Fri Jan 26 13:27:04 UTC 2024 I: starting to build r-base/bookworm/amd64 on jenkins on '2024-01-26 13:26'
Fri Jan 26 13:27:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/12984/console.log
Fri Jan 26 13:27:04 UTC 2024 I: Downloading source for bookworm/r-base=4.2.2.20221110-2
--2024-01-26 13:27:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-base/r-base_4.2.2.20221110-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 3004 (2.9K) [text/prs.lines.tag]
Saving to: ‘r-base_4.2.2.20221110-2.dsc’
0K .. 100% 329M=0s
2024-01-26 13:27:04 (329 MB/s) - ‘r-base_4.2.2.20221110-2.dsc’ saved [3004/3004]
Fri Jan 26 13:27:04 UTC 2024 I: r-base_4.2.2.20221110-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-base
Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended
Architecture: any all
Version: 4.2.2.20221110-2
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Homepage: http://www.r-project.org/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/edd/r-base
Vcs-Git: https://salsa.debian.org/edd/r-base.git
Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386] | openjdk-10-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], mpack, bash-completion
Package-List:
r-base deb gnu-r optional arch=all
r-base-core deb gnu-r optional arch=any
r-base-dev deb gnu-r optional arch=all
r-base-html deb doc optional arch=all
r-doc-html deb doc optional arch=all
r-doc-info deb doc optional arch=all
r-doc-pdf deb doc optional arch=all
r-mathlib deb gnu-r optional arch=any
r-recommended deb gnu-r optional arch=all
Checksums-Sha1:
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f293fef043b38ae4379143f895fd8163dfb64dad 99016 r-base_4.2.2.20221110-2.debian.tar.xz
Checksums-Sha256:
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672212755d70e26ec1c8150a257721df67d95d201633830b7e45b3724a9e8030 99016 r-base_4.2.2.20221110-2.debian.tar.xz
Files:
8f47405a993ae19c069a9be37cd09724 33922762 r-base_4.2.2.20221110.orig.tar.gz
91d423d2f459b846c2372a6caadb77fd 99016 r-base_4.2.2.20221110-2.debian.tar.xz
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Fri Jan 26 13:27:04 UTC 2024 I: Checking whether the package is not for us
Fri Jan 26 13:27:04 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Fri Jan 26 13:27:04 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Fri Jan 26 14:19:22 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Jan 26 01:27:08 -12 2024
I: pbuilder-time-stamp: 1706275628
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-base_4.2.2.20221110-2.dsc]
I: copying [./r-base_4.2.2.20221110.orig.tar.gz]
I: copying [./r-base_4.2.2.20221110-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Jan 20 17:47:53 2023
gpgv: using RSA key A1489FE2AB99A21A
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-base_4.2.2.20221110-2.dsc: no acceptable signature found
dpkg-source: info: extracting r-base in r-base-4.2.2.20221110
dpkg-source: info: unpacking r-base_4.2.2.20221110.orig.tar.gz
dpkg-source: info: unpacking r-base_4.2.2.20221110-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/478551/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='72737c98d69f493d87c8a7f60814cc7c'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='478551'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/pbuilderrc_t3S0 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/b1 --logfile b1/build.log r-base_4.2.2.20221110-2.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 23 2023 more
-rwsr-xr-x 1 root root 59704 Mar 23 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 23 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 23 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/478551/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18148 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on gfortran (>= 4:4.9.2-2); however:
Package gfortran is not installed.
pbuilder-satisfydepends-dummy depends on libblas-dev; however:
Package libblas-dev is not installed.
pbuilder-satisfydepends-dummy depends on liblapack-dev; however:
Package liblapack-dev is not installed.
pbuilder-satisfydepends-dummy depends on tcl8.6-dev; however:
Package tcl8.6-dev is not installed.
pbuilder-satisfydepends-dummy depends on tk8.6-dev; however:
Package tk8.6-dev is not installed.
pbuilder-satisfydepends-dummy depends on bison; however:
Package bison is not installed.
pbuilder-satisfydepends-dummy depends on groff-base; however:
Package groff-base is not installed.
pbuilder-satisfydepends-dummy depends on libncurses5-dev; however:
Package libncurses5-dev is not installed.
pbuilder-satisfydepends-dummy depends on libreadline-dev; however:
Package libreadline-dev is not installed.
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on texinfo; however:
Package texinfo is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on liblzma-dev; however:
Package liblzma-dev is not installed.
pbuilder-satisfydepends-dummy depends on libpcre2-dev; however:
Package libpcre2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libpcre3-dev; however:
Package libpcre3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however:
Package libcurl4-openssl-dev is not installed.
Package libcurl4-dev is not installed.
pbuilder-satisfydepends-dummy depends on xdg-utils; however:
Package xdg-utils is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libpng-dev; however:
Package libpng-dev is not installed.
pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
Package libjpeg-dev is not installed.
pbuilder-satisfydepends-dummy depends on libx11-dev; however:
Package libx11-dev is not installed.
pbuilder-satisfydepends-dummy depends on libxt-dev; however:
Package libxt-dev is not installed.
pbuilder-satisfydepends-dummy depends on x11proto-core-dev; however:
Package x11proto-core-dev is not installed.
pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however:
Package libpango1.0-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcairo2-dev; however:
Package libcairo2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libtiff5-dev; however:
Package libtiff5-dev is not installed.
pbuilder-satisfydepends-dummy depends on xvfb; however:
Package xvfb is not installed.
pbuilder-satisfydepends-dummy depends on xauth; however:
Package xauth is not installed.
pbuilder-satisfydepends-dummy depends on xfonts-base; however:
Package xfonts-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-base; however:
Package texlive-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
Package texlive-plain-generic is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
Package texlive-fonts-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however:
Package texlive-fonts-extra is not installed.
pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however:
Package texlive-extra-utils is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
Package texlive-latex-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk | openjdk-10-jdk; however:
Package default-jdk is not installed.
Package openjdk-10-jdk is not installed.
pbuilder-satisfydepends-dummy depends on mpack; however:
Package mpack is not installed.
pbuilder-satisfydepends-dummy depends on bash-completion; however:
Package bash-completion is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bison{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} gir1.2-freedesktop{a} gir1.2-glib-2.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} intltool-debian{a} java-common{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl4{a} libcurl4-openssl-dev{a} libdatrie-dev{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-12-dev{a} libgfortran5{a} libgif7{a} libgirepository-1.0-1{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgraphite2-dev{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libkpathsea6{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm15{a} liblzma-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmime-charset-perl{a} libmount-dev{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsm-dev{a} libsm6{a} libsombok3{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libtext-unidecode-perl{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff5-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunicode-linebreak-perl{a} libunwind8{a} libwebp-dev{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbfile1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} libzzip-0-13{a} lmodern{a} m4{a} man-db{a} media-types{a} mpack{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pango1.0-tools{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texinfo{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tk8.6{a} tk8.6-dev{a} tzdata{a} ucf{a} uuid-dev{a} x11-common{a} x11-xkb-utils{a} x11proto-core-dev{a} x11proto-dev{a} xauth{a} xdg-utils{a} xfonts-base{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xserver-common{a} xtrans-dev{a} xvfb{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf bzip2-doc cm-super curl dbus dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript javascript-common libarchive-cpio-perl libatk-wrapper-java-jni libfile-homedir-perl libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libgpm2 libgtk2.0-bin libldap-common liblog-log4perl-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libwww-perl libx11-protocol-perl libxml-sax-expat-perl libyaml-tiny-perl lynx publicsuffix ruby tex-gyre texlive-fonts-extra-links tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 328 newly installed, 0 to remove and 0 not upgraded.
Need to get 1012 MB of archives. After unpacking 2913 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2023c-5+deb12u1 [296 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 bash-completion all 1:2.11-6 [234 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1+b1 [139 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 gtk-update-icon-cache amd64 3.24.38-2~deb12u1 [44.0 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 adwaita-icon-theme all 43-1 [5124 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 at-spi2-common all 2.46.0-5 [162 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 59 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 60 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 61 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 63 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 64 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B]
Get: 65 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB]
Get: 66 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB]
Get: 67 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB]
Get: 68 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB]
Get: 69 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB]
Get: 70 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB]
Get: 71 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 72 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB]
Get: 73 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 74 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB]
Get: 75 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB]
Get: 76 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB]
Get: 77 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB]
Get: 78 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB]
Get: 79 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB]
Get: 80 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB]
Get: 81 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB]
Get: 82 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB]
Get: 83 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.9+9-1~deb12u1 [43.7 MB]
Get: 84 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B]
Get: 85 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-common all 2.24.33-2 [2700 kB]
Get: 86 http://deb.debian.org/debian bookworm/main amd64 libatk1.0-0 amd64 2.46.0-5 [49.6 kB]
Get: 87 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB]
Get: 88 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB]
Get: 89 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB]
Get: 90 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get: 91 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB]
Get: 92 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB]
Get: 93 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB]
Get: 94 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB]
Get: 95 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB]
Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get: 97 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB]
Get: 98 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB]
Get: 99 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB]
Get: 100 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB]
Get: 101 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB]
Get: 102 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB]
Get: 103 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB]
Get: 104 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB]
Get: 105 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB]
Get: 106 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB]
Get: 107 http://deb.debian.org/debian bookworm/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB]
Get: 108 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB]
Get: 109 http://deb.debian.org/debian bookworm/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB]
Get: 110 http://deb.debian.org/debian bookworm/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB]
Get: 111 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB]
Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB]
Get: 113 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB]
Get: 114 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-0 amd64 2.24.33-2 [1855 kB]
Get: 115 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB]
Get: 116 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B]
Get: 117 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB]
Get: 118 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB]
Get: 119 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2+deb12u2 [192 kB]
Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB]
Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB]
Get: 122 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB]
Get: 123 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB]
Get: 124 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB]
Get: 125 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB]
Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB]
Get: 127 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B]
Get: 128 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB]
Get: 129 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB]
Get: 130 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB]
Get: 131 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB]
Get: 132 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB]
Get: 133 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB]
Get: 134 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB]
Get: 135 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB]
Get: 136 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB]
Get: 137 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB]
Get: 138 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB]
Get: 139 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB]
Get: 140 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB]
Get: 141 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB]
Get: 142 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB]
Get: 143 http://deb.debian.org/debian bookworm/main amd64 libgif7 amd64 5.2.1-2.5 [46.9 kB]
Get: 144 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB]
Get: 145 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB]
Get: 146 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre amd64 17.0.9+9-1~deb12u1 [184 kB]
Get: 147 http://deb.debian.org/debian bookworm/main amd64 default-jre amd64 2:1.17-74 [1056 B]
Get: 148 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jdk-headless amd64 17.0.9+9-1~deb12u1 [71.3 MB]
Get: 149 http://deb.debian.org/debian bookworm/main amd64 default-jdk-headless amd64 2:1.17-74 [1108 B]
Get: 150 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jdk amd64 17.0.9+9-1~deb12u1 [2777 kB]
Get: 151 http://deb.debian.org/debian bookworm/main amd64 default-jdk amd64 2:1.17-74 [1068 B]
Get: 152 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 153 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB]
Get: 154 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB]
Get: 155 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB]
Get: 156 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B]
Get: 157 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-3 [101 kB]
Get: 158 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-3 [159 kB]
Get: 159 http://deb.debian.org/debian bookworm/main amd64 gir1.2-freedesktop amd64 1.74.0-3 [37.2 kB]
Get: 160 http://deb.debian.org/debian bookworm/main amd64 gir1.2-harfbuzz-0.0 amd64 6.0.0+dfsg-3 [1579 kB]
Get: 161 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB]
Get: 162 http://deb.debian.org/debian bookworm/main amd64 libpangoxft-1.0-0 amd64 1.50.12+ds-1 [26.7 kB]
Get: 163 http://deb.debian.org/debian bookworm/main amd64 gir1.2-pango-1.0 amd64 1.50.12+ds-1 [37.4 kB]
Get: 164 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB]
Get: 165 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B]
Get: 166 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB]
Get: 167 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB]
Get: 168 http://deb.debian.org/debian bookworm/main amd64 uuid-dev amd64 2.38.1-5+b1 [39.9 kB]
Get: 169 http://deb.debian.org/debian bookworm/main amd64 libblkid-dev amd64 2.38.1-5+b1 [179 kB]
Get: 170 http://deb.debian.org/debian bookworm/main amd64 libbrotli-dev amd64 1.0.9-2+b6 [287 kB]
Get: 171 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB]
Get: 172 http://deb.debian.org/debian bookworm/main amd64 libcairo-gobject2 amd64 1.16.0-7 [112 kB]
Get: 173 http://deb.debian.org/debian bookworm/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcairo-script-interpreter2 amd64 1.16.0-7 [149 kB]
Get: 175 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB]
Get: 176 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB]
Get: 177 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB]
Get: 178 http://deb.debian.org/debian bookworm/main amd64 libfreetype-dev amd64 2.12.1+dfsg-5 [567 kB]
Get: 179 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB]
Get: 180 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB]
Get: 181 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB]
Get: 182 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB]
Get: 183 http://deb.debian.org/debian bookworm/main amd64 libfontconfig-dev amd64 2.14.1-4 [409 kB]
Get: 184 http://deb.debian.org/debian bookworm/main amd64 libffi-dev amd64 3.4.4-1 [59.4 kB]
Get: 185 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB]
Get: 186 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-bin amd64 2.74.6-2 [110 kB]
Get: 187 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB]
Get: 188 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB]
Get: 189 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev-bin amd64 2.74.6-2 [151 kB]
Get: 190 http://deb.debian.org/debian bookworm/main amd64 libsepol-dev amd64 3.4-2.1 [351 kB]
Get: 191 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB]
Get: 192 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB]
Get: 193 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB]
Get: 194 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB]
Get: 195 http://deb.debian.org/debian bookworm/main amd64 libselinux1-dev amd64 3.4-1+b6 [157 kB]
Get: 196 http://deb.debian.org/debian bookworm/main amd64 libmount-dev amd64 2.38.1-5+b1 [22.5 kB]
Get: 197 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev amd64 2.74.6-2 [1601 kB]
Get: 198 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-dev amd64 0.42.2-1 [564 kB]
Get: 199 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB]
Get: 200 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get: 201 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 202 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB]
Get: 203 http://deb.debian.org/debian bookworm/main amd64 x11proto-core-dev all 2022.1-1 [3528 B]
Get: 204 http://deb.debian.org/debian bookworm/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB]
Get: 205 http://deb.debian.org/debian bookworm/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB]
Get: 206 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB]
Get: 207 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB]
Get: 208 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 209 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B]
Get: 210 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB]
Get: 211 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2+deb12u2 [837 kB]
Get: 212 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0-dev amd64 1.15-1 [118 kB]
Get: 213 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0-dev amd64 1.15-1 [107 kB]
Get: 214 http://deb.debian.org/debian bookworm/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB]
Get: 215 http://deb.debian.org/debian bookworm/main amd64 libxrender-dev amd64 1:0.9.10-1.1 [41.1 kB]
Get: 216 http://deb.debian.org/debian bookworm/main amd64 libcairo2-dev amd64 1.16.0-7 [727 kB]
Get: 217 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
Get: 218 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB]
Get: 219 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 220 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 221 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 222 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB]
Get: 223 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 224 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 225 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 226 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u4 [390 kB]
Get: 227 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-10+deb12u4 [491 kB]
Get: 228 http://deb.debian.org/debian bookworm/main amd64 libdatrie-dev amd64 0.2.13-2+b1 [18.2 kB]
Get: 229 http://deb.debian.org/debian bookworm/main amd64 libdeflate-dev amd64 1.14-1 [53.3 kB]
Get: 230 http://deb.debian.org/debian bookworm/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB]
Get: 231 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1-dev amd64 2.14.1-4 [268 kB]
Get: 232 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB]
Get: 233 http://deb.debian.org/debian bookworm/main amd64 libfribidi-dev amd64 1.0.8-2.1 [105 kB]
Get: 234 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-dev amd64 1.3.14-1 [24.0 kB]
Get: 235 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-icu0 amd64 6.0.0+dfsg-3 [1557 kB]
Get: 236 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-gobject0 amd64 6.0.0+dfsg-3 [1572 kB]
Get: 237 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-subset0 amd64 6.0.0+dfsg-3 [1931 kB]
Get: 238 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB]
Get: 239 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-dev amd64 6.0.0+dfsg-3 [1668 kB]
Get: 240 http://deb.debian.org/debian bookworm/main amd64 libjbig-dev amd64 2.1-6.1 [31.0 kB]
Get: 241 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB]
Get: 242 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB]
Get: 243 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 244 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5.1+deb12u1 [152 kB]
Get: 245 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB]
Get: 246 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB]
Get: 247 http://deb.debian.org/debian bookworm/main amd64 liblerc-dev amd64 4.0.0+ds-2 [175 kB]
Get: 248 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB]
Get: 249 http://deb.debian.org/debian bookworm/main amd64 libmime-charset-perl all 1.013.1-2 [34.0 kB]
Get: 250 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB]
Get: 251 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-4 [349 kB]
Get: 252 http://deb.debian.org/debian bookworm/main amd64 libncurses5-dev amd64 6.4-4 [932 B]
Get: 253 http://deb.debian.org/debian bookworm/main amd64 libthai-dev amd64 0.1.29-1 [24.0 kB]
Get: 254 http://deb.debian.org/debian bookworm/main amd64 libxft-dev amd64 2.3.6-1 [80.3 kB]
Get: 255 http://deb.debian.org/debian bookworm/main amd64 pango1.0-tools amd64 1.50.12+ds-1 [40.8 kB]
Get: 256 http://deb.debian.org/debian bookworm/main amd64 libpango1.0-dev amd64 1.50.12+ds-1 [152 kB]
Get: 257 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB]
Get: 258 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B]
Get: 259 http://deb.debian.org/debian bookworm/main amd64 libpcre16-3 amd64 2:8.39-15 [257 kB]
Get: 260 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
Get: 261 http://deb.debian.org/debian bookworm/main amd64 libpcre32-3 amd64 2:8.39-15 [248 kB]
Get: 262 http://deb.debian.org/debian bookworm/main amd64 libpcrecpp0v5 amd64 2:8.39-15 [143 kB]
Get: 263 http://deb.debian.org/debian bookworm/main amd64 libpcre3-dev amd64 2:8.39-15 [653 kB]
Get: 264 http://deb.debian.org/debian bookworm/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get: 265 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5.1+deb12u1 [43.7 kB]
Get: 266 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB]
Get: 267 http://deb.debian.org/debian bookworm/main amd64 libsombok3 amd64 2.4.0-2+b1 [31.4 kB]
Get: 268 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5.1+deb12u1 [59.8 kB]
Get: 269 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB]
Get: 270 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB]
Get: 271 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5.1+deb12u1 [111 kB]
Get: 272 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5.1+deb12u1 [246 kB]
Get: 273 http://deb.debian.org/debian bookworm/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB]
Get: 274 http://deb.debian.org/debian bookworm/main amd64 libzstd-dev amd64 1.5.4+dfsg2-5 [354 kB]
Get: 275 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB]
Get: 276 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB]
Get: 277 http://deb.debian.org/debian bookworm/main amd64 libwebp-dev amd64 1.2.4-0.2+deb12u1 [400 kB]
Get: 278 http://deb.debian.org/debian bookworm/main amd64 libtiffxx6 amd64 4.5.0-6+deb12u1 [144 kB]
Get: 279 http://deb.debian.org/debian bookworm/main amd64 libtiff-dev amd64 4.5.0-6+deb12u1 [456 kB]
Get: 280 http://deb.debian.org/debian bookworm/main amd64 libtiff5-dev amd64 4.5.0-6+deb12u1 [141 kB]
Get: 281 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB]
Get: 282 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB]
Get: 283 http://deb.debian.org/debian bookworm/main amd64 libunicode-linebreak-perl amd64 0.0.20190101-1+b5 [97.8 kB]
Get: 284 http://deb.debian.org/debian bookworm/main amd64 libunwind8 amd64 1.6.2-3 [51.2 kB]
Get: 285 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB]
Get: 286 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB]
Get: 287 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB]
Get: 288 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB]
Get: 289 http://deb.debian.org/debian bookworm/main amd64 libxfont2 amd64 1:2.0.6-1 [136 kB]
Get: 290 http://deb.debian.org/debian bookworm/main amd64 libxkbfile1 amd64 1:1.1.0-1 [75.2 kB]
Get: 291 http://deb.debian.org/debian bookworm/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get: 292 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get: 293 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get: 294 http://deb.debian.org/debian bookworm/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get: 295 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB]
Get: 296 http://deb.debian.org/debian bookworm/main amd64 libxss-dev amd64 1:1.2.3-1 [23.5 kB]
Get: 297 http://deb.debian.org/debian bookworm/main amd64 libxt-dev amd64 1:1.2.1-1.1 [405 kB]
Get: 298 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB]
Get: 299 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB]
Get: 300 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 301 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB]
Get: 302 http://deb.debian.org/debian bookworm/main amd64 lmodern all 2.005-1 [9480 kB]
Get: 303 http://deb.debian.org/debian bookworm/main amd64 mpack amd64 1.6-18+b1 [39.7 kB]
Get: 304 http://deb.debian.org/debian bookworm/main amd64 preview-latex-style all 12.2-1 [201 kB]
Get: 305 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get: 306 http://deb.debian.org/debian bookworm/main amd64 tcl8.6 amd64 8.6.13+dfsg-2 [120 kB]
Get: 307 http://deb.debian.org/debian bookworm/main amd64 tcl8.6-dev amd64 8.6.13+dfsg-2 [1023 kB]
Get: 308 http://deb.debian.org/debian bookworm/main amd64 texinfo amd64 6.8-6+b1 [1816 kB]
Get: 309 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5.1+deb12u1 [10.5 MB]
Get: 310 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 311 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB]
Get: 312 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB]
Get: 313 http://deb.debian.org/debian bookworm/main amd64 texlive-luatex all 2022.20230122-3 [22.7 MB]
Get: 314 http://deb.debian.org/debian bookworm/main amd64 texlive-plain-generic all 2022.20230122-4 [28.9 MB]
Get: 315 http://deb.debian.org/debian bookworm/main amd64 texlive-extra-utils all 2022.20230122-4 [59.0 MB]
Get: 316 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-extra all 2022.20230122-4 [509 MB]
Get: 317 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB]
Get: 318 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-recommended all 2022.20230122-3 [8880 kB]
Get: 319 http://deb.debian.org/debian bookworm/main amd64 texlive-pictures all 2022.20230122-3 [15.8 MB]
Get: 320 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-extra all 2022.20230122-4 [19.2 MB]
Get: 321 http://deb.debian.org/debian bookworm/main amd64 tk8.6 amd64 8.6.13-2 [69.4 kB]
Get: 322 http://deb.debian.org/debian bookworm/main amd64 tk8.6-dev amd64 8.6.13-2 [781 kB]
Get: 323 http://deb.debian.org/debian bookworm/main amd64 x11-xkb-utils amd64 7.7+7 [165 kB]
Get: 324 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB]
Get: 325 http://deb.debian.org/debian bookworm/main amd64 xfonts-base all 1:1.0.5+nmu1 [5895 kB]
Get: 326 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB]
Get: 327 http://deb.debian.org/debian bookworm/main amd64 xserver-common all 2:21.1.7-3+deb12u2 [2382 kB]
Get: 328 http://deb.debian.org/debian bookworm/main amd64 xvfb amd64 2:21.1.7-3+deb12u2 [3151 kB]
Fetched 1012 MB in 19s (53.4 MB/s)
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Setting up media-types (10.0.0) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libgraphite2-3:amd64 (1.3.14-1) ...
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Setting up libicu72:amd64 (72.1-3) ...
Setting up liblerc4:amd64 (4.0.0+ds-2) ...
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Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libpcre16-3:amd64 (2:8.39-15) ...
Setting up hicolor-icon-theme (0.17-2) ...
Setting up java-common (0.74) ...
Setting up libdatrie1:amd64 (0.2.13-2+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up mpack (1.6-18+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:amd64 (2.74.6-2) ...
No schema files found: doing nothing.
Setting up libglvnd0:amd64 (1.6.0-1) ...
Setting up libtexluajit2:amd64 (2022.20220321.62855-5.1+deb12u1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:amd64 (1.0.9-2+b6) ...
Setting up libfontbox-java (1:1.8.16-2) ...
Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libsensors-config (1:3.6.0-7.1) ...
Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up libdeflate0:amd64 (1.14-1) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up xkb-data (2.35.1-1) ...
Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ...
Setting up file (1:5.44-3) ...
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Setting up libunwind8:amd64 (1.6.2-3) ...
Setting up libpthread-stubs0-dev:amd64 (0.4-1) ...
Setting up libjbig0:amd64 (2.1-6.1) ...
Setting up libpcre2-16-0:amd64 (10.42-1) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ...
Setting up tzdata (2023c-5+deb12u1) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Jan 26 13:31:35 UTC 2024.
Universal Time is now: Fri Jan 26 13:31:35 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libasound2-data (1.2.8-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up libpcre3:amd64 (2:8.39-15) ...
Setting up libgraphite2-dev:amd64 (1.3.14-1) ...
Setting up libfontenc1:amd64 (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:amd64 (4.8.12-3.1) ...
Setting up libpcre2-32-0:amd64 (10.42-1) ...
Setting up libblas3:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libglib2.0-data (2.74.6-2) ...
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Setting up libexpat1-dev:amd64 (2.5.0-1) ...
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Setting up libx11-data (2:1.8.4-2+deb12u2) ...
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Setting up libnspr4:amd64 (2:4.35-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libteckit0:amd64 (2.5.11+ds1-1+b1) ...
Setting up bash-completion (1:2.11-6) ...
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Setting up libncurses6:amd64 (6.4-4) ...
Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:amd64 (1.0.8-2.1) ...
Setting up t1utils (1.41-4) ...
Setting up libtexlua53-5:amd64 (2022.20220321.62855-5.1+deb12u1) ...
Setting up libpng16-16:amd64 (1.6.39-2) ...
Setting up libpcre32-3:amd64 (2:8.39-15) ...
Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-12) ...
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Setting up fonts-dejavu-core (2.37-6) ...
Setting up libsepol-dev:amd64 (3.4-2.1) ...
Setting up libpcsclite1:amd64 (1.9.9-2) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libsensors5:amd64 (1:3.6.0-7.1) ...
Setting up liblerc-dev:amd64 (4.0.0+ds-2) ...
Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ...
Setting up libkpathsea6:amd64 (2022.20220321.62855-5.1+deb12u1) ...
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Setting up libgfortran5:amd64 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ...
Setting up liblzma-dev:amd64 (5.4.1-0.2) ...
Setting up libgif7:amd64 (5.2.1-2.5) ...
Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
Setting up libpcre2-posix3:amd64 (10.42-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libxshmfence1:amd64 (1.3-1) ...
Setting up at-spi2-common (2.46.0-5) ...
Setting up libmime-charset-perl (1.013.1-2) ...
Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libasound2:amd64 (1.2.8-1+b1) ...
Setting up bison (2:3.8.2+dfsg-1+b1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
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Setting up libthai-data (0.1.29-1) ...
Setting up libgirepository-1.0-1:amd64 (1.74.0-3) ...
Setting up libssh2-1:amd64 (1.10.0-3+b1) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up libgtk2.0-common (2.24.33-2) ...
Setting up libatk1.0-0:amd64 (2.46.0-5) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libtext-unidecode-perl (1.30-3) ...
Setting up openssl (3.0.11-1~deb12u2) ...
Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ...
Setting up libbsd0:amd64 (0.11.7-2) ...
Setting up libtiffxx6:amd64 (4.5.0-6+deb12u1) ...
Setting up libdeflate-dev:amd64 (1.14-1) ...
Setting up libdrm-common (2.4.114-1) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libicu-dev:amd64 (72.1-3) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libbrotli-dev:amd64 (1.0.9-2+b6) ...
Setting up libblas-dev:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up libsynctex2:amd64 (2022.20220321.62855-5.1+deb12u1) ...
Setting up libbz2-dev:amd64 (1.0.8-5+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libpcrecpp0v5:amd64 (2:8.39-15) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libblkid-dev:amd64 (2.38.1-5+b1) ...
Setting up libice6:amd64 (2:1.0.10-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3) ...
Setting up tcl8.6 (8.6.13+dfsg-2) ...
Setting up liblapack3:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up libncurses-dev:amd64 (6.4-4) ...
Setting up libxcb1:amd64 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up libxcb-xfixes0:amd64 (1.15-1) ...
Setting up libpdfbox-java (1:1.8.16-2) ...
Setting up libxau-dev:amd64 (1:1.0.9-1) ...
Setting up libpcre2-dev:amd64 (10.42-1) ...
Setting up libice-dev:amd64 (2:1.0.10-1) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:amd64 (1.15-1) ...
Setting up libselinux1-dev:amd64 (3.4-1+b6) ...
Setting up libpcre3-dev:amd64 (2:8.39-15) ...
Setting up fontconfig-config (2.14.1-4) ...
Setting up libfribidi-dev:amd64 (1.0.8-2.1) ...
Setting up libxcb-glx0:amd64 (1.15-1) ...
Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ...
Setting up tcl8.6-dev:amd64 (8.6.13+dfsg-2) ...
Setting up libedit2:amd64 (3.1-20221030-2) ...
Setting up libreadline8:amd64 (8.2-1.3) ...
Setting up libpng-dev:amd64 (1.6.39-2) ...
Setting up libcommons-parent-java (56-1) ...
Setting up libavahi-common3:amd64 (0.8-10) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-2) ...
Setting up libjbig-dev:amd64 (2.1-6.1) ...
Setting up libcommons-logging-java (1.2-3) ...
Setting up libglib2.0-bin (2.74.6-2) ...
Setting up libnss3:amd64 (2:3.87.1-1) ...
Setting up libgfortran-12-dev:amd64 (12.2.0-14) ...
Setting up libxcb-shm0:amd64 (1.15-1) ...
Setting up libreadline-dev:amd64 (8.2-1.3) ...
Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Setting up pkgconf:amd64 (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libxcb-present0:amd64 (1.15-1) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ...
Setting up gfortran-12 (12.2.0-14) ...
Setting up libwebp-dev:amd64 (1.2.4-0.2+deb12u1) ...
Setting up libptexenc1:amd64 (2022.20220321.62855-5.1+deb12u1) ...
Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ...
Setting up libtiff-dev:amd64 (4.5.0-6+deb12u1) ...
Setting up libxcb-sync1:amd64 (1.15-1) ...
Setting up x11proto-core-dev (2022.1-1) ...
Setting up shared-mime-info (2.2-1) ...
Setting up liblapack-dev:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up pkg-config:amd64 (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up gir1.2-glib-2.0:amd64 (1.74.0-3) ...
Setting up libxcb-dri2-0:amd64 (1.15-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libdrm2:amd64 (2.4.114-1+b1) ...
Setting up dwz (0.15-1) ...
Setting up libdatrie-dev:amd64 (0.2.13-2+b1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libxcb-randr0:amd64 (1.15-1) ...
Setting up libllvm15:amd64 (1:15.0.6-4+b1) ...
Setting up libncurses5-dev:amd64 (6.4-4) ...
Setting up libcurl4:amd64 (7.88.1-10+deb12u4) ...
Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ...
Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ...
Setting up libfontconfig1:amd64 (2.14.1-4) ...
Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
Setting up ca-certificates-java (20230710~deb12u1) ...
No JRE found. Skipping Java certificates setup.
Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
Setting up libsm6:amd64 (2:1.2.3-1) ...
Setting up libxfont2:amd64 (1:2.0.6-1) ...
Setting up libavahi-client3:amd64 (0.8-10) ...
Setting up libmount-dev:amd64 (2.38.1-5+b1) ...
Setting up libxmuu1:amd64 (2:1.1.3-3) ...
Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ...
Setting up libxcb-dri3-0:amd64 (1.15-1) ...
Setting up libpaper1:amd64 (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ...
Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ...
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ...
Setting up gir1.2-freedesktop:amd64 (1.74.0-3) ...
Setting up libharfbuzz-icu0:amd64 (6.0.0+dfsg-3) ...
Setting up libxdamage1:amd64 (1:1.1.6-1) ...
Setting up libxcb1-dev:amd64 (1.15-1) ...
Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
Setting up libsombok3:amd64 (2.4.0-2+b1) ...
Setting up libsm-dev:amd64 (2:1.2.3-1) ...
Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ...
Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ...
Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ...
Setting up libx11-dev:amd64 (2:1.8.4-2+deb12u2) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libtiff5-dev:amd64 (4.5.0-6+deb12u1) ...
Setting up libharfbuzz-gobject0:amd64 (6.0.0+dfsg-3) ...
Setting up libpaper-utils (1.1.29) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gir1.2-harfbuzz-0.0:amd64 (6.0.0+dfsg-3) ...
Setting up gfortran (4:12.2.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.16.0-7) ...
Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
Setting up libfreetype-dev:amd64 (2.12.1+dfsg-5) ...
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:amd64 (1.15-1) ...
Setting up xfonts-base (1:1.0.5+nmu1) ...
Setting up adwaita-icon-theme (43-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libxfixes3:amd64 (1:6.0.0-2) ...
Setting up libcurl4-openssl-dev:amd64 (7.88.1-10+deb12u4) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1+b5) ...
Setting up libxinerama1:amd64 (2:1.1.4-3) ...
Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ...
Setting up libxcb-render0-dev:amd64 (1.15-1) ...
Setting up libxt6:amd64 (1:1.2.1-1.1) ...
Setting up libxext-dev:amd64 (2:1.3.4-1+b1) ...
Setting up libthai-dev:amd64 (0.1.29-1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcups2:amd64 (2.4.2-3+deb12u5) ...
Setting up xauth (1:1.1.2-1) ...
Setting up lmodern (2.005-1) ...
Setting up libharfbuzz-subset0:amd64 (6.0.0+dfsg-3) ...
Setting up libcairo-gobject2:amd64 (1.16.0-7) ...
Setting up libxss1:amd64 (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libxrender-dev:amd64 (1:0.9.10-1.1) ...
Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
Setting up libcairo-script-interpreter2:amd64 (1.16.0-7) ...
Setting up python3.11 (3.11.2-6) ...
Setting up libxft2:amd64 (2.3.6-1) ...
Setting up libxmu6:amd64 (2:1.1.3-3) ...
Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ...
Setting up libpangoxft-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libxi6:amd64 (2:1.8-1+b1) ...
Setting up libglx0:amd64 (1.6.0-1) ...
Setting up libfontconfig-dev:amd64 (2.14.1-4) ...
Setting up libxtst6:amd64 (2:1.2.3-1.1) ...
Setting up preview-latex-style (12.2-1) ...
Setting up libtk8.6:amd64 (8.6.13-2) ...
Setting up libxcursor1:amd64 (1:1.2.1-1) ...
Setting up pango1.0-tools (1.50.12+ds-1) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up libxaw7:amd64 (2:1.0.14-1) ...
Setting up libxss-dev:amd64 (1:1.2.3-1) ...
Setting up gir1.2-pango-1.0:amd64 (1.50.12+ds-1) ...
Setting up libgl1:amd64 (1.6.0-1) ...
Setting up libxt-dev:amd64 (1:1.2.1-1.1) ...
Setting up texinfo (6.8-6+b1) ...
Running mktexlsr. This may take some time. ... done.
Setting up openjdk-17-jre-headless:amd64 (17.0.9+9-1~deb12u1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up texlive-binaries (2022.20220321.62855-5.1+deb12u1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up python3-lib2to3 (3.11.2-3) ...
Setting up texlive-base (2022.20230122-3) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libxft-dev:amd64 (2.3.6-1) ...
Setting up python3-distutils (3.11.2-3) ...
Setting up tk8.6 (8.6.13-2) ...
Setting up libglib2.0-dev-bin (2.74.6-2) ...
Setting up libfontconfig1-dev:amd64 (2.14.1-4) ...
Setting up texlive-luatex (2022.20230122-3) ...
Setting up x11-xkb-utils (7.7+7) ...
Setting up libgtk2.0-0:amd64 (2.24.33-2) ...
Setting up texlive-plain-generic (2022.20230122-4) ...
Setting up libglib2.0-dev:amd64 (2.74.6-2) ...
Setting up texlive-latex-base (2022.20230122-3) ...
Setting up texlive-extra-utils (2022.20230122-4) ...
Setting up texlive-fonts-extra (2022.20230122-4) ...
Setting up texlive-latex-recommended (2022.20230122-3) ...
Setting up texlive-pictures (2022.20230122-3) ...
Setting up tk8.6-dev:amd64 (8.6.13-2) ...
Setting up texlive-fonts-recommended (2022.20230122-3) ...
Setting up libcairo2-dev:amd64 (1.16.0-7) ...
Setting up xserver-common (2:21.1.7-3+deb12u2) ...
Setting up libharfbuzz-dev:amd64 (6.0.0+dfsg-3) ...
Setting up xvfb (2:21.1.7-3+deb12u2) ...
Setting up texlive-latex-extra (2022.20230122-4) ...
Setting up libpango1.0-dev:amd64 (1.50.12+ds-1) ...
Processing triggers for libc-bin (2.36-9+deb12u3) ...
Processing triggers for ca-certificates-java (20230710~deb12u1) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem
Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up openjdk-17-jdk-headless:amd64 (17.0.9+9-1~deb12u1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre-headless (2:1.17-74) ...
Setting up openjdk-17-jre:amd64 (17.0.9+9-1~deb12u1) ...
Setting up default-jre (2:1.17-74) ...
Setting up openjdk-17-jdk:amd64 (17.0.9+9-1~deb12u1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk-headless (2:1.17-74) ...
Setting up default-jdk (2:1.17-74) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Processing triggers for ca-certificates-java (20230710~deb12u1) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.31-1.2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/r-base-4.2.2.20221110/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-base_4.2.2.20221110-2_source.changes
dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 4.2.2.20221110-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <edd@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f configure-stamp \
build-stamp build-indep-stamp build-arch-stamp \
make-stamp make-arch-stamp make-indep-stamp \
install-indep-stamp install-arch-stamp \
check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
debian/rules build
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash \
mkdir_p="/bin/mkdir -p" \
MKDIR_P="/bin/mkdir -p" \
R_TEXI2DVICMD=emulation \
R_PAPERSIZE=letter \
R_BROWSER=xdg-open \
R_BZIPCMD=/bin/bzip2 \
R_GZIPCMD="/bin/gzip -n" \
PAGER=/usr/bin/pager \
PERL=/usr/bin/perl \
JAVA_HOME=/usr/lib/jvm/default-java \
R_UNZIPCMD=/usr/bin/unzip \
R_ZIPCMD=/usr/bin/zip \
R_PRINTCMD=/usr/bin/lpr \
TAR=/bin/tar \
LIBnn=lib \
AWK=/usr/bin/awk \
DD=/bin/dd \
GREP=/bin/grep \
FGREP="/bin/grep -F" \
EGREP="/bin/grep -E" \
SED=/bin/sed \
GETWD="/bin/pwd" \
CC=gcc \
CXX=g++ \
F77=gfortran \
FC=gfortran \
CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \
FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong" \
FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong" \
CPPFLAGS= \
LDFLAGS="-Wl,-z,relro" \
FLIBS= \
rsharedir=/usr/share/R/share \
rincludedir=/usr/share/R/include \
rdocdir=/usr/share/R/doc \
./configure --prefix=/usr \
--with-cairo \
--with-jpeglib \
--with-readline \
--with-tcltk \
--mandir=/usr/share/man \
--infodir=/usr/share/info \
--datadir=/usr/share/R/share \
--includedir=/usr/share/R/include \
--with-blas \
--with-lapack \
--enable-long-double \
--enable-R-profiling \
--enable-R-shlib \
--enable-memory-profiling \
--without-recommended-packages \
--build x86_64-linux-gnu
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc needs -traditional... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether g++ can compile ObjC++... no
checking whether can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking for C stack direction... down
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc... -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking if need -fno-optimize-sibling-calls for gfortran... yes
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++ supports C++11 features with -std=gnu++11... yes
checking whether g++ supports C++14 features with -std=gnu++14... yes
checking whether g++ supports C++17 features with -std=gnu++17... yes
checking whether g++ supports C++20 features with -std=gnu++20... yes
checking for g++ -std=gnu++14 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... -ltirpc
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly after 2037...
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
configure: searching for an external BLAS
configure: searching for BLAS in default libraries
checking for dgemm_... no
configure: searching for OpenBLAS
checking for sgemm_ in -lopenblas... no
configure: searching for BLIS
checking for sgemm_ in -lblis... no
configure: searching for ATLAS
checking for ATL_xerbla in -latlas... no
configure: searching for PhiPACK
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configure: searching for IBM ESSL
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
configure: searching for generic BLAS library
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration...
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
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checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
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checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... yes
checking for tirpc/rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.88.1
checking for curl/curl.h... yes
checking if libcurl is version 7 and >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes
Configuring src/extra/intl directory
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached)
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.8.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
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config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
R is now configured for x86_64-pc-linux-gnu
Source directory: .
Installation directory: /usr
C compiler: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong
Default C++ compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
C++11 compiler: g++ -std=gnu++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
C++14 compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
C++17 compiler: g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
C++20 compiler: g++ -std=gnu++20 -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong
Obj-C compiler:
Interfaces supported: X11, tcltk
External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl
Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU
Options enabled: shared R library, R profiling, memory profiling
Capabilities skipped:
Options not enabled: shared BLAS
Recommended packages: no
touch configure-stamp
*** make-arch ***
/usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2" \
FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong" \
FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong" \
CC=gcc \
CXX=g++ \
F77=gfortran \
LDFLAGS="-Wl,-z,relro" \
PKG_BUILT_STAMP="""" \
R_GZIPCMD="/bin/gzip -n" \
R
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dposl.f -o dposl.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o
ranlib libappl.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
#@/usr/bin/make install-Linpack
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.2.2.20221110"' \
-o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/bin/exec
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/lib
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o -lR
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c libcurl.c -o libcurl.o
libcurl.c: In function 'in_do_curlDownload':
libcurl.c:637:13: warning: 'CURLOPT_PROGRESSFUNCTION' is deprecated: since 7.32.0. Use CURLOPT_XFERINFOFUNCTION [-Wdeprecated-declarations]
637 | curl_easy_setopt(hnd[i], CURLOPT_PROGRESSFUNCTION, progress);
| ^~~~~~~~~~~~~~~~
In file included from libcurl.c:38:
/usr/include/x86_64-linux-gnu/curl/curl.h:1295:3: note: declared here
1295 | CURLOPTDEPRECATED(CURLOPT_PROGRESSFUNCTION, CURLOPTTYPE_FUNCTIONPOINT, 56,
| ^~~~~~~~~~~~~~~~~
libcurl.c:693:9: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations]
693 | curl_easy_getinfo(hnd[0], CURLINFO_SIZE_DOWNLOAD, &dl);
| ^~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/curl/curl.h:2841:3: note: declared here
2841 | CURLINFO_SIZE_DOWNLOAD
| ^~~~~~~~~~~~~~~~~~~~~~
libcurl.c:702:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations]
702 | curl_easy_getinfo(hnd[0], CURLINFO_CONTENT_LENGTH_DOWNLOAD, &cl);
| ^~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/curl/curl.h:2858:3: note: declared here
2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libcurl.c:714:13: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations]
714 | curl_easy_getinfo(hnd[i], CURLINFO_SIZE_DOWNLOAD, &dl);
| ^~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/curl/curl.h:2841:3: note: declared here
2841 | CURLINFO_SIZE_DOWNLOAD
| ^~~~~~~~~~~~~~~~~~~~~~
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/modules
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm
gcc -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o
gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o
gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm
make[10]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o
gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c loessf.f -o loessf.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c ppr.f -o ppr.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c sgram.f -o sgram.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c hclust.f -o hclust.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c kmns.f -o kmns.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c eureka.f -o eureka.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -msse2 -mfpmath=sse -c portsrc.f -o portsrc.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -L/usr/lib/x86_64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o
gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
(cd src/nmath/standalone; \
/usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \
FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -D_REENTRANT" \
CC=gcc \
CXX=g++ \
F77=gfortran \
R_GZIPCMD="/bin/gzip -n" \
libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
shared static )
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
Copying source files
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
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R_GZIPCMD="/bin/gzip -n" \
/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
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#@/usr/bin/make install-Linpack
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gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.2.2.20221110"' \
-o Rscript ./Rscript.c
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building system startup profile
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building package 'translations'
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building package 'base'
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all.R is unchanged
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building package 'tools'
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all.R is unchanged
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installing 'sysdata.rda'
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building package 'compiler'
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all.R is unchanged
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building package 'utils'
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all.R is unchanged
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installing 'sysdata.rda'
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building package 'grDevices'
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all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
you should 'make docs' now ...
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
installing parsed Rd
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
base
stats
utils
methods
graphics
grDevices
datasets
grid
tools
tcltk
splines
stats4
compiler
parallel
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
writing package indices
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
/usr/bin/make javaconf
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
#@/usr/bin/make install-Linpack
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.2.2.20221110"' \
-o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
/build/reproducible-path/r-base-4.2.2.20221110/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
/build/reproducible-path/r-base-4.2.2.20221110/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version : 17.0.9
Java home path : /usr/lib/jvm/default-java
Java compiler : /usr/lib/jvm/default-java/bin/javac
Java headers gen.:
Java archive tool: /usr/lib/jvm/default-java/bin/jar
trying to compile and link a JNI program
detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.FqhcVm'
gcc -I"/build/reproducible-path/r-base-4.2.2.20221110/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o
gcc -shared -L/build/reproducible-path/r-base-4.2.2.20221110/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.2.2.20221110/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.FqhcVm'
JAVA_HOME : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /build/reproducible-path/r-base-4.2.2.20221110
Done.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
touch make-arch-stamp
*** make-indep ***
/usr/bin/make -k docs
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
#@/usr/bin/make install-Linpack
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.2.2.20221110"' \
-o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
/build/reproducible-path/r-base-4.2.2.20221110/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
/build/reproducible-path/r-base-4.2.2.20221110/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
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base
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
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[10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13] [14] [15] [16] [17] [18] [19] [20] [21] [22]
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25]
Underfull \hbox (badness 10000) in paragraph at lines 1586--1592
[26] [27] [28] [29] [30] [31] [32]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2064--2064
[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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Underfull \hbox (badness 1721) in paragraph at lines 2721--2725
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 3902--3904
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
Underfull \hbox (badness 2521) in paragraph at lines 5197--5199
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[97] [98] [99] [100]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6388--6388
[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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Underfull \hbox (badness 1303) in paragraph at lines 7281--7288
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
Underfull \hbox (badness 2111) in paragraph at lines 7292--7297
[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
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Underfull \vbox (badness 3803) has occurred while \output is active [115]
Underfull \vbox (badness 10000) has occurred while \output is active [116]
[117] [118] [119] [120] [121] [122] [123]
Underfull \hbox (badness 2096) in paragraph at lines 7962--7966
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[124] [125]
Underfull \hbox (badness 2351) in paragraph at lines 8076--8079
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4479) in paragraph at lines 8393--8404
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[131] [132] [133] [134] [135] [136] [137]
Underfull \hbox (badness 1629) in paragraph at lines 8861--8873
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
Underfull \hbox (badness 2875) in paragraph at lines 8861--8873
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]
Underfull \hbox (badness 1178) in paragraph at lines 9629--9633
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184]
Underfull \hbox (badness 2744) in paragraph at lines 11938--11940
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209] [210] [211] [212] [213] [214] [215] [216]
Underfull \hbox (badness 2253) in paragraph at lines 14134--14136
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
[217]
Underfull \hbox (badness 1490) in paragraph at lines 14169--14172
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[218]
Underfull \hbox (badness 1565) in paragraph at lines 14251--14255
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[219]
Underfull \hbox (badness 4927) in paragraph at lines 14302--14304
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
[220]
Underfull \hbox (badness 3148) in paragraph at lines 14404--14409
[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
[221]
Underfull \hbox (badness 1466) in paragraph at lines 14451--14454
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[222] [223]
Underfull \hbox (badness 10000) in paragraph at lines 14582--14586
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14593--14596
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[224] [225] [226] [227] [228]
Underfull \hbox (badness 3965) in paragraph at lines 14890--14894
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 4429) in paragraph at lines 15679--15682
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[241] [242]
Underfull \hbox (badness 10000) in paragraph at lines 15785--15787
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[243]
Underfull \hbox (badness 2035) in paragraph at lines 15858--15862
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
[244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246] [247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 2452) in paragraph at lines 16471--16475
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16471--16475
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[254] [255]
Underfull \hbox (badness 1092) in paragraph at lines 16644--16649
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[256] [257] [258] [259]
Underfull \hbox (badness 6741) in paragraph at lines 16897--16901
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[260] [261] [262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \vbox (badness 10000) has occurred while \output is active [271]
[272] [273] [274] [275] [276] [277] [278] [279] [280] [281]
Underfull \hbox (badness 1478) in paragraph at lines 18349--18352
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[282] [283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18621--18623
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
Underfull \hbox (badness 2088) in paragraph at lines 18627--18636
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[286] [287] [288] [289] [290] [291] [292] [293] [294] [295]
Underfull \hbox (badness 1442) in paragraph at lines 19235--19237
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[296] [297] [298] [299] [300]
Underfull \hbox (badness 10000) in paragraph at lines 19566--19572
[301] [302] [303] [304]
Underfull \hbox (badness 1248) in paragraph at lines 19811--19814
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[305] [306] [307] [308]
Underfull \hbox (badness 4739) in paragraph at lines 20074--20076
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
[321] [322] [323] [324] [325]
Underfull \hbox (badness 2469) in paragraph at lines 21158--21163
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[326] [327]
Underfull \hbox (badness 1675) in paragraph at lines 21246--21255
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3189) in paragraph at lines 21256--21271
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
Underfull \hbox (badness 10000) in paragraph at lines 21306--21309
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
Underfull \hbox (badness 4752) in paragraph at lines 21306--21309
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
[328] [329]
Underfull \hbox (badness 1014) in paragraph at lines 21440--21445
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
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Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
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[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445]
[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
[450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476]
Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
Underfull \hbox (badness 1163) in paragraph at lines 31344--31355
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
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[509] [510] [511] [512] [513] [514] [515]
Underfull \hbox (badness 1655) in paragraph at lines 33626--33628
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
[535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546]
[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563]
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 10000) in paragraph at lines 37483--37485
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[576]
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[578] [579] [580] [581] [582]
Underfull \hbox (badness 2913) in paragraph at lines 37903--37907
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
Underfull \hbox (badness 1072) in paragraph at lines 38149--38153
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 38154--38158
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 38209--38216
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[587] [588] [589]
Underfull \hbox (badness 2644) in paragraph at lines 38444--38448
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
Underfull \hbox (badness 1142) in paragraph at lines 38597--38603
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 1158) in paragraph at lines 39914--39916
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 1137) in paragraph at lines 40505--40511
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
Underfull \hbox (badness 4967) in paragraph at lines 40524--40529
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
Underfull \hbox (badness 1616) in paragraph at lines 40644--40649
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 1472) in paragraph at lines 41191--41194
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
[634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645]
[646] [647] [648]
Underfull \hbox (badness 10000) in paragraph at lines 42117--42121
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
Underfull \hbox (badness 10000) in paragraph at lines 42368--42371
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
Underfull \hbox (badness 10000) in paragraph at lines 42552--42556
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
Underfull \hbox (badness 10000) in paragraph at lines 43191--43194
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[665] [666] [667] [668] [669] [670]
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[672] [673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 1990) in paragraph at lines 44113--44121
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 44113--44121
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690]
[691] [692] [693]
Underfull \hbox (badness 2452) in paragraph at lines 45082--45088
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
Underfull \hbox (badness 3668) in paragraph at lines 45480--45482
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[700] [701]
Underfull \hbox (badness 2401) in paragraph at lines 45610--45614
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
Underfull \hbox (badness 2111) in paragraph at lines 45818--45823
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
Underfull \hbox (badness 4001) in paragraph at lines 46064--46066
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
Underfull \hbox (badness 5417) in paragraph at lines 46429--46433
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
[820] [821] [822] [823]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[824] [825]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[831] [832] [833] [834] [835] [836] [837]
Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[919]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
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[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
ures//mai.pdf>]
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ures//oma.pdf>] [1017] [1018]
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l.5943 \aliasA{plot}{plot.default}{plot}
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[][]
[1040 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
ures//pch.pdf>] [1041]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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l.9018 \HeaderA{units}{Graphical Units}{units}
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1175] [1176]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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[1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208])
(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1261]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
[1262]
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
[1311] [1312] [1313]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1356] [1357] [1358] [1359]) (./parallel-pkg.tex [1360]
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
[1383] [1384] [1385]) (./splines-pkg.tex [1386]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1458]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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Underfull \hbox (badness 2556) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7493--7496
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1549] [1550]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 2142) in paragraph at lines 11005--11008
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
[1577]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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l.11963 \aliasA{hat}{influence.measures}{hat}
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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Underfull \hbox (badness 1496) in paragraph at lines 13457--13463
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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Underfull \hbox (badness 4518) in paragraph at lines 13855--13860
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 16253--16259
[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
Underfull \hbox (badness 1867) in paragraph at lines 16253--16259
[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
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Underfull \hbox (badness 1158) in paragraph at lines 17906--17909
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
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Underfull \hbox (badness 1377) in paragraph at lines 18933--18938
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
Underfull \hbox (badness 1735) in paragraph at lines 18938--18941
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 2343) in paragraph at lines 18951--18955
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 3471) in paragraph at lines 18951--18955
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18959--18963
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
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[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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[1778]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1779] [1780] [1781] [1782] [1783] [1784] [1785]
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\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
Underfull \hbox (badness 10000) in paragraph at lines 23855--23856
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24827--24833
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1804]
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
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[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
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[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
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[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
[1910] [1911] [1912]
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[1914] [1915]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
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[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
[1928] [1929] [1930]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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[1942] [1943] [1944]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again>
\relax
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
[1949] [1950] [1951] [1952] [1953] [1954] [1955]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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(Font) using `T1/zi4/m/n' instead on input line 72.
[1972]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1973] [1974]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[1989]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1996] [1997]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
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<to be read again>
\relax
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
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\relax
l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
[2002] [2003] [2004]
[2005] [2006]
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[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
[2007] [2008] [2009]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
[2010] [2011] [2012] [2013] [2014] [2015] [2016]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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(Font) using `T1/zi4/m/it' instead on input line 2894.
[2017] [2018] [2019] [2020] [2021]
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[2033]
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[2034] [2035]
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2036] [2037] [2038] [2039] [2040] [2041]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
Underfull \hbox (badness 1946) in paragraph at lines 4449--4453
[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
[2042]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
[2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2048] [2049] [2050] [2051]) (./utils-pkg.tex [2052]
Chapter 14.
[2053]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2064] [2065] [2066]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
[2067] [2068] [2069]
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[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
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\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2078]
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2089] [2090] [2091] [2092] [2093] [2094]
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l.2711 ... the Clipboard in MS Windows}{clipboard}
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
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\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2117] [2118]
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2130]
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l.5054 ...mat Unordered and Ordered Lists}{format}
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l.5054 ...mat Unordered and Ordered Lists}{format}
[2131] [2132] [2133]
[2134] [2135] [2136] [2137] [2138] [2139]
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
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x,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
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[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
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[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
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[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
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[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
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[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
= Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able
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[]\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[]
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10
is now taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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d spe-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not
have
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,
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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n
/10 which used
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup
. org /
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\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to
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[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
in-stall. See
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[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[2301] [2302] [2303] [2304])
No file refman.ind.
(./refman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.
)
(see the transcript file for additional information)
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xist, replaced by a fixed one
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
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1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
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tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
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4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
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[]\T1/ptm/m/n/10 , and
[219]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
[220]
Underfull \hbox (badness 3148) in paragraph at lines 14404--14409
[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
[221]
Underfull \hbox (badness 1466) in paragraph at lines 14451--14454
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[222] [223]
Underfull \hbox (badness 10000) in paragraph at lines 14582--14586
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14593--14596
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[224] [225] [226] [227] [228]
Underfull \hbox (badness 3965) in paragraph at lines 14890--14894
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 4429) in paragraph at lines 15679--15682
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[241] [242]
Underfull \hbox (badness 10000) in paragraph at lines 15785--15787
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[243]
Underfull \hbox (badness 2035) in paragraph at lines 15858--15862
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
[244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246] [247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 2452) in paragraph at lines 16471--16475
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16471--16475
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[254] [255]
Underfull \hbox (badness 1092) in paragraph at lines 16644--16649
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[256] [257] [258] [259]
Underfull \hbox (badness 6741) in paragraph at lines 16897--16901
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[260] [261] [262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \vbox (badness 10000) has occurred while \output is active [271]
[272] [273] [274] [275] [276] [277] [278] [279] [280] [281]
Underfull \hbox (badness 1478) in paragraph at lines 18349--18352
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[282] [283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18621--18623
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
Underfull \hbox (badness 2088) in paragraph at lines 18627--18636
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[286] [287] [288] [289] [290] [291] [292] [293] [294] [295]
Underfull \hbox (badness 1442) in paragraph at lines 19235--19237
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[296] [297] [298] [299] [300]
Underfull \hbox (badness 10000) in paragraph at lines 19566--19572
[301] [302] [303] [304]
Underfull \hbox (badness 1248) in paragraph at lines 19811--19814
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[305] [306] [307] [308]
Underfull \hbox (badness 4739) in paragraph at lines 20074--20076
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
[321] [322] [323] [324] [325]
Underfull \hbox (badness 2469) in paragraph at lines 21158--21163
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[326] [327]
Underfull \hbox (badness 1675) in paragraph at lines 21246--21255
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3189) in paragraph at lines 21256--21271
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
Underfull \hbox (badness 10000) in paragraph at lines 21306--21309
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
Underfull \hbox (badness 4752) in paragraph at lines 21306--21309
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
[328] [329]
Underfull \hbox (badness 1014) in paragraph at lines 21440--21445
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
Underfull \vbox (badness 3803) has occurred while \output is active [430]
Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
Underfull \hbox (badness 1253) in paragraph at lines 28390--28394
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445]
[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
[450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476]
Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
Underfull \hbox (badness 1163) in paragraph at lines 31344--31355
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
Underfull \vbox (badness 10000) has occurred while \output is active [508]
[509] [510] [511] [512] [513] [514] [515]
Underfull \hbox (badness 1655) in paragraph at lines 33626--33628
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
[535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546]
[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
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[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
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\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
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[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
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[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
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\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
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\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
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[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
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[646] [647] [648]
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
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[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
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[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
Underfull \hbox (badness 10000) in paragraph at lines 43191--43194
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[665] [666] [667] [668] [669] [670]
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[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 44113--44121
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690]
[691] [692] [693]
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[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[700] [701]
Underfull \hbox (badness 2401) in paragraph at lines 45610--45614
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
Underfull \hbox (badness 4001) in paragraph at lines 46064--46066
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
Underfull \hbox (badness 5417) in paragraph at lines 46429--46433
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
[820] [821] [822] [823]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[824] [825]
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[831] [832] [833] [834] [835] [836] [837]
Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
[838]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
[839] [840] [841]
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
[842] [843] [844] [845] [846] [847] [848] [849] [850] [851]
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
[869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880]
[881] [882]
Underfull \hbox (badness 1584) in paragraph at lines 4910--4912
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4914--4921
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
[883] [884] [885] [886]
Underfull \hbox (badness 1377) in paragraph at lines 5220--5225
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
[887]
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[888]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
[889]
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[891]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
Underfull \hbox (badness 10000) in paragraph at lines 5700--5702
[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[895] [896]
Underfull \hbox (badness 1546) in paragraph at lines 5844--5852
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
[897] [898] [899] [900] [901] [902] [903] [904]
Underfull \hbox (badness 10000) in paragraph at lines 6382--6385
[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[905] [906]
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[908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[919]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[920] [921] [922] [923] [924]
Underfull \hbox (badness 3780) in paragraph at lines 7630--7636
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
[931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942]
[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
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[][]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
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Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
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Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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Underfull \hbox (badness 2626) in paragraph at lines 9185--9188
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1549] [1550]
Underfull \hbox (badness 2503) in paragraph at lines 9292--9296
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1572] [1573] [1574] [1575] [1576]
Underfull \hbox (badness 2142) in paragraph at lines 11005--11008
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 11024--11027
[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
[1577]
Underfull \hbox (badness 1708) in paragraph at lines 11086--11090
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1578] [1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 1694) in paragraph at lines 11482--11485
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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been already used, duplicate ignored
<to be read again>
\relax
l.11963 \aliasA{hat}{influence.measures}{hat}
[1592] [1593]
Underfull \hbox (badness 1484) in paragraph at lines 12105--12107
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603]
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
[1604] [1605] [1606] [1607] [1608] [1609]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1610] [1611] [1612] [1613] [1614] [1615]
Underfull \hbox (badness 1496) in paragraph at lines 13457--13463
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1616] [1617] [1618] [1619] [1620] [1621] [1622]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1633] [1634]
Underfull \hbox (badness 6412) in paragraph at lines 14660--14664
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
[1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661]
Underfull \hbox (badness 10000) in paragraph at lines 16253--16259
[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
Underfull \hbox (badness 1867) in paragraph at lines 16253--16259
[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
[1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672]
[1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683]
[1684] [1685] [1686] [1687]
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1688] [1689]
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[1704] [1705]
Underfull \hbox (badness 1377) in paragraph at lines 18933--18938
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 3471) in paragraph at lines 18951--18955
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18959--18963
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1706] [1707] [1708]
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
Overfull \hbox (3.75941pt too wide) in paragraph at lines 19187--19187
[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
[1710] [1711] [1712] [1713] [1714] [1715] [1716]
Underfull \hbox (badness 1337) in paragraph at lines 19646--19649
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725]
Underfull \hbox (badness 10000) in paragraph at lines 20117--20123
\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
[1726] [1727] [1728] [1729] [1730]
Underfull \hbox (badness 1194) in paragraph at lines 20447--20450
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
[1731] [1732] [1733] [1734] [1735] [1736]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
Underfull \hbox (badness 3919) in paragraph at lines 20853--20855
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
[1749] [1750] [1751] [1752] [1753] [1754] [1755]
Underfull \hbox (badness 10000) in paragraph at lines 21932--21938
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766]
[1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777]
[1778]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1779] [1780] [1781] [1782] [1783] [1784] [1785]
Underfull \hbox (badness 1436) in paragraph at lines 23714--23717
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
Underfull \hbox (badness 10000) in paragraph at lines 23855--23856
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797]
[1798] [1799] [1800] [1801] [1802]
Underfull \hbox (badness 1824) in paragraph at lines 24827--24833
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24827--24833
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
Underfull \hbox (badness 10000) in paragraph at lines 24848--24851
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1804]
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Underfull \hbox (badness 2165) in paragraph at lines 25429--25434
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
Underfull \hbox (badness 1867) in paragraph at lines 25638--25640
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25653--25657
[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827]
[1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838]
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27535--27535
[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
Overfull \hbox (20.23795pt too wide) in paragraph at lines 27628--27628
[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
Underfull \hbox (badness 3514) in paragraph at lines 27804--27809
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
Underfull \hbox (badness 3514) in paragraph at lines 27891--27896
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
Underfull \hbox (badness 4024) in paragraph at lines 28633--28636
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876]
Underfull \hbox (badness 5431) in paragraph at lines 29239--29241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
Underfull \hbox (badness 5431) in paragraph at lines 29449--29452
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
Underfull \hbox (badness 1616) in paragraph at lines 30082--30085
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
[1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901]
[1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
Underfull \hbox (badness 3557) in paragraph at lines 31217--31221
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
[1910] [1911] [1912]
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Underfull \hbox (badness 1337) in paragraph at lines 31581--31585
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
Underfull \hbox (badness 1337) in paragraph at lines 32110--32114
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
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[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
[1928] [1929] [1930]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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[1942] [1943] [1944]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again>
\relax
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
[1949] [1950] [1951] [1952] [1953] [1954] [1955]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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(Font) using `T1/zi4/m/n' instead on input line 72.
[1972]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1973] [1974]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[1989]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1996] [1997]
Underfull \hbox (badness 4096) in paragraph at lines 1714--1722
\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
Underfull \hbox (badness 1082) in paragraph at lines 1724--1726
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
been already used, duplicate ignored
<to be read again>
\relax
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
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\relax
l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
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Overfull \hbox (8.25941pt too wide) in paragraph at lines 2230--2230
[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
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Underfull \hbox (badness 4096) in paragraph at lines 2399--2407
\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
[2010] [2011] [2012] [2013] [2014] [2015] [2016]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 2893.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 2894.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 2894.
[2017] [2018] [2019] [2020] [2021]
Underfull \hbox (badness 1424) in paragraph at lines 3196--3198
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[2033]
Underfull \hbox (badness 10000) in paragraph at lines 3902--3904
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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Underfull \hbox (badness 10000) in paragraph at lines 4041--4044
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2036] [2037] [2038] [2039] [2040] [2041]
Underfull \hbox (badness 1796) in paragraph at lines 4399--4404
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
Underfull \hbox (badness 1946) in paragraph at lines 4449--4453
[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
[2042]
Underfull \hbox (badness 1838) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
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Underfull \hbox (badness 2197) in paragraph at lines 4750--4760
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
Underfull \hbox (badness 1571) in paragraph at lines 4816--4820
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2048] [2049] [2050] [2051]) (./utils-pkg.tex [2052]
Chapter 14.
[2053]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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Underfull \hbox (badness 10000) in paragraph at lines 726--732
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2064] [2065] [2066]
Underfull \hbox (badness 3861) in paragraph at lines 931--936
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
[2067] [2068] [2069]
Underfull \hbox (badness 3323) in paragraph at lines 1115--1123
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 2875) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
Underfull \hbox (badness 1817) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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Underfull \hbox (badness 1371) in paragraph at lines 1638--1640
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2078]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 1708.
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2089] [2090] [2091] [2092] [2093] [2094]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again>
\relax
l.2711 ... the Clipboard in MS Windows}{clipboard}
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Underfull \hbox (badness 6842) in paragraph at lines 4010--4015
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
Underfull \hbox (badness 1430) in paragraph at lines 4073--4077
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
Underfull \hbox (badness 1184) in paragraph at lines 4144--4160
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
Underfull \hbox (badness 1019) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
Underfull \hbox (badness 1668) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2117] [2118]
Underfull \hbox (badness 10000) in paragraph at lines 4285--4287
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
[2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129]
[2130]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format})
has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
[2131] [2132] [2133]
[2134] [2135] [2136] [2137] [2138] [2139]
Underfull \hbox (badness 1622) in paragraph at lines 5577--5581
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
[2140] [2141] [2142] [2143] [2144] [2145]
Underfull \hbox (badness 1448) in paragraph at lines 5956--5961
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 6502.
Underfull \hbox (badness 1371) in paragraph at lines 6506--6508
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2154]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6595--6600
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
[2155] [2156] [2157]
Underfull \hbox (badness 10000) in paragraph at lines 6768--6777
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2158]
Underfull \hbox (badness 2150) in paragraph at lines 6832--6835
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
to search. See
[2159] [2160]
Underfull \hbox (badness 3118) in paragraph at lines 6971--6973
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2161] [2162] [2163]
Underfull \hbox (badness 1325) in paragraph at lines 7150--7154
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2164]
Underfull \hbox (badness 1424) in paragraph at lines 7242--7245
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2165]
Underfull \hbox (badness 3219) in paragraph at lines 7313--7320
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7313--7320
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly
Underfull \hbox (badness 2932) in paragraph at lines 7321--7324
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2166]
Underfull \hbox (badness 1024) in paragraph at lines 7448--7451
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2167]
Underfull \hbox (badness 10000) in paragraph at lines 7481--7486
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178]
[2179]
Underfull \hbox (badness 10000) in paragraph at lines 8185--8187
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190]
[2191]
Underfull \hbox (badness 2310) in paragraph at lines 8945--8950
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
[2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199]
Underfull \hbox (badness 1248) in paragraph at lines 9471--9475
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2200]
Underfull \hbox (badness 1789) in paragraph at lines 9551--9553
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
more dis-cus-sion of the
[2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211]
[2212] [2213]
Underfull \hbox (badness 1097) in paragraph at lines 10388--10391
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2214] [2215]
Underfull \hbox (badness 3000) in paragraph at lines 10524--10529
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;
[2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224]
Underfull \hbox (badness 2134) in paragraph at lines 11113--11118
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
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[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
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[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
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\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
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[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
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[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
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[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
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[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
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\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
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[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
Underfull \vbox (badness 3803) has occurred while \output is active [430]
Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
Underfull \hbox (badness 1253) in paragraph at lines 28390--28394
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445]
[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
[450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476]
Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
Underfull \hbox (badness 1163) in paragraph at lines 31344--31355
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
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[509] [510] [511] [512] [513] [514] [515]
Underfull \hbox (badness 1655) in paragraph at lines 33626--33628
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
[535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546]
[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563]
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 10000) in paragraph at lines 37483--37485
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[576]
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[578] [579] [580] [581] [582]
Underfull \hbox (badness 2913) in paragraph at lines 37903--37907
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
Underfull \hbox (badness 1072) in paragraph at lines 38149--38153
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 38154--38158
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 38209--38216
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[587] [588] [589]
Underfull \hbox (badness 2644) in paragraph at lines 38444--38448
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
Underfull \hbox (badness 1142) in paragraph at lines 38597--38603
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 1158) in paragraph at lines 39914--39916
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 1137) in paragraph at lines 40505--40511
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
Underfull \hbox (badness 4967) in paragraph at lines 40524--40529
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
Underfull \hbox (badness 1616) in paragraph at lines 40644--40649
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 1472) in paragraph at lines 41191--41194
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
[634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645]
[646] [647] [648]
Underfull \hbox (badness 10000) in paragraph at lines 42117--42121
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
Underfull \hbox (badness 10000) in paragraph at lines 42368--42371
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
Underfull \hbox (badness 10000) in paragraph at lines 42552--42556
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
Underfull \hbox (badness 10000) in paragraph at lines 43191--43194
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[665] [666] [667] [668] [669] [670]
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[672] [673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 1990) in paragraph at lines 44113--44121
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 44113--44121
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690]
[691] [692] [693]
Underfull \hbox (badness 2452) in paragraph at lines 45082--45088
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[700] [701]
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
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[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
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\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
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[881] [882]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
[887]
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[888]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[895] [896]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
[897] [898] [899] [900] [901] [902] [903] [904]
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[905] [906]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[920] [921] [922] [923] [924]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
[931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942]
[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
[947] [948] [949] [950] [951] [952]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
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[][]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
[1237] [1238] [1239]
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1261]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
[1286] [1287]
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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\relax
l.7237 \aliasA{Complex}{S4groupGeneric}{Complex}
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l.7239 \aliasA{Logic}{S4groupGeneric}{Logic}
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s been already used, duplicate ignored
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l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
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l.7243 \aliasA{Summary}{S4groupGeneric}{Summary}
[1310]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
[1311] [1312] [1313]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1356] [1357] [1358] [1359]) (./parallel-pkg.tex [1360]
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
[1383] [1384] [1385]) (./splines-pkg.tex [1386]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[1414] [1415] [1416]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1458]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1459]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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Underfull \hbox (badness 2556) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7493--7496
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1549] [1550]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
[1577]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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l.11963 \aliasA{hat}{influence.measures}{hat}
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
[1604] [1605] [1606] [1607] [1608] [1609]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1633] [1634]
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
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[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1706] [1707] [1708]
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
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[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725]
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
[1726] [1727] [1728] [1729] [1730]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
[1731] [1732] [1733] [1734] [1735] [1736]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
[1749] [1750] [1751] [1752] [1753] [1754] [1755]
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766]
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[1778]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1779] [1780] [1781] [1782] [1783] [1784] [1785]
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\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
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[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797]
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
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\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1804]
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
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[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827]
[1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838]
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
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[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
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[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
Underfull \hbox (badness 3514) in paragraph at lines 28050--28055
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29239--29241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
Underfull \hbox (badness 5431) in paragraph at lines 29449--29452
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
[1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901]
[1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
Underfull \hbox (badness 3557) in paragraph at lines 31217--31221
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
[1910] [1911] [1912]
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[1914] [1915]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32317--32317
[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
[1928] [1929] [1930]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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[1942] [1943] [1944]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again>
\relax
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
[1949] [1950] [1951] [1952] [1953] [1954] [1955]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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(Font) using `T1/zi4/m/n' instead on input line 72.
[1972]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1973] [1974]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
[1975] [1976]
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988]
[1989]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
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[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1996] [1997]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
been already used, duplicate ignored
<to be read again>
\relax
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again>
\relax
l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
[2002] [2003] [2004]
[2005] [2006]
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[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
[2007] [2008] [2009]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
[2010] [2011] [2012] [2013] [2014] [2015] [2016]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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(Font) using `T1/zi4/m/it' instead on input line 2894.
[2017] [2018] [2019] [2020] [2021]
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[2033]
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[2034] [2035]
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2036] [2037] [2038] [2039] [2040] [2041]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
[2042]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
[2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2048] [2049] [2050] [2051]) (./utils-pkg.tex [2052]
Chapter 14.
[2053]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
[2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063]
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2064] [2065] [2066]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 3323) in paragraph at lines 1115--1123
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 2875) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
Underfull \hbox (badness 1817) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1127--1129
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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Underfull \hbox (badness 1371) in paragraph at lines 1638--1640
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2078]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 1708.
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again>
\relax
l.2711 ... the Clipboard in MS Windows}{clipboard}
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Underfull \hbox (badness 6842) in paragraph at lines 4010--4015
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
Underfull \hbox (badness 1430) in paragraph at lines 4073--4077
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
Underfull \hbox (badness 1184) in paragraph at lines 4144--4160
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
Underfull \hbox (badness 1019) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
Underfull \hbox (badness 1668) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2117] [2118]
Underfull \hbox (badness 10000) in paragraph at lines 4285--4287
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2130]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format})
has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
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Underfull \hbox (badness 1622) in paragraph at lines 5577--5581
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
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Underfull \hbox (badness 1448) in paragraph at lines 5956--5961
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 6502.
Underfull \hbox (badness 1371) in paragraph at lines 6506--6508
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2154]
Underfull \hbox (badness 1502) in paragraph at lines 6595--6600
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6595--6600
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
[2155] [2156] [2157]
Underfull \hbox (badness 10000) in paragraph at lines 6768--6777
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2158]
Underfull \hbox (badness 2150) in paragraph at lines 6832--6835
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
to search. See
[2159] [2160]
Underfull \hbox (badness 3118) in paragraph at lines 6971--6973
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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Underfull \hbox (badness 1325) in paragraph at lines 7150--7154
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2164]
Underfull \hbox (badness 1424) in paragraph at lines 7242--7245
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2165]
Underfull \hbox (badness 3219) in paragraph at lines 7313--7320
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7313--7320
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly
Underfull \hbox (badness 2932) in paragraph at lines 7321--7324
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2166]
Underfull \hbox (badness 1024) in paragraph at lines 7448--7451
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2167]
Underfull \hbox (badness 10000) in paragraph at lines 7481--7486
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[2179]
Underfull \hbox (badness 10000) in paragraph at lines 8185--8187
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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Underfull \hbox (badness 2310) in paragraph at lines 8945--8950
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
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Underfull \hbox (badness 1248) in paragraph at lines 9471--9475
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2200]
Underfull \hbox (badness 1789) in paragraph at lines 9551--9553
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
more dis-cus-sion of the
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Underfull \hbox (badness 1097) in paragraph at lines 10388--10391
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2214] [2215]
Underfull \hbox (badness 3000) in paragraph at lines 10524--10529
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;
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Underfull \hbox (badness 2134) in paragraph at lines 11113--11118
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2225]
Underfull \hbox (badness 10000) in paragraph at lines 11169--11174
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 11169--11174
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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Underfull \hbox (badness 2469) in paragraph at lines 11663--11667
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11663--11667
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
= Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
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Underfull \hbox (badness 4060) in paragraph at lines 12087--12090
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able
Overfull \hbox (18.77168pt too wide) in paragraph at lines 12110--12110
[]\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[]
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Underfull \hbox (badness 2150) in paragraph at lines 12365--12367
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
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Underfull \hbox (badness 10000) in paragraph at lines 12585--12589
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10
is now taken from the en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 12618--12624
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2248]
Underfull \hbox (badness 2762) in paragraph at lines 12633--12641
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
Underfull \hbox (badness 4779) in paragraph at lines 12852--12854
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
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Underfull \hbox (badness 1077) in paragraph at lines 12882--12889
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
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Underfull \hbox (badness 3780) in paragraph at lines 13290--13294
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 13306--13309
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
[2259] [2260] [2261]
Underfull \hbox (badness 2302) in paragraph at lines 13511--13513
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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Underfull \hbox (badness 10000) in paragraph at lines 13810--13815
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not
have
Underfull \hbox (badness 5970) in paragraph at lines 13819--13822
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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Underfull \hbox (badness 2932) in paragraph at lines 14252--14259
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,
Underfull \hbox (badness 1688) in paragraph at lines 14252--14259
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-
[2274] [2275] [2276]
Underfull \hbox (badness 1460) in paragraph at lines 14417--14425
\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n
/10 which used
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Underfull \hbox (badness 6510) in paragraph at lines 14567--14571
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able
Underfull \hbox (badness 10000) in paragraph at lines 14574--14577
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup
. org /
Underfull \hbox (badness 2245) in paragraph at lines 14574--14577
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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Underfull \hbox (badness 10000) in paragraph at lines 15243--15248
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to
Underfull \hbox (badness 3861) in paragraph at lines 15243--15248
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and
Underfull \hbox (badness 1052) in paragraph at lines 15249--15251
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
in-stall. See
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Underfull \hbox (badness 10000) in paragraph at lines 15308--15311
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[2301] [2302] [2303] [2304]) (./refman.ind [2305] [2306] [2307] [2308] [2309]
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
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[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16]
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@textrm (@texttt https:// cran. r-project. org/ bin/ windows/ Rtools/ rt
ools42/ rtools. html[]@textrm )[][].
[17] [18] Chapter 4 [19] [20] [21]
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@texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex
trm , @texttt org.r-project.x86_
Chapter 5 [22] Chapter 6 [23]
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[]@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met
hods"[]
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
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ase/ howto-R-4. 2. html[]@textrm )[][] for
[26] [27] [28]
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[]@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm
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[29] [30] [31] [32]
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[]@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[]
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
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[42] [43] [44] [45]
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[]@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[]
[46] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58]
[59] Appendix C [60] [61] [62] [63]
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[64] [65] [66]
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[68]
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[]@textrm For In-tel Big Sur and later there is [][]@texttt https:// github.
com/ fxcoudert/
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an-Intel-11.
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ntel-12.
[69]
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[70]
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[71] [72]
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ckage=jdk[][][] @textrm and
[73] [74]
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i.a[]
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[] @textrm and
[75]
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[76] (Function and variable index) [77]
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[80] )
(see the transcript file for additional information)
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Chapter 1
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16]
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[17] [18] Chapter 4 [19] [20] [21]
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Chapter 5 [22] Chapter 6 [23]
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[]@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met
hods"[]
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
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ase/ howto-R-4. 2. html[]@textrm )[][] for
[26] [27] [28]
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[29] [30] [31] [32]
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Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
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[46] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58]
[59] Appendix C [60] [61] [62] [63]
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Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
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[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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[]@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[]
[58] [59] [60]
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[] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[]
[61]
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[]@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[]
[62] [63] [64] [65] [66]
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[]@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
20 21)[]
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[]@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[]
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[] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse
= "."))[]
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[] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[]
[67]
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[]@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor
version 52.0[]
[68] [69] [70] [71]
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[]@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[]
[72] [73]
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@texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc.
gnu. org/ onlinedocs/ gcc/
[74] [75]
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[]@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[]
[76]
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[]@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[]
[77]
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[]@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[]
[78]
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[][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0
/ rc2/ tools/ clang/ docs/ ReleaseNotes. html#
[79] [80] [81]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6345--6345
[]@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[]
[82] [83] [84] Chapter 2 [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
[95] [96] [97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 7607--7614
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[99] [100] [101] [102] [103] [104] Chapter 3 [105] [106] [107] [108] [109]
[110]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 8531--8531
[] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
28)))[]
[111] [112] Chapter 4 [113] [114] [115] [116]
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[]@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[]
[117]
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[]@smalltt Message: Error: no valid set of coefficients has been found: pleas
e supply starting values[]
[118]
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[]@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[119] [120] [121] [122]
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@texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang.
llvm. org/ docs/ AddressSanitizer.
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[][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/
LightningTalks/ EuroLLVM%202014%20--%20container%20overflow.
[123] [124]
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[]@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[125]
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[][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s
hould-know. html[][][]
[126]
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[]@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1.
0/ gcc/ Static-Analyzer-Options.
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[]@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[]
[127]
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[] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[]
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[] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[]
[128]
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[]@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[]
[129] [130] [131]
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[][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t
runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm :
[132]
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[]@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][]
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[]@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][]
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[]@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][]
[133]
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[] @tex
ttt 1[]
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[] @tex
ttt 1[]
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[]@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to
INTEGER(4)[]
Chapter 5 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144]
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[] @texttt double *w, int *iper, double *span, double *al
pha,[]
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[]@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[]
[145] [146]
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[] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[]
[147] [148] [149] [150] [151] [152]
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[]@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[]
[153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
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[] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[]
[164]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[165] [166] [167] [168] [169] [170] [171]
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[] @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[]
[172] [173]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
[174]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
[175]
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[] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[]
[176] [177]
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[]@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[]
[178]
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[] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[]
[179] [180]
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[]@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[]
Chapter 6 [181] [182] [183] [184] [185] [186] [187] [188]
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[] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[]
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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
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[][]@texttt https:// www. intel. com/ content/ www/ us/ en/ develop/ d
ocumentation/
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere
nce/
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@texttt mixed-language-programming/ standard-tools-for-interoperability/ bind
. html[][][]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198]
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[]@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[199] Warning: unbalanced parentheses in @def... [200] [201]
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[] @texttt void (*clean)(void *data, Rboolean jump), void
*cdata,[]
[202] [203] [204] [205] [206] Chapter 7 [207] [208] Chapter 8 [209] [210]
[211]
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[]@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[]
[212]
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[]@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
int);[]
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[]@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[]
[213] [214] [215] [216] [217] [218] [219] [220] [221]
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[]@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [222]
No file R-exts.vrs.
(Concept index) [223]
No file R-exts.cps.
[224] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
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(Acknowledgements)
(/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-exts.aux)
Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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[] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[]
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[] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[]
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[] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[]
[20]
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@texttt org/ package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @
textrm (@texttt https:// CRAN. R-project. org/
[21] [22] [23] [24] [25]
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[]@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[]
[26] [27] [28]
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[]@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[]
[29] [30] [31] [32] [33]
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[]@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[]
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[]@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[]
[34] [35]
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[]@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]
[36] [37]
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[] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[]
[38]
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[][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen
ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[39] [40]
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[]@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[]
[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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[]@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[]
[58] [59] [60]
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[] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[]
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[]@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[]
[61] [62] [63] [64] [65] [66]
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[]@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
20 21)[]
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[]@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[]
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[] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse
= "."))[]
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[] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[]
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[]@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor
version 52.0[]
[67] [68] [69] [70] [71]
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[]@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[]
[72] [73]
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@texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc.
gnu. org/ onlinedocs/ gcc/
[74] [75]
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[]@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[]
[76]
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[]@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[]
[77]
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[]@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[]
[78]
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[][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0
/ rc2/ tools/ clang/ docs/ ReleaseNotes. html#
[79] [80] [81]
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[]@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[]
[82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
[95] [96] [97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 7607--7614
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[99] [100] [101] [102] [103] [104] Chapter 3 [105] [106] [107] [108] [109]
[110]
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[] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
28)))[]
[111] [112] Chapter 4 [113] [114] [115] [116]
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[]@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[]
[117]
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[]@smalltt Message: Error: no valid set of coefficients has been found: pleas
e supply starting values[]
[118]
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[]@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[119] [120] [121] [122]
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@texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang.
llvm. org/ docs/ AddressSanitizer.
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[][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/
LightningTalks/ EuroLLVM%202014%20--%20container%20overflow.
[123] [124]
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[]@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[125]
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[][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s
hould-know. html[][][]
[126]
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[]@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1.
0/ gcc/ Static-Analyzer-Options.
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[]@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[]
[127]
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[] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[]
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[] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[]
[128]
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[]@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[]
[129] [130] [131]
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[][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t
runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm :
[132]
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[]@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][]
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[]@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][]
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[]@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][]
[133]
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[] @tex
ttt 1[]
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[] @tex
ttt 1[]
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[]@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to
INTEGER(4)[]
Chapter 5 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144]
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[] @texttt double *w, int *iper, double *span, double *al
pha,[]
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[]@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[]
[145] [146]
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[] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[]
[147] [148] [149] [150] [151] [152]
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[]@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[]
[153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
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[] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[]
[164]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[165] [166] [167] [168] [169] [170] [171]
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[] @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[]
[172] [173]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
[174]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
[175]
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[] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[]
[176] [177]
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[]@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[]
[178]
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[] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[]
[179] [180]
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[]@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[]
Chapter 6 [181] [182] [183] [184] [185] [186] [187] [188]
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[] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[]
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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
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[][]@texttt https:// www. intel. com/ content/ www/ us/ en/ develop/ d
ocumentation/
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere
nce/
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@texttt mixed-language-programming/ standard-tools-for-interoperability/ bind
. html[][][]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198]
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[]@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[199] Warning: unbalanced parentheses in @def... [200] [201]
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[] @texttt void (*clean)(void *data, Rboolean jump), void
*cdata,[]
[202] [203] [204] [205] [206] Chapter 7 [207] [208] Chapter 8 [209] [210]
[211]
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[]@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[]
[212]
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[]@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
int);[]
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[]@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[]
[213] [214] [215] [216] [217] [218] [219] [220] [221]
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[]@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [222]
(/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-exts.vrs [223]
[224] [225] [226]) (Concept index) [227]
(/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-exts.cps [228])
[229] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (236 pages, 1051063 bytes).
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tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
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) localization, formatting, and turning on texinfo input format.)
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[-2] [-3] [-4]) [-5]
(/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-exts.toc)
(/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-exts.toc)
(Acknowledgements)
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Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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[] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[]
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[] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[]
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[] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[]
[20]
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@texttt org/ package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @
textrm (@texttt https:// CRAN. R-project. org/
[21] [22] [23] [24] [25]
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[]@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[]
[26] [27] [28]
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[]@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[]
[29] [30] [31] [32] [33]
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[]@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[]
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[]@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[]
[34] [35]
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[]@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]
[36] [37]
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[] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[]
[38]
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[][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen
ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[39] [40]
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[]@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[]
[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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[]@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[]
[58] [59] [60]
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[] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[]
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[]@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[]
[61] [62] [63] [64] [65] [66]
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[]@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
20 21)[]
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[]@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[]
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[] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse
= "."))[]
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[] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[]
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[]@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor
version 52.0[]
[67] [68] [69] [70] [71]
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[]@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[]
[72] [73]
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@texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc.
gnu. org/ onlinedocs/ gcc/
[74] [75]
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[]@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[]
[76]
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[]@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[]
[77]
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[]@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[]
[78]
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[][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0
/ rc2/ tools/ clang/ docs/ ReleaseNotes. html#
[79] [80] [81]
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[]@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[]
[82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
[95] [96] [97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 7607--7614
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[99] [100] [101] [102] [103] [104] Chapter 3 [105] [106] [107] [108] [109]
[110]
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[] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
28)))[]
[111] [112] Chapter 4 [113] [114] [115] [116]
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[]@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[]
[117]
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[]@smalltt Message: Error: no valid set of coefficients has been found: pleas
e supply starting values[]
[118]
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[]@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[119] [120] [121] [122]
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@texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang.
llvm. org/ docs/ AddressSanitizer.
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[][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/
LightningTalks/ EuroLLVM%202014%20--%20container%20overflow.
[123] [124]
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[]@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[125]
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[][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s
hould-know. html[][][]
[126]
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[]@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1.
0/ gcc/ Static-Analyzer-Options.
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[]@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[]
[127]
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[] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[]
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[] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[]
[128]
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[]@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[]
[129] [130] [131]
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[][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t
runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm :
[132]
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[]@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][]
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[]@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][]
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[]@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][]
[133]
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[] @tex
ttt 1[]
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[] @tex
ttt 1[]
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[]@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to
INTEGER(4)[]
Chapter 5 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144]
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[] @texttt double *w, int *iper, double *span, double *al
pha,[]
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[]@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[]
[145] [146]
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[] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[]
[147] [148] [149] [150] [151] [152]
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[]@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[]
[153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
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[] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[]
[164]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[165] [166] [167] [168] [169] [170] [171]
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[] @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[]
[172] [173]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
[174]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
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[] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[]
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[] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[]
[175]
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[] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[]
[176] [177]
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[]@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[]
[178]
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[] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[]
[179] [180]
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[]@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[]
Chapter 6 [181] [182] [183] [184] [185] [186] [187] [188]
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[] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[]
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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
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[][]@texttt https:// www. intel. com/ content/ www/ us/ en/ develop/ d
ocumentation/
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere
nce/
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@texttt mixed-language-programming/ standard-tools-for-interoperability/ bind
. html[][][]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198]
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[]@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[199] Warning: unbalanced parentheses in @def... [200] [201]
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[] @texttt void (*clean)(void *data, Rboolean jump), void
*cdata,[]
[202] [203] [204] [205] [206] Chapter 7 [207] [208] Chapter 8 [209] [210]
[211]
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[]@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[]
[212]
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[]@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
int);[]
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[]@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[]
[213] [214] [215] [216] [217] [218] [219] [220] [221]
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[]@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [222]
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[224] [225] [226]) (Concept index) [227]
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FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
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(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
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@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd
. debian. org/ build. php? & pkg=r-base[][][]@textrm ),
[3] [4] [5] [6]
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[]@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
.
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@textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7,
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[][]@texttt https:// master. bioconductor. org/ help/ publications/ book
s/
[7]
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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/
10. 1080/ 10618600. 1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra
mming_language#
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@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
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[39]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https:// CRAN. R-project. org/
[40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] [46] Chapter 10 [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
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tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
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Chapter 1 (/build/reproducible-path/r-base-4.2.2.20221110/doc/manual/R-FAQ.aux)
[1] Chapter 2 [2]
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[3] [4] [5] [6]
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[]@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
.
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@textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7,
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[][]@texttt https:// master. bioconductor. org/ help/ publications/ book
s/
[7]
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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/
10. 1080/ 10618600. 1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra
mming_language#
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@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
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[39]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https:// CRAN. R-project. org/
[40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] [46] Chapter 10 [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </build/reproducible-path/r-base-4.2.2.20221110/doc/ma
nual/images/hist.pdf> </build/reproducible-path/r-base-4.2.2.20221110/doc/manua
l/images/ecdf.pdf> [38] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/QQ.pdf> [39] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/ice.pdf> [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59]
[60]
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@texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm ,
@texttt identity[]@textrm ,
[61] [62] [63] [64] [65]
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[][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm
(@texttt https:// CRAN. R-project. org/
[66] Chapter 12 [67] [68] [69] [70] [71]
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[]@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[]
[72] [73] [74] [75] [76] </build/reproducible-path/r-base-4.2.2.20221110/doc/ma
nual/images/fig11.pdf> [77] </build/reproducible-path/r-base-4.2.2.20221110/doc
/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
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[]@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
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Chapter 1 [1]
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
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nual/images/hist.pdf> </build/reproducible-path/r-base-4.2.2.20221110/doc/manua
l/images/ecdf.pdf> [38] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/QQ.pdf> [39] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/ice.pdf> [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59]
[60]
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[61] [62] [63] [64] [65]
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[][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm
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[66] Chapter 12 [67] [68] [69] [70] [71]
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[83] Chapter 14 [84] [85]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
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nual/images/hist.pdf> </build/reproducible-path/r-base-4.2.2.20221110/doc/manua
l/images/ecdf.pdf> [38] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/QQ.pdf> [39] </build/reproducible-path/r-base-4.2.2.20221110/doc/man
ual/images/ice.pdf> [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46]
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[60]
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[61] [62] [63] [64] [65]
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[][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm
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[66] Chapter 12 [67] [68] [69] [70] [71]
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[83] Chapter 14 [84] [85]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
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[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
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[48] Chapter 7 [49]
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tbf codetools
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[56] [57] [58] [59] [60] [61] [62] [63]
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[64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69]
[70] (Function and variable index) [71] [72]
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] Chapter 7 [49]
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[70] (Function and variable index) [71] [72]
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atrix 1.2-6[]
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[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
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[70] (Function and variable index) [71] [72]
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[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
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[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
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[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
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\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
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[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
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[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
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[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[326] [327]
Underfull \hbox (badness 1675) in paragraph at lines 21246--21255
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3189) in paragraph at lines 21256--21271
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
Underfull \hbox (badness 10000) in paragraph at lines 21306--21309
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
Underfull \hbox (badness 4752) in paragraph at lines 21306--21309
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
[328] [329]
Underfull \hbox (badness 1014) in paragraph at lines 21440--21445
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
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Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
Underfull \hbox (badness 1253) in paragraph at lines 28390--28394
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445]
[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
[450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476]
Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
Underfull \hbox (badness 1163) in paragraph at lines 31344--31355
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
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[509] [510] [511] [512] [513] [514] [515]
Underfull \hbox (badness 1655) in paragraph at lines 33626--33628
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
[535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546]
[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563]
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 10000) in paragraph at lines 37483--37485
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[576]
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[578] [579] [580] [581] [582]
Underfull \hbox (badness 2913) in paragraph at lines 37903--37907
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
Underfull \hbox (badness 1072) in paragraph at lines 38149--38153
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 38154--38158
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 38209--38216
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[587] [588] [589]
Underfull \hbox (badness 2644) in paragraph at lines 38444--38448
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
Underfull \hbox (badness 1142) in paragraph at lines 38597--38603
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 1158) in paragraph at lines 39914--39916
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 1137) in paragraph at lines 40505--40511
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
Underfull \hbox (badness 4967) in paragraph at lines 40524--40529
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
Underfull \hbox (badness 1616) in paragraph at lines 40644--40649
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 1472) in paragraph at lines 41191--41194
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
[634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645]
[646] [647] [648]
Underfull \hbox (badness 10000) in paragraph at lines 42117--42121
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
Underfull \hbox (badness 10000) in paragraph at lines 42368--42371
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
Underfull \hbox (badness 10000) in paragraph at lines 42552--42556
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
Underfull \hbox (badness 10000) in paragraph at lines 43191--43194
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[665] [666] [667] [668] [669] [670]
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[672] [673] [674] [675] [676] [677] [678]
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[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[691] [692] [693]
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[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
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[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
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\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
[820] [821] [822] [823]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[824] [825]
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
[838]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
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[881] [882]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
[883] [884] [885] [886]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
[887]
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[888]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[891]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[895] [896]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
[897] [898] [899] [900] [901] [902] [903] [904]
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[905] [906]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[920] [921] [922] [923] [924]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
[931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942]
[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
[947] [948] [949] [950] [951] [952]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
[970]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
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[][]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[1310]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
[1311] [1312] [1313]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1356] [1357] [1358] [1359]) (./parallel-pkg.tex [1360]
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
[1383] [1384] [1385]) (./splines-pkg.tex [1386]
Chapter 9.
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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[1414] [1415] [1416]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1458]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
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[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
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[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
[1726] [1727] [1728] [1729] [1730]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1779] [1780] [1781] [1782] [1783] [1784] [1785]
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\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
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[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
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\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
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[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827]
[1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838]
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
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[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
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[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
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[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
[1928] [1929] [1930]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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[1972]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1973] [1974]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[1989]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
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[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
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<to be read again>
\relax
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
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MD}) has been already used, duplicate ignored
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l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
[2002] [2003] [2004]
[2005] [2006]
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[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
[2010] [2011] [2012] [2013] [2014] [2015] [2016]
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[2017] [2018] [2019] [2020] [2021]
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[2033]
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2036] [2037] [2038] [2039] [2040] [2041]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
[2042]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
[2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
Underfull \hbox (badness 1571) in paragraph at lines 4816--4820
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2048] [2049] [2050] [2051]) (./utils-pkg.tex [2052]
Chapter 14.
[2053]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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Underfull \hbox (badness 10000) in paragraph at lines 726--732
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 726--732
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2064] [2065] [2066]
Underfull \hbox (badness 3861) in paragraph at lines 931--936
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
[2067] [2068] [2069]
Underfull \hbox (badness 3323) in paragraph at lines 1115--1123
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
Underfull \hbox (badness 2961) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 2875) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
Underfull \hbox (badness 1817) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1127--1129
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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Underfull \hbox (badness 1371) in paragraph at lines 1638--1640
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2078]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 1708.
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Underfull \hbox (badness 2057) in paragraph at lines 2359--2361
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2089] [2090] [2091] [2092] [2093] [2094]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again>
\relax
l.2711 ... the Clipboard in MS Windows}{clipboard}
[2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111] [2112] [2113] [2114]
Underfull \hbox (badness 6842) in paragraph at lines 4010--4015
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
Underfull \hbox (badness 1430) in paragraph at lines 4073--4077
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
Underfull \hbox (badness 1184) in paragraph at lines 4144--4160
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
Underfull \hbox (badness 1019) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
Underfull \hbox (badness 1668) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2117] [2118]
Underfull \hbox (badness 10000) in paragraph at lines 4285--4287
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
[2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129]
[2130]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format})
has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
[2131] [2132] [2133]
[2134] [2135] [2136] [2137] [2138] [2139]
Underfull \hbox (badness 1622) in paragraph at lines 5577--5581
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
[2140] [2141] [2142] [2143] [2144] [2145]
Underfull \hbox (badness 1448) in paragraph at lines 5956--5961
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font) using `T1/zi4/m/it' instead on input line 6502.
Underfull \hbox (badness 1371) in paragraph at lines 6506--6508
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2154]
Underfull \hbox (badness 1502) in paragraph at lines 6595--6600
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6595--6600
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
[2155] [2156] [2157]
Underfull \hbox (badness 10000) in paragraph at lines 6768--6777
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2158]
Underfull \hbox (badness 2150) in paragraph at lines 6832--6835
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
to search. See
[2159] [2160]
Underfull \hbox (badness 3118) in paragraph at lines 6971--6973
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2161] [2162] [2163]
Underfull \hbox (badness 1325) in paragraph at lines 7150--7154
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2164]
Underfull \hbox (badness 1424) in paragraph at lines 7242--7245
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2165]
Underfull \hbox (badness 3219) in paragraph at lines 7313--7320
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7313--7320
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7313--7320
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly
Underfull \hbox (badness 2932) in paragraph at lines 7321--7324
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2166]
Underfull \hbox (badness 1024) in paragraph at lines 7448--7451
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2167]
Underfull \hbox (badness 10000) in paragraph at lines 7481--7486
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178]
[2179]
Underfull \hbox (badness 10000) in paragraph at lines 8185--8187
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190]
[2191]
Underfull \hbox (badness 2310) in paragraph at lines 8945--8950
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
[2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199]
Underfull \hbox (badness 1248) in paragraph at lines 9471--9475
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2200]
Underfull \hbox (badness 1789) in paragraph at lines 9551--9553
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
more dis-cus-sion of the
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[2212] [2213]
Underfull \hbox (badness 1097) in paragraph at lines 10388--10391
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2214] [2215]
Underfull \hbox (badness 3000) in paragraph at lines 10524--10529
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;
[2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224]
Underfull \hbox (badness 2134) in paragraph at lines 11113--11118
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2225]
Underfull \hbox (badness 10000) in paragraph at lines 11169--11174
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 11169--11174
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
[2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233]
Underfull \hbox (badness 2469) in paragraph at lines 11663--11667
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11663--11667
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
= Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2234] [2235] [2236] [2237] [2238] [2239]
Underfull \hbox (badness 4060) in paragraph at lines 12087--12090
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able
Overfull \hbox (18.77168pt too wide) in paragraph at lines 12110--12110
[]\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[]
[2240] [2241] [2242] [2243]
Underfull \hbox (badness 2150) in paragraph at lines 12365--12367
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
[2244] [2245] [2246] [2247]
Underfull \hbox (badness 10000) in paragraph at lines 12585--12589
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10
is now taken from the en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 12618--12624
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2248]
Underfull \hbox (badness 2762) in paragraph at lines 12633--12641
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
[2249] [2250]
Underfull \hbox (badness 1009) in paragraph at lines 12812--12824
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
Underfull \hbox (badness 4779) in paragraph at lines 12852--12854
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
[2251]
Underfull \hbox (badness 1077) in paragraph at lines 12882--12889
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
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Underfull \hbox (badness 3780) in paragraph at lines 13290--13294
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 13306--13309
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
[2259] [2260] [2261]
Underfull \hbox (badness 2302) in paragraph at lines 13511--13513
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2262] [2263] [2264] [2265] [2266]
Underfull \hbox (badness 10000) in paragraph at lines 13810--13815
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not
have
Underfull \hbox (badness 5970) in paragraph at lines 13819--13822
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2267] [2268] [2269] [2270] [2271] [2272] [2273]
Underfull \hbox (badness 2932) in paragraph at lines 14252--14259
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,
Underfull \hbox (badness 1688) in paragraph at lines 14252--14259
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-
[2274] [2275] [2276]
Underfull \hbox (badness 1460) in paragraph at lines 14417--14425
\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n
/10 which used
[2277] [2278]
Underfull \hbox (badness 6510) in paragraph at lines 14567--14571
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able
Underfull \hbox (badness 10000) in paragraph at lines 14574--14577
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup
. org /
Underfull \hbox (badness 2245) in paragraph at lines 14574--14577
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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Underfull \hbox (badness 10000) in paragraph at lines 15243--15248
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to
Underfull \hbox (badness 3861) in paragraph at lines 15243--15248
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
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n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
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[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[59] [60] [61]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
[113] [114]
Underfull \vbox (badness 3803) has occurred while \output is active [115]
Underfull \vbox (badness 10000) has occurred while \output is active [116]
[117] [118] [119] [120] [121] [122] [123]
Underfull \hbox (badness 2096) in paragraph at lines 7962--7966
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[124] [125]
Underfull \hbox (badness 2351) in paragraph at lines 8076--8079
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
[126] [127] [128] [129] [130]
Underfull \hbox (badness 4479) in paragraph at lines 8393--8404
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[131] [132] [133] [134] [135] [136] [137]
Underfull \hbox (badness 1629) in paragraph at lines 8861--8873
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
Underfull \hbox (badness 2875) in paragraph at lines 8861--8873
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]
Underfull \hbox (badness 1178) in paragraph at lines 9629--9633
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184]
Underfull \hbox (badness 2744) in paragraph at lines 11938--11940
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209] [210] [211] [212] [213] [214] [215] [216]
Underfull \hbox (badness 2253) in paragraph at lines 14134--14136
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
[217]
Underfull \hbox (badness 1490) in paragraph at lines 14169--14172
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[218]
Underfull \hbox (badness 1565) in paragraph at lines 14251--14255
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[219]
Underfull \hbox (badness 4927) in paragraph at lines 14302--14304
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
[220]
Underfull \hbox (badness 3148) in paragraph at lines 14404--14409
[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
[221]
Underfull \hbox (badness 1466) in paragraph at lines 14451--14454
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[222] [223]
Underfull \hbox (badness 10000) in paragraph at lines 14582--14586
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14593--14596
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[224] [225] [226] [227] [228]
Underfull \hbox (badness 3965) in paragraph at lines 14890--14894
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 4429) in paragraph at lines 15679--15682
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[241] [242]
Underfull \hbox (badness 10000) in paragraph at lines 15785--15787
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[243]
Underfull \hbox (badness 2035) in paragraph at lines 15858--15862
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
[244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246] [247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 2452) in paragraph at lines 16471--16475
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16471--16475
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[254] [255]
Underfull \hbox (badness 1092) in paragraph at lines 16644--16649
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[256] [257] [258] [259]
Underfull \hbox (badness 6741) in paragraph at lines 16897--16901
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[260] [261] [262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \vbox (badness 10000) has occurred while \output is active [271]
[272] [273] [274] [275] [276] [277] [278] [279] [280] [281]
Underfull \hbox (badness 1478) in paragraph at lines 18349--18352
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[282] [283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18621--18623
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
Underfull \hbox (badness 2088) in paragraph at lines 18627--18636
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[286] [287] [288] [289] [290] [291] [292] [293] [294] [295]
Underfull \hbox (badness 1442) in paragraph at lines 19235--19237
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[296] [297] [298] [299] [300]
Underfull \hbox (badness 10000) in paragraph at lines 19566--19572
[301] [302] [303] [304]
Underfull \hbox (badness 1248) in paragraph at lines 19811--19814
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[305] [306] [307] [308]
Underfull \hbox (badness 4739) in paragraph at lines 20074--20076
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
[321] [322] [323] [324] [325]
Underfull \hbox (badness 2469) in paragraph at lines 21158--21163
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[326] [327]
Underfull \hbox (badness 1675) in paragraph at lines 21246--21255
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3189) in paragraph at lines 21256--21271
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
Underfull \hbox (badness 10000) in paragraph at lines 21306--21309
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
Underfull \hbox (badness 4752) in paragraph at lines 21306--21309
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
[328] [329]
Underfull \hbox (badness 1014) in paragraph at lines 21440--21445
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
Underfull \vbox (badness 3803) has occurred while \output is active [430]
Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
Underfull \hbox (badness 1253) in paragraph at lines 28390--28394
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
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[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
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Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
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[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
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[509] [510] [511] [512] [513] [514] [515]
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[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
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[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
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[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 10000) in paragraph at lines 37483--37485
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[576]
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Underfull \hbox (badness 2913) in paragraph at lines 37903--37907
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
Underfull \hbox (badness 1072) in paragraph at lines 38149--38153
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 38154--38158
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 38209--38216
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[587] [588] [589]
Underfull \hbox (badness 2644) in paragraph at lines 38444--38448
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
Underfull \hbox (badness 1142) in paragraph at lines 38597--38603
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 1158) in paragraph at lines 39914--39916
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 1137) in paragraph at lines 40505--40511
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
Underfull \hbox (badness 4967) in paragraph at lines 40524--40529
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
Underfull \hbox (badness 1616) in paragraph at lines 40644--40649
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 1472) in paragraph at lines 41191--41194
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
[634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645]
[646] [647] [648]
Underfull \hbox (badness 10000) in paragraph at lines 42117--42121
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
Underfull \hbox (badness 10000) in paragraph at lines 42368--42371
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
Underfull \hbox (badness 10000) in paragraph at lines 42552--42556
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
Underfull \hbox (badness 10000) in paragraph at lines 43191--43194
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
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Underfull \hbox (badness 1990) in paragraph at lines 44113--44121
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 44113--44121
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690]
[691] [692] [693]
Underfull \hbox (badness 2452) in paragraph at lines 45082--45088
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
Underfull \hbox (badness 3668) in paragraph at lines 45480--45482
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[700] [701]
Underfull \hbox (badness 2401) in paragraph at lines 45610--45614
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
Underfull \hbox (badness 2111) in paragraph at lines 45818--45823
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
Underfull \hbox (badness 4001) in paragraph at lines 46064--46066
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
Underfull \hbox (badness 5417) in paragraph at lines 46429--46433
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
Underfull \hbox (badness 10000) in paragraph at lines 46490--46494
[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
[820] [821] [822] [823]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[824] [825]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[831] [832] [833] [834] [835] [836] [837]
Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
[838]
Underfull \hbox (badness 10000) in paragraph at lines 2150--2152
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
[839] [840] [841]
Underfull \hbox (badness 6758) in paragraph at lines 2329--2332
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
[842] [843] [844] [845] [846] [847] [848] [849] [850] [851]
Underfull \hbox (badness 10000) in paragraph at lines 2940--2941
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Underfull \hbox (badness 10000) in paragraph at lines 4016--4019
[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
[869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880]
[881] [882]
Underfull \hbox (badness 1584) in paragraph at lines 4910--4912
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4914--4921
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
[883] [884] [885] [886]
Underfull \hbox (badness 1377) in paragraph at lines 5220--5225
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
[887]
Underfull \hbox (badness 1418) in paragraph at lines 5296--5303
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
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[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
ures//mai.pdf>]
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[][]
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ures//pch.pdf>] [1041]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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l.9018 \HeaderA{units}{Graphical Units}{units}
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1175] [1176]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1261]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
[1262]
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
[1311] [1312] [1313]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1356] [1357] [1358] [1359]) (./parallel-pkg.tex [1360]
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[1377] [1378] [1379] [1380] [1381] [1382]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
[1383] [1384] [1385]) (./splines-pkg.tex [1386]
Chapter 9.
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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1458]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1549] [1550]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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<to be read again>
\relax
l.11963 \aliasA{hat}{influence.measures}{hat}
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
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[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18959--18963
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
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[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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[1778]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
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[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24827--24833
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1804]
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
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[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
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[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
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[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
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[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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[1942] [1943] [1944]
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h.methods}) has been already used, duplicate ignored
<to be read again>
\relax
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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[1972]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[1989]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
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[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1996] [1997]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
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l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
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MD}) has been already used, duplicate ignored
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l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
[2002] [2003] [2004]
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[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
[2010] [2011] [2012] [2013] [2014] [2015] [2016]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[2017] [2018] [2019] [2020] [2021]
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[2033]
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
[2042]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2048] [2049] [2050] [2051]) (./utils-pkg.tex [2052]
Chapter 14.
[2053]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2064] [2065] [2066]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
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\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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l.2711 ... the Clipboard in MS Windows}{clipboard}
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
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\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2117] [2118]
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2130]
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l.5054 ...mat Unordered and Ordered Lists}{format}
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l.5054 ...mat Unordered and Ordered Lists}{format}
[2131] [2132] [2133]
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2154]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
[2155] [2156] [2157]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2158]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
to search. See
[2159] [2160]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2161] [2162] [2163]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2164]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2165]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
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tly
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
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[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
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[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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so be used on Win-dows, in which case
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
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onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
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[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
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[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able
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[]\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
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s / manual /
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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ws and
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,
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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools
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to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup
. org /
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\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to
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[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends
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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results
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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings
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(./fullrefman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
Package rerunfilecheck Warning: File `fullrefman.out' has changed.
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)
(see the transcript file for additional information)
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Chapter 1.
[1] [2]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
[6] [7] [8] [9]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[]
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[97] [98] [99] [100]
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[]\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[]
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
: / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[124] [125]
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
, [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[218]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
[]\T1/zi4/m/n/10 fsep =
[220]
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[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 ,
which calls []\T1/zi4/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10
R \T1/ptm/m/n/10 3.2.0: for use within
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[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16471--16475
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[254] [255]
Underfull \hbox (badness 1092) in paragraph at lines 16644--16649
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[256] [257] [258] [259]
Underfull \hbox (badness 6741) in paragraph at lines 16897--16901
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[260] [261] [262] [263] [264] [265] [266] [267] [268] [269] [270]
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[272] [273] [274] [275] [276] [277] [278] [279] [280] [281]
Underfull \hbox (badness 1478) in paragraph at lines 18349--18352
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[282] [283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18621--18623
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
Underfull \hbox (badness 2088) in paragraph at lines 18627--18636
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[286] [287] [288] [289] [290] [291] [292] [293] [294] [295]
Underfull \hbox (badness 1442) in paragraph at lines 19235--19237
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[296] [297] [298] [299] [300]
Underfull \hbox (badness 10000) in paragraph at lines 19566--19572
[301] [302] [303] [304]
Underfull \hbox (badness 1248) in paragraph at lines 19811--19814
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[305] [306] [307] [308]
Underfull \hbox (badness 4739) in paragraph at lines 20074--20076
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
[321] [322] [323] [324] [325]
Underfull \hbox (badness 2469) in paragraph at lines 21158--21163
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[326] [327]
Underfull \hbox (badness 1675) in paragraph at lines 21246--21255
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3189) in paragraph at lines 21256--21271
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
or empty, the
Underfull \hbox (badness 10000) in paragraph at lines 21306--21309
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-
Underfull \hbox (badness 4752) in paragraph at lines 21306--21309
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may
be opened by
[328] [329]
Underfull \hbox (badness 1014) in paragraph at lines 21440--21445
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341]
[342]
Underfull \hbox (badness 1264) in paragraph at lines 22289--22297
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways
be sup-ported:
[343]
Underfull \hbox (badness 4441) in paragraph at lines 22323--22326
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355]
Underfull \hbox (badness 5231) in paragraph at lines 23120--23122
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367]
[368] [369] [370] [371] [372]
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 24213--24219
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[373] [374] [375] [376] [377] [378] [379] [380]
Underfull \hbox (badness 2790) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24710--24713
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[381] [382] [383] [384] [385]
Underfull \hbox (badness 1194) in paragraph at lines 25033--25036
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[386] [387] [388]
Underfull \hbox (badness 2368) in paragraph at lines 25240--25246
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[389] [390] [391] [392] [393] [394]
Underfull \hbox (badness 10000) in paragraph at lines 25630--25633
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
Underfull \hbox (badness 10000) in paragraph at lines 26251--26253
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417]
Underfull \hbox (badness 1881) in paragraph at lines 27146--27149
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 27171--27173
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[418] [419]
Underfull \hbox (badness 2142) in paragraph at lines 27312--27316
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 27369--27374
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[420] [421] [422] [423]
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27663--27669
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27676--27679
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 2689) in paragraph at lines 27702--27704
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[424]
Underfull \hbox (badness 10000) in paragraph at lines 27744--27749
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27750--27761
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and
Underfull \hbox (badness 7203) in paragraph at lines 27762--27765
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[425] [426] [427] [428] [429]
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Underfull \hbox (badness 10000) in paragraph at lines 28162--28166
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[431] [432]
Underfull \hbox (badness 10000) in paragraph at lines 28309--28312
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[433]
Underfull \hbox (badness 7925) in paragraph at lines 28390--28394
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to
Underfull \hbox (badness 1253) in paragraph at lines 28390--28394
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 )
and [][][]\T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 2521) in paragraph at lines 28395--28404
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445]
[446] [447] [448] [449]
Underfull \hbox (badness 2726) in paragraph at lines 29391--29394
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed
out-put, see
[450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476]
Underfull \hbox (badness 1533) in paragraph at lines 31181--31184
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[477] [478] [479]
Underfull \hbox (badness 1163) in paragraph at lines 31344--31355
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505]
Underfull \hbox (badness 10000) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 33008--33012
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions
of the matches are also re-turned by name.
Underfull \hbox (badness 3557) in paragraph at lines 33029--33031
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / /
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 33032--33036
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[506] [507]
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[509] [510] [511] [512] [513] [514] [515]
Underfull \hbox (badness 1655) in paragraph at lines 33626--33628
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
[528] [529] [530] [531] [532] [533] [534]
Underfull \hbox (badness 2261) in paragraph at lines 34832--34837
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length
1, it ap-plies to all fields; oth-er-wise, if
[535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546]
[547] [548] [549] [550] [551]
Underfull \hbox (badness 10000) in paragraph at lines 35952--35963
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563]
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 10000) in paragraph at lines 37483--37485
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[576]
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[578] [579] [580] [581] [582]
Underfull \hbox (badness 2913) in paragraph at lines 37903--37907
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[583] [584] [585]
Underfull \hbox (badness 1072) in paragraph at lines 38149--38153
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 38154--38158
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[586]
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 38194--38200
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 38209--38216
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 38209--38216
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[587] [588] [589]
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[590] [591] [592]
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[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613]
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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[623]
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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
this may need to be matched ex-plic-itly: for ex-am-ple
[624] [625]
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[626] [627] [628] [629] [630] [631] [632] [633]
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
keep their source in-clud-ing com-ments, see
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[646] [647] [648]
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[649] [650] [651] [652]
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[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[653] [654] [655]
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[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[656] [657] [658] [659] [660] [661] [662] [663] [664]
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[665] [666] [667] [668] [669] [670]
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[672] [673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 1990) in paragraph at lines 44113--44121
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
er-rors that oc-cur dur-ing the eval-u-a-tion. If
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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690]
[691] [692] [693]
Underfull \hbox (badness 2452) in paragraph at lines 45082--45088
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[694] [695] [696] [697] [698] [699]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[700] [701]
Underfull \hbox (badness 2401) in paragraph at lines 45610--45614
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[702] [703] [704]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10
is not empty, these are used as col-umn names.
[705] [706] [707] [708]
Underfull \hbox (badness 4001) in paragraph at lines 46064--46066
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[709] [710] [711] [712] [713] [714]
Underfull \hbox (badness 5417) in paragraph at lines 46429--46433
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[715]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[716]) (./compiler-pkg.tex
Chapter 2.
[717] [718] [719] [720]) (./datasets-pkg.tex
Chapter 3.
[721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732]
[733] [734] [735] [736] [737]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749]
[750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761]
[762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773]
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797]
[798] [799] [800] [801] [802] [803]) (./grDevices-pkg.tex [804]
Chapter 4.
[805] [806] [807] [808] [809]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be
spec-i-fied as
[820] [821] [822] [823]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[824] [825]
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[826] [827] [828] [829] [830]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[831] [832] [833] [834] [835] [836] [837]
Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
,
[838]
Underfull \hbox (badness 10000) in paragraph at lines 2150--2152
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the
set-ting of
[839] [840] [841]
Underfull \hbox (badness 6758) in paragraph at lines 2329--2332
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
doc-u-men-ta-tion) are
[842] [843] [844] [845] [846] [847] [848] [849] [850] [851]
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
give a C in-te-ger for-mat such as
[869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880]
[881] [882]
Underfull \hbox (badness 1584) in paragraph at lines 4910--4912
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4914--4921
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
with sup-
[883] [884] [885] [886]
Underfull \hbox (badness 1377) in paragraph at lines 5220--5225
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently
al-lowed val-ues
[887]
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[888]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East
Asian lan-guages -- see
[889]
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[890]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[891]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[893] [894]
Underfull \hbox (badness 10000) in paragraph at lines 5700--5702
[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[895] [896]
Underfull \hbox (badness 1546) in paragraph at lines 5844--5852
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
[]\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
[897] [898] [899] [900] [901] [902] [903] [904]
Underfull \hbox (badness 10000) in paragraph at lines 6382--6385
[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[905] [906]
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[908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[919]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[920] [921] [922] [923] [924]
Underfull \hbox (badness 3780) in paragraph at lines 7630--7636
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[925] [926] [927] [928] [929] [930]) (./graphics-pkg.tex
Chapter 5.
[931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942]
[943] [944] [945] [946]
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[] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[]
[947] [948] [949] [950] [951] [952]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
[953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964]
[965] [966] [967] [968] [969]
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10
"n" []\T1/ptm/m/n/10 to sup-press and see also
[970]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are
to be used, see
[1007] [1008] [1009] [1010] [1011]
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
[1012] [1013]
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[1014 </build/reproducible-path/r-base-4.2.2.20221110/library/graphics/help/fig
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again>
\relax
l.5943 \aliasA{plot}{plot.default}{plot}
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[1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039]
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[][]
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ures//pch.pdf>] [1041]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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l.9018 \HeaderA{units}{Graphical Units}{units}
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(./grid-pkg.tex [1080]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
[]\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1175] [1176]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic
can be ob-tained by call-ing
[1311] [1312] [1313]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1356] [1357] [1358] [1359]) (./parallel-pkg.tex [1360]
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD,
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10
.Random.seed []\T1/ptm/m/n/10 when the
[1383] [1384] [1385]) (./splines-pkg.tex [1386]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1398] [1399] [1400] [1401] [1402]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1458]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing
method
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[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
[][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each
IWLS it-er-a-tion. Hence,
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these
de-fault to
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1616] [1617] [1618] [1619] [1620] [1621] [1622]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1633] [1634]
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =
[1635]
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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661]
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[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to
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[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
[1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672]
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[1684] [1685] [1686] [1687]
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1688] [1689]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) +
reltol) []\T1/ptm/m/n/10 at a step. De-faults to
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1706] [1707] [1708]
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[]\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[]
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[]\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[]
[1710] [1711] [1712] [1713] [1714] [1715] [1716]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725]
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
cook.lty, col = cook.col, text.col
[1726] [1727] [1728] [1729] [1730]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
of the con-fi-dence
[1731] [1732] [1733] [1734] [1735] [1736]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1737]
Underfull \hbox (badness 3919) in paragraph at lines 20853--20855
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
[1749] [1750] [1751] [1752] [1753] [1754] [1755]
Underfull \hbox (badness 10000) in paragraph at lines 21932--21938
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766]
[1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777]
[1778]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1779] [1780] [1781] [1782] [1783] [1784] [1785]
Underfull \hbox (badness 1436) in paragraph at lines 23714--23717
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1786]
Underfull \hbox (badness 10000) in paragraph at lines 23855--23856
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797]
[1798] [1799] [1800] [1801] [1802]
Underfull \hbox (badness 1824) in paragraph at lines 24827--24833
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24827--24833
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1803]
Underfull \hbox (badness 10000) in paragraph at lines 24848--24851
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1804]
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[1806] [1807] [1808] [1809] [1810] [1811] [1812]
Underfull \hbox (badness 2165) in paragraph at lines 25429--25434
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods.
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25653--25657
[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827]
[1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838]
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[1843]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1844] [1845] [1846] [1847]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27535--27535
[] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
== frac(log(2), e^{phi[2]})}),[]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1848]
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[]\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[]
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[] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[]
[1849] [1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852] [1853]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866]
Underfull \hbox (badness 4024) in paragraph at lines 28633--28636
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29239--29241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1877] [1878] [1879]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1886] [1887] [1888] [1889] [1890]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
resid-u-als, when
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[1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
Underfull \hbox (badness 3557) in paragraph at lines 31217--31221
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
[]\T1/zi4/m/n/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
Underfull \hbox (badness 1337) in paragraph at lines 32110--32114
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1925] [1926] [1927]
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[]\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno
t compute exact p-value with ties[]
[1928] [1929] [1930]
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[] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
= getOption("ts.eps"), ...)[]
[1931] [1932] [1933] [1934] [1935]) (./stats4-pkg.tex [1936]
Chapter 11.
[1937] [1938] [1939]
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[1942] [1943] [1944]
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\relax
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
[1945] [1946] [1947])
(./tcltk-pkg.tex [1948]
Chapter 12.
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1958] [1959] [1960] [1961] [1962]
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[1964] [1965] [1966] [1967] [1968] [1969] [1970]) (./tools-pkg.tex
Chapter 13.
[1971]
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(Font) using `T1/zi4/m/n' instead on input line 72.
[1972]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1973] [1974]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
[1975] [1976]
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1977]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988]
[1989]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a
pre-vi-ous
[1990]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1991] [1992] [1993] [1994] [1995]
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[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1996] [1997]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
Underfull \hbox (badness 1082) in paragraph at lines 1724--1726
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1998] [1999] [2000] [2001]
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<to be read again>
\relax
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
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l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
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[] \T1/zi4/m/n/9 r"(\newcommand{\Rlogo}{\if{html}{\figure{Rlogo.svg}{option
s: width=100 alt="R logo"}})",[]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
. Char-ac-ter string
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
The
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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2047]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-
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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
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\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.
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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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l.2711 ... the Clipboard in MS Windows}{clipboard}
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2115]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2116]
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS
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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-
Underfull \hbox (badness 1668) in paragraph at lines 4144--4160
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again>
\relax
l.5054 ...mat Unordered and Ordered Lists}{format}
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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(Font) using `T1/zi4/m/it' instead on input line 6502.
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2154]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are
listed in file
[2155] [2156] [2157]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2158]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion
to search. See
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Underfull \hbox (badness 3118) in paragraph at lines 6971--6973
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2164]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2165]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2166]
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2167]
Underfull \hbox (badness 10000) in paragraph at lines 7481--7486
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
given pack-age is found and can suc-cess-fully be read,
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Underfull \hbox (badness 1248) in paragraph at lines 9471--9475
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2200]
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
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Underfull \hbox (badness 3000) in paragraph at lines 10524--10529
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2225]
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 11169--11174
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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Underfull \hbox (badness 2469) in paragraph at lines 11663--11667
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11663--11667
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
= Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able
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[]\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[]
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10
is now taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2248]
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\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
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\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,
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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n
/10 which used
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup
. org /
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\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to
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[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
in-stall. See
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[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE
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(./fullrefman.aux)
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Transcript written on fullrefman.log.
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make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.2.2.20221110/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
touch make-indep-stamp
fakeroot debian/rules binary
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE
7432,7433c7432,7433
< Fisher's Exact Test for Count Data hybrid using asym.chisq. iff
< (exp=5, perc=80, Emin=1)
---
> Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5,
> perc=80, Emin=1)
14066,14067c14066
< 4-sample test for equality of proportions without continuity
< correction
---
> 4-sample test for equality of proportions without continuity correction
14096,14097c14095
< 4-sample test for equality of proportions without continuity
< correction
---
> 4-sample test for equality of proportions without continuity correction
Testing examples for package 'datasets'
comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/Examples'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running strict specific tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'eval-etc.R' ... OK
comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'structure.R' ... OK
comparing 'structure.Rout' to './structure.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running sloppy specific tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'complex.R' ... OK
comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
comparing 'lapack.Rout' to './lapack.Rout.save' ...246,250c246,250
< [1,] -0.4659 -0.04141 -0.8795 -8.440e-02 -0.02379
< [2,] -0.3931 0.15031 0.2249 -1.824e-05 -0.87881
< [3,] -0.3811 0.62205 0.2170 -5.570e-01 0.33239
< [4,] -0.5166 0.14296 0.1852 7.659e-01 0.30290
< [5,] -0.4652 -0.75386 0.3073 -3.097e-01 0.15780
---
> [1,] -0.4659 -0.04141 -0.8795 8.440e-02 0.02379
> [2,] -0.3931 0.15031 0.2249 1.824e-05 0.87881
> [3,] -0.3811 0.62205 0.2170 5.570e-01 -0.33239
> [4,] -0.5166 0.14296 0.1852 -7.659e-01 -0.30290
> [5,] -0.4652 -0.75386 0.3073 3.097e-01 -0.15780
254,258c254,258
< [1,] -0.4831 -0.3264 0.47567 0.1955 -0.6289
< [2,] -0.3627 0.3731 0.53450 -0.5920 0.3051
< [3,] -0.3995 0.4779 -0.59210 -0.2252 -0.4590
< [4,] -0.3983 -0.6985 -0.36298 -0.3821 0.2752
< [5,] -0.5628 0.1948 -0.07549 0.6439 0.4743
---
> [1,] -0.4831 -0.3264 0.47567 -0.1955 0.6289
> [2,] -0.3627 0.3731 0.53450 0.5920 -0.3051
> [3,] -0.3995 0.4779 -0.59210 0.2252 0.4590
> [4,] -0.3983 -0.6985 -0.36298 0.3821 -0.2752
> [5,] -0.5628 0.1948 -0.07549 -0.6439 -0.4743
266,270c266,270
< [1,] -0.4659 -0.04141 -0.8795 -8.440e-02 -0.02379
< [2,] -0.3931 0.15031 0.2249 -1.824e-05 -0.87881
< [3,] -0.3811 0.62205 0.2170 -5.570e-01 0.33239
< [4,] -0.5166 0.14296 0.1852 7.659e-01 0.30290
< [5,] -0.4652 -0.75386 0.3073 -3.097e-01 0.15780
---
> [1,] -0.4659 -0.04141 -0.8795 8.440e-02 0.02379
> [2,] -0.3931 0.15031 0.2249 1.824e-05 0.87881
> [3,] -0.3811 0.62205 0.2170 5.570e-01 -0.33239
> [4,] -0.5166 0.14296 0.1852 -7.659e-01 -0.30290
> [5,] -0.4652 -0.75386 0.3073 3.097e-01 -0.15780
277,278c277,278
< [4,] 0.1955 -0.5920 -0.2252 -0.3821 0.64390
< [5,] -0.6289 0.3051 -0.4590 0.2752 0.47430
---
> [4,] -0.1955 0.5920 0.2252 0.3821 -0.64390
> [5,] 0.6289 -0.3051 0.4590 -0.2752 -0.47430
OK
running code in 'datasets.R' ... OK
comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
checking Sys.timezone ...
make[5]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'timezone.R' ... OK
make[5]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running regression tests ...
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'array-subset.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-1d.R' ... OK
running code in 'reg-tests-2.R' ... OK
comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'p-qbeta-strict-tst.R' ... OK
running code in 'd-p-q-r-tst-2.R' ... OK
running code in 'r-strict-tst.R' ... OK
running code in 'reg-IO.R' ... OK
comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
running code in 'reg-S4-examples.R' ... OK
running code in 'reg-BLAS.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of plotting Latin-1
expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... FAILED
running code in 'reg-S4.R' ... OK
comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ...611c611
< skipping tests requiring the Matrix package
---
> <sparse>[ <logic> ]: .M.sub.i.logical() maybe inefficient
1257c1257,1280
< skipping tests requiring the Matrix package
---
> > setClass("Z", representation(zz = "list"))
> > setClass("C", contains = c("Z", "dgCMatrix"))
> > setClass("C2", contains = "C")
> > setClass("C3", contains = "C2")
> > m <- matrix(c(0, 0, 2:0), 3, 5, dimnames = list(NULL, NULL))
> > m2 <- matrix(c(0, 0, 2:0), 3, 5)
> > (mC <- as(m, "dgCMatrix"))
> 3 x 5 sparse Matrix of class "dgCMatrix"
>
> [1,] . 1 . . 2
> [2,] . . 2 . 1
> [3,] 2 . 1 . .
> > (cc <- as(mC, "C"))
> 3 x 5 sparse Matrix of class "C"
>
> [1,] . 1 . . 2
> [2,] . . 2 . 1
> [3,] 2 . 1 . .
> > c2 <- as(mC, "C2")
> > c3 <- as(mC, "C3")
> > stopifnot(identical(capture.output(c2), sub("C3", "C2", capture.output(c3))),
> + identical(as(cc, "matrix"), m2), identical(as(c2, "matrix"), m2), identical(as(c3,
> + "matrix"), m2))
> > invisible(lapply(c("Z", "C", "C2", "C3"), removeClass))
1305c1328,1336
< skipping tests requiring the Matrix package
---
> > sci <- names(getClass("integer")@contains)
> > setClass("MyClass")
> > ncl <- "NumOrMyClass"
> > setClassUnion(ncl, c("numeric", "MyClass"))
> > nsci <- names(getClass("integer")@contains)
> > stopifnot(sci %in% nsci, identical(setdiff(nsci, sci), ncl))
> > setClassUnion("dMatrixOrMatrix", members = c("dMatrix", "matrix"))
> > stopifnot("dMatrixOrMatrix" %in% names(getClass("dgCMatrix")@contains))
> > invisible(lapply(c("NumOrMyClass", "MyClass", "dMatrixOrMatrix"), removeClass))
OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of Internet functions
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'internet.R' ... OK
comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,145
< Warning message:
< In nsl("cran.r-project.org") :
< nsl() was unable to resolve host 'cran.r-project.org'
---
> >
> > # test do_download (and "record" #{packages}):
> > ap <- available.packages(contrib.url("http://cran.r-project.org"))
> > ## IGNORE_RDIFF_END
> >
> > # test url connections on http
> > zz <- url("http://cran.r-project.org/")
> > readLines(zz)
> [1] "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Frameset//EN\" \"http://www.w3.org/TR/html4/frameset.dtd\">"
> [2] "<html>"
> [3] "<head>"
> [4] "<title>The Comprehensive R Archive Network</title>"
> [5] "<META HTTP-EQUIV=\"content-type\" CONTENT=\"text/html; charset=utf-8\">"
> [6] "<link rel=\"icon\" href=\"favicon.ico\" type=\"image/x-icon\">"
> [7] "<link rel=\"shortcut icon\" href=\"favicon.ico\" type=\"image/x-icon\">"
> [8] "<link rel=\"stylesheet\" type=\"text/css\" href=\"R.css\">"
> [9] "</head>"
> [10] ""
> [11] "<FRAMESET cols=\"1*, 4*\" style=\"border: none;\">"
> [12] "<FRAMESET rows=\"120, 1*\">"
> [13] "<FRAME src=\"logo.html\" name=\"logo\" frameborder=0>"
> [14] "<FRAME src=\"navbar.html\" name=\"contents\" frameborder=0>"
> [15] "</FRAMESET>"
> [16] "<FRAME src=\"banner.shtml\" name=\"banner\" frameborder=0>"
> [17] "<noframes>"
> [18] "<h1>The Comprehensive R Archive Network</h1>"
> [19] ""
> [20] "Your browser seems not to support frames,"
> [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN."
> [22] "</noframes>"
> [23] "</FRAMESET>"
> > close(zz)
> >
> > # and via read.table
> >
> > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
> V1 V2 V3 V4 V5
> 1 1 307 930 36.58 0
> 2 2 307 940 36.73 0
> 3 3 307 950 36.93 0
> 4 4 307 1000 37.15 0
> 5 5 307 1010 37.23 0
> 6 6 307 1020 37.24 0
> 7 7 307 1030 37.24 0
> 8 8 307 1040 36.90 0
> 9 9 307 1050 36.95 0
> 10 10 307 1100 36.89 0
> 11 11 307 1110 36.95 0
> 12 12 307 1120 37.00 0
> 13 13 307 1130 36.90 0
> 14 14 307 1140 36.99 0
> 15 15 307 1150 36.99 0
> 16 16 307 1200 37.01 0
> 17 17 307 1210 37.04 0
> 18 18 307 1220 37.04 0
> 19 19 307 1230 37.14 0
> 20 20 307 1240 37.07 0
> 21 21 307 1250 36.98 0
> 22 22 307 1300 37.01 0
> 23 23 307 1310 36.97 0
> 24 24 307 1320 36.97 0
> 25 25 307 1330 37.12 0
> 26 26 307 1340 37.13 0
> 27 27 307 1350 37.14 0
> 28 28 307 1400 37.15 0
> 29 29 307 1410 37.17 0
> 30 30 307 1420 37.12 0
> 31 31 307 1430 37.12 0
> 32 32 307 1440 37.17 0
> 33 33 307 1450 37.28 0
> 34 34 307 1500 37.28 0
> 35 35 307 1510 37.44 0
> 36 36 307 1520 37.51 0
> 37 37 307 1530 37.64 0
> 38 38 307 1540 37.51 0
> 39 39 307 1550 37.98 1
> 40 40 307 1600 38.02 1
> 41 41 307 1610 38.00 1
> 42 42 307 1620 38.24 1
> 43 43 307 1630 38.10 1
> 44 44 307 1640 38.24 1
> 45 45 307 1650 38.11 1
> 46 46 307 1700 38.02 1
> 47 47 307 1710 38.11 1
> 48 48 307 1720 38.01 1
> 49 49 307 1730 37.91 1
> 50 50 307 1740 37.96 1
> 51 51 307 1750 38.03 1
> 52 52 307 1800 38.17 1
> 53 53 307 1810 38.19 1
> 54 54 307 1820 38.18 1
> 55 55 307 1830 38.15 1
> 56 56 307 1840 38.04 1
> 57 57 307 1850 37.96 1
> 58 58 307 1900 37.84 1
> 59 59 307 1910 37.83 1
> 60 60 307 1920 37.84 1
> 61 61 307 1930 37.74 1
> 62 62 307 1940 37.76 1
> 63 63 307 1950 37.76 1
> 64 64 307 2000 37.64 1
> 65 65 307 2010 37.63 1
> 66 66 307 2020 38.06 1
> 67 67 307 2030 38.19 1
> 68 68 307 2040 38.35 1
> 69 69 307 2050 38.25 1
> 70 70 307 2100 37.86 1
> 71 71 307 2110 37.95 1
> 72 72 307 2120 37.95 1
> 73 73 307 2130 37.76 1
> 74 74 307 2140 37.60 1
> 75 75 307 2150 37.89 1
> 76 76 307 2200 37.86 1
> 77 77 307 2210 37.71 1
> 78 78 307 2220 37.78 1
> 79 79 307 2230 37.82 1
> 80 80 307 2240 37.76 1
> 81 81 307 2250 37.81 1
> 82 82 307 2300 37.84 1
> 83 83 307 2310 38.01 1
> 84 84 307 2320 38.10 1
> 85 85 307 2330 38.15 1
> 86 86 307 2340 37.92 1
> 87 87 307 2350 37.64 1
> 88 88 308 0 37.70 1
> 89 89 308 10 37.46 1
> 90 90 308 20 37.41 1
> 91 91 308 30 37.46 1
> 92 92 308 40 37.56 1
> 93 93 308 50 37.55 1
> 94 94 308 100 37.75 1
> 95 95 308 110 37.76 1
> 96 96 308 120 37.73 1
> 97 97 308 130 37.77 1
> 98 98 308 140 38.01 1
> 99 99 308 150 38.04 1
> 100 100 308 200 38.07 1
> >
OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of date-time printing
expect platform-specific differences
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'datetime2.R' ... OK
comparing 'datetime2.Rout' to './datetime2.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of documentation examples
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'R-intro.R' ... OK
comparing 'R-intro.Rout' to './R-intro.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
gcc -I"/build/reproducible-path/r-base-4.2.2.20221110/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R-exts.c -o R-exts.o
gcc -shared -L/build/reproducible-path/r-base-4.2.2.20221110/lib -Wl,-z,relro -o R-exts.so R-exts.o -L/build/reproducible-path/r-base-4.2.2.20221110/lib -lR
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'R-exts.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of consistency of as/is.*
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
creating 'isas-tests.R'
running code in 'isas-tests.R' ... OK
comparing 'isas-tests.Rout' to './isas-tests.Rout.save' ... OK
rm isas-tests.R
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of random deviate generation
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'p-r-random-tests.R' ... OK
comparing 'p-r-random-tests.Rout' to './p-r-random-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running demos from base and stats
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'demos.R' ... OK
comparing 'demos.Rout' to './demos.Rout.save' ... OK
running code in 'demos2.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of primitives
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'primitives.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running regexp regression tests
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of translation
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'reg-translation.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running more Internet and socket tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'internet2.R' ... OK
running code in 'libcurl.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests of CRAN tools
(can be slow unless mirror is local)
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'CRANtools.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running tests to possibly trigger segfaults
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
creating 'no-segfault.R'
running code in 'no-segfault.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
testing building standalone Rmath
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
check output can be found in src/nmath/standalone/check.log
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running unit tests for the condition system
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
running code in 'conditions.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
building NEWS database [for news() example]
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[4]: 'NEWS.rds' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
-rw-r--r-- 1 root root 190768 Jan 26 01:49 NEWS.rds
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
checking package 'base'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/base.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'base' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'round', 'date', 'chron', 'nnet' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/base.Rcheck/00check.log'
for details.
checking package 'tools'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/tools.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tools' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'mathjaxr' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'QC.R'
Running 'Rd.R'
Running 'Rd2HTML.R'
Running 'S3.R'
Running 'undoc.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/tools.Rcheck/00check.log'
for details.
checking package 'utils'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/utils.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'utils' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'knitr', 'nlme', 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'Sweave-tst.R'
Running 'charclass.R'
ERROR
Running the tests in 'tests/charclass.R' failed.
Last 13 lines of output:
+ charClass(testCodepoints[["ASCII"]], "digit")))
+ }
> {
+ stopifnot(all.equal(
+ c(FALSE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, FALSE, TRUE),
+ charClass(testCodepoints[["ASCII"]], "alnum")))
+ }
> {
+ stopifnot(all.equal(
+ c(TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE),
+ charClass(testCodepoints[["Cyrillic"]], "alpha")))
+ }
Error: c(TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE) and charClass(testCodepoints[["Cyrillic"]], "alpha") are not equal:
4 element mismatches
Execution halted
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
'Sweave.Rnw'... OK
OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/utils.Rcheck/00check.log'
for details.
checking package 'grDevices'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/grDevices.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grDevices' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'KernSmooth', 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'convertColor-tests.R'
Running 'ps-tests.R'
Comparing 'ps-tests.Rout' to 'ps-tests.Rout.save' ... OK
Running 'saved-recordPlot.R'
Running 'xfig-tests.R'
Comparing 'xfig-tests.Rout' to 'xfig-tests.Rout.save' ... OK
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/grDevices.Rcheck/00check.log'
for details.
checking package 'graphics'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/graphics.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'graphics' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'vcd', 'lattice', 'MASS', 'KernSmooth' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/graphics.Rcheck/00check.log'
for details.
checking package 'stats'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/stats.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'multcomp', 'coin', 'nlme', 'cluster', 'MASS', 'rpart', 'Matrix', 'pcaPP', 'Kendall', 'SuppDists', 'pspearman', 'robustbase', 'survival' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'NLSstClosest.R'
Running 'arimaML.R'
Running 'bandwidth.R'
Comparing 'bandwidth.Rout' to 'bandwidth.Rout.save' ... OK
Running 'cmdscale.R'
Running 'drop1-polr.R'
Running 'glm-etc.R'
Running 'glm.R'
Comparing 'glm.Rout' to 'glm.Rout.save' ... OK
Running 'ig_glm.R'
Running 'ks-test.R'
Comparing 'ks-test.Rout' to 'ks-test.Rout.save' ... OK
Running 'nafns.R'
Running 'nlm.R'
Running 'nls.R'
Comparing 'nls.Rout' to 'nls.Rout.save' ...81c81,85
< skipping tests requiring the MASS package
---
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 1.00875 1.037847
> b 0.84138 0.914645
> c NA 0.042807
266a271,279
> Waiting for profiling to be done...
> 2.5% 97.5%
> Asym 2.14936 2.5724
> xmid 1.28535 1.6966
> scal 0.97526 1.1068
> Waiting for profiling to be done...
> 2.5% 97.5%
> xmid 1.2866 1.6949
> scal 0.9757 1.1063
295a309,311
> Waiting for profiling to be done...
> 2.5% 97.5%
> 0.68704 0.70281
303a320,322
> Waiting for profiling to be done...
> 2.5% 97.5%
> 0.68704 0.70281
309a329,332
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
317a341,344
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
323a351,355
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 0.35006 0.66057
> b 0.45107 0.91473
> logc -0.64627 0.40946
331a364,368
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 0.35006 0.66057
> b 0.45107 0.91473
> logc -0.64627 0.40946
338a376,380
> 2.5% 97.5%
> 0.70019 0.74767
> 2.5% 97.5%
> b 0.45105 0.91471
> logc -0.64625 0.40933
408a451,453
> 2.5% 97.5%
> a 0.96 5.20
> b NA 1.07
459a505,508
> Waiting for profiling to be done...
> 2.5% 97.5%
> a 0.907 NA
> b NA 0.611
Running 'offsets.R'
Running 'ppr.R'
Running 'simulate.R'
Comparing 'simulate.Rout' to 'simulate.Rout.save' ...366c366,399
< skipping tests requiring the MASS package
---
> >
> > ## gamma fit, from example(glm)
> > clotting <- data.frame(u = c(5,10,15,20,30,40,60,80,100),
> + lot1 = c(118,58,42,35,27,25,21,19,18))
> > fit7 <- glm(lot1 ~ log(u), data = clotting, family = Gamma)
> > coef(summary(fit7))
> Estimate Std. Error t value Pr(>|t|)
> (Intercept) -0.016554 0.00092755 -17.847 4.2791e-07
> log(u) 0.015343 0.00041496 36.975 2.7512e-09
> > set.seed(1)
> > ( ys <- simulate(fit7, nsim = 3) )
> sim_1 sim_2 sim_3
> 1 119.451 118.552 123.140
> 2 56.310 51.798 48.747
> 3 42.193 39.456 40.843
> 4 34.581 33.905 35.580
> 5 26.208 26.971 27.210
> 6 25.476 25.840 24.437
> 7 22.287 22.151 21.375
> 8 20.206 20.503 19.626
> 9 18.224 19.094 17.952
> > for(i in seq_len(3))
> + print(coef(summary(update(fit7, ys[, i] ~ .))))
> Estimate Std. Error t value Pr(>|t|)
> (Intercept) -0.016008 0.00077887 -20.553 1.6197e-07
> log(u) 0.015044 0.00034611 43.465 8.9084e-10
> Estimate Std. Error t value Pr(>|t|)
> (Intercept) -0.015483 0.00050102 -30.903 9.5910e-09
> log(u) 0.014935 0.00021999 67.889 3.9547e-11
> Estimate Std. Error t value Pr(>|t|)
> (Intercept) -0.016850 0.00075120 -22.431 8.8554e-08
> log(u) 0.015569 0.00033659 46.256 5.7704e-10
> >
> >
Running 'smooth.spline.R'
Running 'table-margins.R'
Running 'ts-tests.R'
OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
'reshape.Rnw'... OK
OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/stats.Rcheck/00check.log'
for details.
checking package 'datasets'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/datasets.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'datasets' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
checking package 'methods'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/methods.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'methods' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'S3.R'
Running 'basicRefClass.R'
Running 'duplicateClass.R'
Running 'envRefClass.R'
Running 'fieldAssignments.R'
Running 'mixinInitialize.R'
Running 'namesAndSlots.R'
Running 'nextWithDots.R'
Running 'refClassExample.R'
Running 'testConditionalIs.R'
Running 'testGroupGeneric.R'
Running 'testIs.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/methods.Rcheck/00check.log'
for details.
checking package 'grid'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/grid.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grid' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'lattice' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'bugs.R'
Running 'clippaths.R'
Running 'compositing.R'
Running 'coords.R'
Running 'grep.R'
Comparing 'grep.Rout' to 'grep.Rout.save' ... OK
Running 'groups.R'
Running 'masks.R'
Running 'nesting.R'
Running 'paths.R'
Running 'patterns.R'
Running 'reg.R'
Running 'testls.R'
Comparing 'testls.Rout' to 'testls.Rout.save' ... OK
Running 'units.R'
OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
'displaylist.Rnw'... OK
'frame.Rnw'... OK
'grid.Rnw'... OK
'grobs.Rnw'... OK
'interactive.Rnw'... OK
'locndimn.Rnw'... OK
'moveline.Rnw'... OK
'nonfinite.Rnw'... OK
'plotexample.Rnw'... OK
'rotated.Rnw'... OK
'saveload.Rnw'... OK
'sharing.Rnw'... OK
'viewports.Rnw'... OK
OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/grid.Rcheck/00check.log'
for details.
checking package 'splines'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/splines.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'splines' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'sparse-tst.R'
Running 'spline-tst.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'/build/reproducible-path/r-base-4.2.2.20221110/tests/splines.Rcheck/00check.log'
for details.
checking package 'stats4'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/stats4.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats4' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'confint.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: OK
checking package 'tcltk'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/tcltk.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tcltk' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
checking package 'compiler'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/compiler.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'compiler' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'assign.R'
Running 'basics.R'
Running 'const.R'
Running 'curexpr.R'
Running 'envir.R'
Running 'jit.R'
Running 'loop.R'
Running 'srcref.R'
Running 'switch.R'
Running 'vischk.R'
OK
* checking PDF version of manual ... OK
* DONE
Status: OK
checking package 'parallel'
* using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/parallel.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'parallel' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
Running 'Master.R'
Running 'RSeed.R'
OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
'parallel.Rnw'... OK
NONE
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
Recommended packages are not installed so cannot be tested
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
touch check-stamp
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core
/usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core install
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
installing doc ...
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
installing doc/html ...
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
installing doc/manual ...
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
installing share ...
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/blas'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tre'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tzone'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/tzone'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/xdr'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra/intl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
-o Rscript ./Rscript.c
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/library
installing packages ...
building HTML index ...
make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/tests'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
(cd src/unix; \
rm -vf Rscript /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/Rscript; \
/usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \
FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -D_REENTRANT" \
CC=gcc \
CXX=g++ \
F77=gfortran \
RHOME=/usr/lib/R \
DESTDIR=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core \
install-Rscript )
removed 'Rscript'
removed '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110/src/unix=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
-o Rscript ./Rscript.c
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/unix'
#ls -ltr /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/
#strings src/unix/Rscript
cp -vax src/unix/Rscript /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/
#strings /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone; \
/usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core install )
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/include'
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/src/nmath/standalone'
chmod a+x /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/share/sh/echo.sh
rm -v /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/COPYING
removed '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/COPYING'
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/; \
ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc/COPYING
removed '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc; \
ln -s ../../../share/common-licenses/GPL-2 COPYING)
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/texmf/tex/latex && \
ln -s ../../../R/share/texmf R)
dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles --sourcedir=debian/r-base-core -pr-base-html
make prefix=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr \
rdocdir=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/R/doc \
install-pdf
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
installing R manuals in PDF format ...
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
make prefix=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr \
infodir=/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info install-info
make[1]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110'
make[2]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
mkdir -p -- /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110'
dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html
gunzip -9v /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/*.gz
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.2% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-FAQ.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.3% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-admin.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-data.info.gz: 70.9% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-data.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.8% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-1
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 68.1% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-2
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 77.8% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info-3
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.3% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-exts.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.4% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-intro.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.7% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-ints.info
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.9% -- replaced with /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info
rm -vf /build/reproducible-path/r-base-4.2.2.20221110/debian/r-doc-info/usr/share/info/dir \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-doc-info/usr/share/info/dir.old
removed '/build/reproducible-path/r-base-4.2.2.20221110/debian/r-doc-info/usr/share/info/dir'
touch install-indep-stamp
dh_installdirs -pr-mathlib usr/include usr/lib \
usr/share/lintian/overrides \
usr/lib/pkgconfig
dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-mathlib/usr/lib; \
ls -l ; \
mv -v libRmath.so libRmath.so.1.0.0; \
ln -sv libRmath.so.1.0.0 libRmath.so.1; \
ln -sv libRmath.so.1 libRmath.so)
total 2328
-rw-r--r-- 1 root root 1597100 Jan 26 02:17 libRmath.a
-rwxr-xr-x 1 root root 783048 Jan 26 02:17 libRmath.so
drwxr-xr-x 2 root root 60 Jan 26 02:18 pkgconfig
renamed 'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/etc/R
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/etc; \
mv Makeconf repositories ldpaths ../../../../etc/R/; \
mv Renviron Renviron.ucf; \
ln -s /etc/R/Makeconf .; \
ln -s /etc/R/Renviron .; \
ln -s /etc/R/Renviron.site .; \
ln -s /etc/R/Rprofile.site .; \
ln -s /etc/R/ldpaths .; \
ln -s /etc/R/repositories . )
dh_bash-completion
# edd 12 Jan 2016 new location
#install -m 0644 debian/R.bash-completion \
# debian/r-base-core/usr/share/bash-completion/completions/R
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/; \
ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png \
debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/Rlogo.svg \
debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg
install -m 0644 debian/icon-class-patch/R.desktop \
debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
debian/README.Atlas \
debian/README.mathlib
dh_installdocs -pr-mathlib doc/NEWS.* README \
debian/README.mathlib
dh_installexamples -pr-mathlib src/nmath/standalone/test.c
#dh_installmenu -a
# (cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644 debian/r-base-core.lintian \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644 debian/r-recommended.lintian \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644 debian/r-mathlib.lintian \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a -k doc/NEWS
dh_strip -a
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.2.2.20221110-2_amd64.deb'.
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.2.2.20221110-2_amd64.deb'.
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.2.2.20221110-2_amd64.deb'.
dpkg-deb: building package 'r-base-core' in '../r-base-core_4.2.2.20221110-2_amd64.deb'.
*** binary-indep ***
dh_testdir -i
dh_testroot -i
dh_link -i
dh_installdocs -i
dh_installdocs -v -pr-doc-html
install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright
install -m0755 -d debian/r-doc-html/usr/share/doc-base/
install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro
install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions
install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq
install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints
install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin
install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language
install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data
dh_installchangelogs -i
dh_installdirs -pr-base-dev usr/share/R/debian
install -p -m 0755 debian/r-cran.mk \
/build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-dev/usr/share/R/debian
dh_compress -i
dh_fixperms -i
dh_installdeb -i
dh_gencontrol -i
dh_md5sums -i
dh_builddeb -i
dpkg-deb: building package 'r-base' in '../r-base_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-base-html' in '../r-base-html_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.2.2.20221110-2_all.deb'.
dpkg-deb: building package 'r-recommended' in '../r-recommended_4.2.2.20221110-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../r-base_4.2.2.20221110-2_amd64.buildinfo
dpkg-genchanges --build=binary -O../r-base_4.2.2.20221110-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/478551 and its subdirectories
I: Current time: Fri Jan 26 02:19:21 -12 2024
I: pbuilder-time-stamp: 1706278761
Fri Jan 26 14:19:22 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Fri Jan 26 14:19:22 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Fri Jan 26 16:29:38 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Fri Jan 26 16:29:39 UTC 2024 I: r-base_4.2.2.20221110-2_amd64.changes:
Format: 1.8
Date: Fri, 20 Jan 2023 10:49:27 -0600
Source: r-base
Binary: r-base r-base-core r-base-core-dbgsym r-base-dev r-base-html r-doc-html r-doc-info r-doc-pdf r-mathlib r-mathlib-dbgsym r-recommended
Architecture: amd64 all
Version: 4.2.2.20221110-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
r-base - GNU R statistical computation and graphics system
r-base-core - GNU R core of statistical computation and graphics system
r-base-dev - GNU R installation of auxiliary GNU R packages
r-base-html - GNU R html docs for statistical computing system functions
r-doc-html - GNU R html manuals for statistical computing system
r-doc-info - GNU R info manuals statistical computing system
r-doc-pdf - GNU R pdf manuals for statistical computing system
r-mathlib - GNU R standalone mathematics library
r-recommended - GNU R collection of recommended packages [metapackage]
Changes:
r-base (4.2.2.20221110-2) unstable; urgency=medium
.
[ Dirk Eddelbuettel ]
* debian/Renviron-R_LIBS.patch: Modified following helpful email discussion with Kurt Hornik
* debian/control: Remove Depends: on perl in light of change by Giole
.
[ Adrian Bunk ]
* debian/rukes: Set -ffloat-store on i386
.
[ Giole Barabucci ]
* debian/r-base-core.postinst: Simplify one perl substitution call to sed
Checksums-Sha1:
eb2dcbac7a1cafd87e0948316286794647bdaae2 6745628 r-base-core-dbgsym_4.2.2.20221110-2_amd64.deb
99b36b3d489619e55db47dcad271300a07603f7f 26175876 r-base-core_4.2.2.20221110-2_amd64.deb
a1a4431e0ee1f38829b13045f4c849592bc712fb 4492 r-base-dev_4.2.2.20221110-2_all.deb
0bb949fcd079de6db2095c7e395627939db5118d 60984 r-base-html_4.2.2.20221110-2_all.deb
0f1250f5342d1c43c50d2738ffbbdb54beaf7dc4 13248 r-base_4.2.2.20221110-2_all.deb
575aa55470d4abd05332ac518279ceda38af3821 17394 r-base_4.2.2.20221110-2_amd64.buildinfo
fecfeba9a2efb61380f59f9cdb6613d5d0d4b7a2 554704 r-doc-html_4.2.2.20221110-2_all.deb
3bdb3673c05f5518c3826bfaca3e9a02c4df2a4d 628496 r-doc-info_4.2.2.20221110-2_all.deb
c22a92f080d204b3547e45e8a2dd72b5e94916e6 9847580 r-doc-pdf_4.2.2.20221110-2_all.deb
5b44cc8647acb675e7cc6ed7f58387f00738bd4b 228444 r-mathlib-dbgsym_4.2.2.20221110-2_amd64.deb
8e6c9b8895d6d91a727c2f7639720135afc6e0e1 2291176 r-mathlib_4.2.2.20221110-2_amd64.deb
e0be849a020937e3eb948d241cd0ce6381356f27 2780 r-recommended_4.2.2.20221110-2_all.deb
Checksums-Sha256:
988beae5255d8b0b60b2d9d6019b242dad1d71ce6d3ac5d3dec919790d279570 6745628 r-base-core-dbgsym_4.2.2.20221110-2_amd64.deb
59a0ad56d7509f4b20df7c51865d80491501fb93d0827add5eda40a6c215a3f2 26175876 r-base-core_4.2.2.20221110-2_amd64.deb
0888d55ca72be274ee37e2b8a23ae3b4cdcaa884f3c9f29ae1a3419832525e8a 4492 r-base-dev_4.2.2.20221110-2_all.deb
a65f4c5640034e9276f514071900d3df67e61256441626a33b569b497a0e7f96 60984 r-base-html_4.2.2.20221110-2_all.deb
05a0e99cf9ea8d6c58738073c618e7ecc711bb9db01f1597bbb2ffbb9a7f94b0 13248 r-base_4.2.2.20221110-2_all.deb
6846bfe83133f434827800684fd5f50bd690f3d139233462051f8aabe37ca781 17394 r-base_4.2.2.20221110-2_amd64.buildinfo
2c615dd386993a440b80fd4e9060318386e31fbe47f5be65f295f5fb34002c5c 554704 r-doc-html_4.2.2.20221110-2_all.deb
622344f981dc6f4fe755311cffe6d6ce7e001bfd7205dbb79e7f8646db91d5d2 628496 r-doc-info_4.2.2.20221110-2_all.deb
9de28d1fb6a2537060b3f7cc0ac04f0630fa71e0151bcf638861958d04e74db6 9847580 r-doc-pdf_4.2.2.20221110-2_all.deb
062b75a6a029816b158ef8707142ec25dd0fb5eaef7418a93d14c5434f8c2faa 228444 r-mathlib-dbgsym_4.2.2.20221110-2_amd64.deb
d1836b6c23a94dba0e8f9ddae45cc457ddfa56f3b4ea0bf61d0feab829769d8b 2291176 r-mathlib_4.2.2.20221110-2_amd64.deb
b910cd8d4372ba08f3eaa83403f8a8870d567954b685d6b9e04fe4b36d70ac0e 2780 r-recommended_4.2.2.20221110-2_all.deb
Files:
a1138e8d488e120315d291a7d858d751 6745628 debug optional r-base-core-dbgsym_4.2.2.20221110-2_amd64.deb
fcdded503fa25a9cd70c221ef52c7109 26175876 gnu-r optional r-base-core_4.2.2.20221110-2_amd64.deb
810517a5d54753ada8f4a1382006b109 4492 gnu-r optional r-base-dev_4.2.2.20221110-2_all.deb
0b7f7cb1e6cf2fe146a117d5633dac35 60984 doc optional r-base-html_4.2.2.20221110-2_all.deb
721969941987a3176562c99663f1a43f 13248 gnu-r optional r-base_4.2.2.20221110-2_all.deb
63b23728cd0546fe25c47670e831f48c 17394 gnu-r optional r-base_4.2.2.20221110-2_amd64.buildinfo
cef672108f7fb456d98f5f37cef7cb63 554704 doc optional r-doc-html_4.2.2.20221110-2_all.deb
e5fa83f05ae07dbeb78cbb182c9d9705 628496 doc optional r-doc-info_4.2.2.20221110-2_all.deb
65b296da23f34a694e233f8eed9ed740 9847580 doc optional r-doc-pdf_4.2.2.20221110-2_all.deb
576b73b9b893cfd632b9051dd856635f 228444 debug optional r-mathlib-dbgsym_4.2.2.20221110-2_amd64.deb
078431dfad0d2e28d574269493ebaffa 2291176 gnu-r optional r-mathlib_4.2.2.20221110-2_amd64.deb
0027c713b58d419771b79d003ad6e0fe 2780 gnu-r optional r-recommended_4.2.2.20221110-2_all.deb
Fri Jan 26 16:29:45 UTC 2024 I: diffoscope 254 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/r-base_4.2.2.20221110-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/r-base_4.2.2.20221110-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/r-base_4.2.2.20221110-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/b1/r-base_4.2.2.20221110-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.AQRjbPCD/b2/r-base_4.2.2.20221110-2_amd64.changes
## close_archive (total time: 0.000s)
0.000s 36 calls diffoscope.comparators.gzip.GzipContainer
0.000s 10 calls diffoscope.comparators.xz.XzContainer
0.000s 2 calls diffoscope.comparators.deb.DebContainer
0.000s 8 calls diffoscope.comparators.tar.TarContainer
0.000s 2 calls diffoscope.comparators.deb.DebTarContainer
## command (total time: 23.414s)
7.731s 49 calls diff
5.865s 12 calls xz
5.822s 33 calls pdftotext
2.076s 10 calls xxd
1.656s 198 calls Rscript
0.096s 36 calls gzip
0.081s 9 calls cmp
0.081s 9 calls cmp (external)
0.007s 99 calls cmp (internal)
## compare_files (cumulative) (total time: 1052.490s)
210.332s 1 call abc.DotChangesFile
210.214s 2 calls abc.DebFile
209.976s 4 calls abc.XzFile
203.903s 2 calls abc.DebDataTarFile
176.698s 3 calls abc.PdfFile
16.391s 18 calls abc.GzipFile
16.089s 16 calls abc.RdsFile
8.050s 2 calls abc.RdbFile
0.627s 18 calls abc.TextFile
0.150s 2 calls abc.TarFile
0.059s 2 calls abc.Md5sumsFile
## container_extract (total time: 6.814s)
5.865s 12 calls diffoscope.comparators.xz.XzContainer
0.665s 2172 calls diffoscope.comparators.deb.DebTarContainer
0.176s 16 calls diffoscope.comparators.deb.DebContainer
0.097s 36 calls diffoscope.comparators.gzip.GzipContainer
0.009s 24 calls diffoscope.comparators.tar.TarContainer
## diff (total time: 0.568s)
0.568s 272 calls linediff
## has_same_content_as (total time: 0.097s)
0.037s 2 calls abc.DebDataTarFile
0.026s 11 calls abc.DebFile
0.021s 3 calls abc.PdfFile
0.004s 32 calls abc.TextFile
0.002s 16 calls abc.RdsFile
0.002s 21 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.002s 18 calls abc.GzipFile
0.001s 4 calls abc.Md5sumsFile
0.000s 4 calls abc.XzFile
0.000s 2 calls abc.TarFile
0.000s 2 calls abc.RdbFile
0.000s 1 call abc.DotChangesFile
## main (total time: 217.049s)
217.017s 2 calls outputs
0.032s 1 call cleanup
## open_archive (total time: 0.000s)
0.000s 36 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.xz.XzContainer
0.000s 8 calls diffoscope.comparators.tar.TarContainer
0.000s 4 calls diffoscope.comparators.deb.DebTarContainer
0.000s 4 calls diffoscope.comparators.deb.DebContainer
## output (total time: 2.038s)
1.793s 1 call html
0.154s 1 call text
0.091s 1 call json
## recognizes (total time: 2.751s)
2.116s 12 calls diffoscope.comparators.binary.FilesystemFile
0.387s 4324 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.187s 2408 calls diffoscope.comparators.utils.archive.ArchiveMember
0.060s 594 calls diffoscope.comparators.debian.DebControlMember
## specialize (total time: 0.651s)
0.651s 116 calls specialize
Fri Jan 26 16:33:24 UTC 2024 E: r-base failed to build reproducibly in bookworm on amd64.
Fri Jan 26 16:33:24 UTC 2024 E: diffoscope 254 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/amd64/r-base_4.2.2.20221110-2.diffoscope.html
Fri Jan 26 16:33:33 UTC 2024 I: Submitting .buildinfo files to external archives:
Fri Jan 26 16:33:33 UTC 2024 I: Submitting 20K b1/r-base_4.2.2.20221110-2_amd64.buildinfo.asc
Fri Jan 26 16:33:35 UTC 2024 I: Submitting 20K b2/r-base_4.2.2.20221110-2_amd64.buildinfo.asc
Fri Jan 26 16:33:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Jan 26 16:33:35 UTC 2024 I: Done submitting .buildinfo files.
Fri Jan 26 16:33:35 UTC 2024 I: Removing signed r-base_4.2.2.20221110-2_amd64.buildinfo.asc files:
removed './b1/r-base_4.2.2.20221110-2_amd64.buildinfo.asc'
removed './b2/r-base_4.2.2.20221110-2_amd64.buildinfo.asc'