Mon Jan 8 20:41:30 UTC 2024 I: starting to build twopaco/bookworm/amd64 on jenkins on '2024-01-08 20:41'
Mon Jan 8 20:41:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/12563/console.log
Mon Jan 8 20:41:30 UTC 2024 I: Downloading source for bookworm/twopaco=1.0.0+dfsg-1
--2024-01-08 20:41:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/twopaco/twopaco_1.0.0%2bdfsg-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2022 (2.0K) [text/prs.lines.tag]
Saving to: ‘twopaco_1.0.0+dfsg-1.dsc’
0K . 100% 319M=0s
2024-01-08 20:41:30 (319 MB/s) - ‘twopaco_1.0.0+dfsg-1.dsc’ saved [2022/2022]
Mon Jan 8 20:41:30 UTC 2024 I: twopaco_1.0.0+dfsg-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: twopaco
Binary: twopaco
Architecture: any
Version: 1.0.0+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/medvedevgroup/TwoPaCo
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/twopaco
Vcs-Git: https://salsa.debian.org/med-team/twopaco.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev
Package-List:
twopaco deb science optional arch=any
Checksums-Sha1:
7ac2cf80ebf233ce853c55191f3ca0bfa5b583d0 179408 twopaco_1.0.0+dfsg.orig.tar.xz
86df1a2f68e225530f500de5903ab7170e0f5640 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz
Checksums-Sha256:
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63a88dbcacb9c2da0f4353aa54d80d6b64262890b853bf17a886a228e2a5f42c 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz
Files:
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7629a6586711642df0b2728632bce45d 5356 twopaco_1.0.0+dfsg-1.debian.tar.xz
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Mon Jan 8 20:41:31 UTC 2024 I: Checking whether the package is not for us
Mon Jan 8 20:41:31 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net.
Mon Jan 8 20:41:31 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Mon Jan 8 21:06:58 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Jan 8 08:41:37 -12 2024
I: pbuilder-time-stamp: 1704746497
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [twopaco_1.0.0+dfsg-1.dsc]
I: copying [./twopaco_1.0.0+dfsg.orig.tar.xz]
I: copying [./twopaco_1.0.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Sep 29 05:53:28 2022
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./twopaco_1.0.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting twopaco in twopaco-1.0.0+dfsg
dpkg-source: info: unpacking twopaco_1.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2252061/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='df5f893533bf4639b1006ef41bb80c19'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2252061'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/pbuilderrc_sg5B --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos1-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 23 2023 more
-rwsr-xr-x 1 root root 59704 Mar 23 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 23 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 23 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/2252061/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18148 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libtbb-dev; however:
Package libtbb-dev is not installed.
pbuilder-satisfydepends-dummy depends on libtclap-dev; however:
Package libtclap-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhwloc15{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget
0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded.
Need to get 36.2 MB of archives. After unpacking 138 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u4 [390 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libtbbmalloc2 amd64 2021.8.0-2 [46.3 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libtbbbind-2-5 amd64 2021.8.0-2 [13.5 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtbb12 amd64 2021.8.0-2 [79.1 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 libtbb-dev amd64 2021.8.0-2 [192 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 libtclap-dev amd64 1.2.5-1+b1 [3360 kB]
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I: Building the package
I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes
dpkg-buildpackage: info: source package twopaco
dpkg-buildpackage: info: source version 1.0.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --sourcedir=src
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cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../src
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[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o
[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o
[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp
[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o
[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp
[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o
[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp
[ 92%] Linking CXX executable graphdump
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread
make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
[ 92%] Built target graphdump
[100%] Linking CXX executable twopaco
cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread
make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
[100%] Built target twopaco
make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
obj-*/graphconstructor/twopaco --test -f 34 example/example.fa
Test # 0 PASSED
Test # 1 PASSED
Test # 2 PASSED
Test # 3 PASSED
Test # 4 PASSED
Test # 5 PASSED
Test # 6 PASSED
Test # 7 PASSED
Test # 8 PASSED
Test # 9 PASSED
obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg
Threads = 1
Vertex length = 11
Hash functions = 5
Filter size = 1048576
Capacity = 1
Files:
example/example.fa
--------------------------------------------------------------------------------
Round 0, 0:1048576
Pass Filling Filtering
1 0 0
2 0 0
True junctions count = 7
False junctions count = 0
Hash table size = 7
Candidate marks count = 16
--------------------------------------------------------------------------------
Reallocating bifurcations time: 0
True marks count: 16
Edges construction time: 0
--------------------------------------------------------------------------------
Distinct junctions = 7
TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing.
TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0);
obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--sourcedir=src
dh_prep -O--sourcedir=src
dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src
cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RELEASE"
-- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump
-- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-x86_64-linux-gnu'
dh_installdocs -O--sourcedir=src
dh_installchangelogs -O--sourcedir=src
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
dh_installsystemduser -O--sourcedir=src
dh_perl -O--sourcedir=src
dh_link -O--sourcedir=src
dh_strip_nondeterminism -O--sourcedir=src
dh_compress -O--sourcedir=src
dh_fixperms -O--sourcedir=src
debian/rules override_dh_missing
make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
dh_missing --list-missing
dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere
dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/dnachar.h exists in src but is not installed to anywhere
dh_missing: warning: common/junctionapi.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/Makefile exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/README.md exists in src but is not installed to anywhere (related file: "/build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md")
dh_missing: warning: common/ngramhashing/characterhash.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/cyclichash.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/example.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/example2.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/example3.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/example4.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/example64bits.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/generalhash.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/mersennetwister.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/rabinkarphash.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/speedtesting.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/threewisehash.h exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/unit.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/ngramhashing/ztimer.h exists in src but is not installed to anywhere
dh_missing: warning: common/spooky/SpookyV2.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/spooky/SpookyV2.h exists in src but is not installed to anywhere
dh_missing: warning: common/streamfastaparser.cpp exists in src but is not installed to anywhere
dh_missing: warning: common/streamfastaparser.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/CMakeLists.txt exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/assemblyedgeconstructor.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/assemblyedgeconstructor.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/bifurcationstorage.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/candidateoccurence.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/common.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/common.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/compressedstring.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/compressedstring.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/concurrentbitvector.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/concurrentbitvector.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/constructor.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/test.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/test.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/vertexenumerator.cpp exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/vertexenumerator.h exists in src but is not installed to anywhere
dh_missing: warning: graphconstructor/vertexrollinghash.h exists in src but is not installed to anywhere
dh_missing: warning: graphdump/CMakeLists.txt exists in src but is not installed to anywhere
dh_missing: warning: graphdump/glueGfa1.py exists in src but is not installed to anywhere
dh_missing: warning: graphdump/glueGfa2.py exists in src but is not installed to anywhere
dh_missing: warning: graphdump/graphdump.cpp exists in src but is not installed to anywhere
dh_missing: warning: naiveconstructor/naiveconstructor.cpp exists in src but is not installed to anywhere
While detecting missing files, dh_missing noted some files with a similar name to those
that were missing. This warning /might/ be resolved by replacing references to the
missing files with the similarly named ones that dh_missing found - assuming the content
is identical.
As an example, you might want to replace:
* /build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md
with:
* common/ngramhashing/README.md
in a file in debian/ or as argument to one of the dh_* tools called from debian/rules.
(Note it is possible the paths are not used verbatim but instead directories
containing or globs matching them are used instead)
Alternatively, add the missing file to debian/not-installed if it cannot and should not
be used.
The following debhelper tools have reported what they installed (with files per package)
* dh_installdocs: twopaco (0)
* dh_installexamples: twopaco (10)
* dh_installman: twopaco (2)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
If the omission is intentional or no other helper can take care of this consider adding the
paths to debian/not-installed.
make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
dh_dwz -a -O--sourcedir=src
dh_strip -a -O--sourcedir=src
dh_makeshlibs -a -O--sourcedir=src
dh_shlibdeps -a -O--sourcedir=src
dh_installdeb -O--sourcedir=src
dh_gencontrol -O--sourcedir=src
dh_md5sums -O--sourcedir=src
dh_builddeb -O--sourcedir=src
dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_amd64.deb'.
dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2252061 and its subdirectories
I: Current time: Mon Jan 8 09:06:56 -12 2024
I: pbuilder-time-stamp: 1704748016
Mon Jan 8 21:06:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Mon Jan 8 21:06:59 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Mon Jan 8 21:15:28 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Mon Jan 8 21:15:29 UTC 2024 I: twopaco_1.0.0+dfsg-1_amd64.changes:
Format: 1.8
Date: Thu, 29 Sep 2022 01:51:49 -0400
Source: twopaco
Binary: twopaco twopaco-dbgsym
Architecture: amd64
Version: 1.0.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
twopaco - build the compacted de Bruijn graph from many complete genomes
Closes: 1013182
Changes:
twopaco (1.0.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Standards-Version: 4.6.1 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
.
[ Andrius Merkys ]
* New upstream version 1.0.0+dfsg (Closes: #1013182)
* Drop upstream-integrated patches.
* Update manpages.
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Files:
18150b28bfab6e8eef1171f90107231e 6161100 debug optional twopaco-dbgsym_1.0.0+dfsg-1_amd64.deb
8493d420404ea5f68cc7c31840f1b92b 6114 science optional twopaco_1.0.0+dfsg-1_amd64.buildinfo
b4fc07f3d3afe2be8bc6e9800b693d4e 385960 science optional twopaco_1.0.0+dfsg-1_amd64.deb
Mon Jan 8 21:15:30 UTC 2024 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/twopaco_1.0.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/twopaco_1.0.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/twopaco_1.0.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/b1/twopaco_1.0.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.OF0g7YAp/b2/twopaco_1.0.0+dfsg-1_amd64.changes
## close_archive (total time: 0.000s)
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 4 calls diffoscope.comparators.tar.TarContainer
0.000s 2 calls diffoscope.comparators.deb.DebContainer
0.000s 2 calls diffoscope.comparators.deb.DebTarContainer
## command (total time: 0.152s)
0.093s 6 calls xz
0.033s 7 calls diff
0.012s 2 calls cmp
0.012s 2 calls cmp (external)
0.001s 10 calls xxd
0.001s 11 calls cmp (internal)
## compare_files (cumulative) (total time: 0.955s)
0.294s 1 call abc.DotChangesFile
0.260s 1 call abc.DebFile
0.236s 2 calls abc.XzFile
0.108s 1 call abc.DebDataTarFile
0.026s 1 call abc.TarFile
0.017s 1 call abc.TextFile
0.008s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember
0.006s 1 call abc.Md5sumsFile
## container_extract (total time: 0.119s)
0.094s 6 calls diffoscope.comparators.xz.XzContainer
0.017s 32 calls diffoscope.comparators.deb.DebTarContainer
0.005s 8 calls diffoscope.comparators.deb.DebContainer
0.004s 6 calls diffoscope.comparators.tar.TarContainer
## diff (total time: 0.042s)
0.042s 22 calls linediff
## has_same_content_as (total time: 0.014s)
0.009s 2 calls abc.DebFile
0.004s 1 call abc.DebDataTarFile
0.000s 3 calls abc.TextFile
0.000s 2 calls abc.Md5sumsFile
0.000s 2 calls abc.XzFile
0.000s 1 call abc.DotChangesFile
0.000s 1 call abc.TarFile
0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember
## main (total time: 0.839s)
0.838s 2 calls outputs
0.000s 1 call cleanup
## open_archive (total time: 0.000s)
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 4 calls diffoscope.comparators.tar.TarContainer
0.000s 2 calls diffoscope.comparators.deb.DebContainer
0.000s 2 calls diffoscope.comparators.deb.DebTarContainer
## output (total time: 0.156s)
0.155s 1 call html
0.001s 1 call text
0.000s 1 call json
## recognizes (total time: 0.150s)
0.082s 12 calls diffoscope.comparators.binary.FilesystemFile
0.039s 900 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.015s 108 calls diffoscope.comparators.debian.DebControlMember
0.014s 256 calls diffoscope.comparators.utils.archive.ArchiveMember
0.000s 10 calls abc.DotChangesFile
0.000s 16 calls abc.Md5sumsFile
## specialize (total time: 0.062s)
0.062s 13 calls specialize
Mon Jan 8 21:15:31 UTC 2024 E: twopaco failed to build reproducibly in bookworm on amd64.
Mon Jan 8 21:15:31 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/amd64/twopaco_1.0.0+dfsg-1.diffoscope.html
Mon Jan 8 21:15:32 UTC 2024 I: Submitting .buildinfo files to external archives:
Mon Jan 8 21:15:32 UTC 2024 I: Submitting 8.0K b1/twopaco_1.0.0+dfsg-1_amd64.buildinfo.asc
Mon Jan 8 21:15:33 UTC 2024 I: Submitting 8.0K b2/twopaco_1.0.0+dfsg-1_amd64.buildinfo.asc
Mon Jan 8 21:15:33 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Jan 8 21:15:33 UTC 2024 I: Done submitting .buildinfo files.
Mon Jan 8 21:15:33 UTC 2024 I: Removing signed twopaco_1.0.0+dfsg-1_amd64.buildinfo.asc files:
removed './b1/twopaco_1.0.0+dfsg-1_amd64.buildinfo.asc'
removed './b2/twopaco_1.0.0+dfsg-1_amd64.buildinfo.asc'