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/histo_mer_database.o src/histo_mer_database.cc
/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o histo_mer_database src/histo_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread
libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o histo_mer_database src/histo_mer_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread
make[3]: 'libgtest.la' is up to date.
make[3]: 'libgtest_main.la' is up to date.
make[3]: Leaving directory '/build/quorum-1.1.1'
make check-TESTS
make[3]: Entering directory '/build/quorum-1.1.1'
make[4]: Entering directory '/build/quorum-1.1.1'
PASS: all_tests
============================================================================
Testsuite summary for quorum 1.1.1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[4]: Leaving directory '/build/quorum-1.1.1'
make[3]: Leaving directory '/build/quorum-1.1.1'
make[2]: Leaving directory '/build/quorum-1.1.1'
make[1]: Leaving directory '/build/quorum-1.1.1'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--no-parallel
dh_prep -O--no-parallel
dh_auto_install --destdir=debian/quorum/ -O--no-parallel
make -j1 install DESTDIR=/build/quorum-1.1.1/debian/quorum AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/quorum-1.1.1'
make install-am
make[2]: Entering directory '/build/quorum-1.1.1'
make[3]: Entering directory '/build/quorum-1.1.1'
/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c quorum_error_correct_reads quorum_create_database merge_mate_pairs split_mate_pairs '/build/quorum-1.1.1/debian/quorum/usr/bin'
libtool: install: /usr/bin/install -c quorum_error_correct_reads /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_error_correct_reads
libtool: install: /usr/bin/install -c quorum_create_database /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_create_database
libtool: install: /usr/bin/install -c merge_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/merge_mate_pairs
libtool: install: /usr/bin/install -c split_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/split_mate_pairs
/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin'
/usr/bin/install -c .libs/quorum '/build/quorum-1.1.1/debian/quorum/usr/bin'
/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/share'
/usr/bin/install -c -m 644 data/adapter.jf '/build/quorum-1.1.1/debian/quorum/usr/share'
make[3]: Leaving directory '/build/quorum-1.1.1'
make[2]: Leaving directory '/build/quorum-1.1.1'
make[1]: Leaving directory '/build/quorum-1.1.1'
debian/rules override_dh_install
make[1]: Entering directory '/build/quorum-1.1.1'
dh_install
mkdir -p debian/quorum/usr/share/quorum
mv debian/quorum/usr/share/adapter* debian/quorum/usr/share/quorum
sed -i '1s+#! */usr/bin/env perl+#!/usr/bin/perl+' debian/*/usr/bin/*
make[1]: Leaving directory '/build/quorum-1.1.1'
dh_installdocs -O--no-parallel
dh_installchangelogs -O--no-parallel
dh_installman -O--no-parallel
dh_installsystemduser -O--no-parallel
dh_perl -O--no-parallel
dh_link -O--no-parallel
dh_strip_nondeterminism -O--no-parallel
dh_compress -O--no-parallel
dh_fixperms -O--no-parallel
dh_missing -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dh_shlibdeps -a -O--no-parallel
dh_installdeb -O--no-parallel
dh_gencontrol -O--no-parallel
dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -O--no-parallel
dh_builddeb -O--no-parallel
dpkg-deb: building package 'quorum-dbgsym' in '../quorum-dbgsym_1.1.1-7_amd64.deb'.
dpkg-deb: building package 'quorum' in '../quorum_1.1.1-7_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../quorum_1.1.1-7_amd64.buildinfo
dpkg-genchanges --build=binary -O../quorum_1.1.1-7_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1404723 and its subdirectories
I: Current time: Thu May 23 14:15:44 -12 2024
I: pbuilder-time-stamp: 1716516944
Fri Apr 21 19:52:44 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net.
Fri Apr 21 19:52:44 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net.
Fri Apr 21 19:56:28 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
Fri Apr 21 19:56:28 UTC 2023 I: quorum_1.1.1-7_amd64.changes:
Format: 1.8
Date: Mon, 25 Jul 2022 09:38:18 +0200
Source: quorum
Binary: quorum quorum-dbgsym
Architecture: amd64
Version: 1.1.1-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
quorum - QUality Optimized Reads of genomic sequences
Closes: 1013026
Changes:
quorum (1.1.1-7) unstable; urgency=medium
.
* Fix build with gcc-12
Closes: #1013026
* Standards-Version: 4.6.1 (routine-update)
Checksums-Sha1:
684511a42138c6e48550fc0f61c96cee30615abc 855788 quorum-dbgsym_1.1.1-7_amd64.deb
c184ec44949a5d2c9fe4e4514e41c0f5e80b5b9a 6310 quorum_1.1.1-7_amd64.buildinfo
a41811296f4511c8553b64e7850a7b59722f2e75 114456 quorum_1.1.1-7_amd64.deb
Checksums-Sha256:
c58d9d34a3de01c253722da4811dd7598b216406b84dd11156f48eb43c259de1 855788 quorum-dbgsym_1.1.1-7_amd64.deb
d322f64e0f5f76e179642cd4c6d1331d99c28abb5d9d6a8ce6cb91565423d4eb 6310 quorum_1.1.1-7_amd64.buildinfo
51920515a9ffafebca417760b2ac034ed3fa0766bd39f08591d5f4d43dd574c5 114456 quorum_1.1.1-7_amd64.deb
Files:
492ce3eecaf912b8a055fc9db25fe350 855788 debug optional quorum-dbgsym_1.1.1-7_amd64.deb
46d24034e4074dc449df2ec1f12ba553 6310 science optional quorum_1.1.1-7_amd64.buildinfo
d7de10389b09f4218159d9c9f0a23e48 114456 science optional quorum_1.1.1-7_amd64.deb
Fri Apr 21 19:56:29 UTC 2023 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/quorum_1.1.1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/quorum_1.1.1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/quorum_1.1.1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/b1/quorum_1.1.1-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.MsUmF7td/b2/quorum_1.1.1-7_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.328s)
0.328s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.024s)
0.024s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Fri Apr 21 19:56:30 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Fri Apr 21 19:56:30 UTC 2023 I: quorum from bookworm built successfully and reproducibly on amd64.
Fri Apr 21 19:56:32 UTC 2023 I: Submitting .buildinfo files to external archives:
Fri Apr 21 19:56:32 UTC 2023 I: Submitting 8.0K b1/quorum_1.1.1-7_amd64.buildinfo.asc
Fri Apr 21 19:56:34 UTC 2023 I: Submitting 8.0K b2/quorum_1.1.1-7_amd64.buildinfo.asc
Fri Apr 21 19:56:35 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Apr 21 19:56:35 UTC 2023 I: Done submitting .buildinfo files.
Fri Apr 21 19:56:35 UTC 2023 I: Removing signed quorum_1.1.1-7_amd64.buildinfo.asc files:
removed './b1/quorum_1.1.1-7_amd64.buildinfo.asc'
removed './b2/quorum_1.1.1-7_amd64.buildinfo.asc'