Sun Jan 7 18:51:23 UTC 2024 I: starting to build amp/bookworm/arm64 on jenkins on '2024-01-07 18:51' Sun Jan 7 18:51:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/23139/console.log Sun Jan 7 18:51:23 UTC 2024 I: Downloading source for bookworm/amp=0.6.1-1 --2024-01-07 18:51:23-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/amp/amp_0.6.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2095 (2.0K) [text/prs.lines.tag] Saving to: ‘amp_0.6.1-1.dsc’ 0K .. 100% 239M=0s 2024-01-07 18:51:23 (239 MB/s) - ‘amp_0.6.1-1.dsc’ saved [2095/2095] Sun Jan 7 18:51:23 UTC 2024 I: amp_0.6.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: amp Binary: python3-amp Architecture: any Version: 0.6.1-1 Maintainer: Debian Science Maintainers Uploaders: Muammar El Khatib Homepage: https://bitbucket.org/andrewpeterson/amp Standards-Version: 4.0.0 Vcs-Browser: https://salsa.debian.org/science-team/amp Vcs-Git: https://salsa.debian.org/science-team/amp.git Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server Package-List: python3-amp deb science optional arch=any Checksums-Sha1: 5a5a3c352695c5e480e3abdf7d5c988d8ca40e61 3250424 amp_0.6.1.orig.tar.gz 7e67aac6160db68d82eac927c54c3039bbc76fa3 3428 amp_0.6.1-1.debian.tar.xz Checksums-Sha256: 0111cda57c55caa21529c1fae53625e6c9a9653434e0be8d54d6d1a46042116f 3250424 amp_0.6.1.orig.tar.gz a7a870c8f5a33d0d5158a80355a73716f5326bdbd17b56af876039106a34024e 3428 amp_0.6.1-1.debian.tar.xz Files: 8e5350ac9cc6d1857ade89d63cbbd825 3250424 amp_0.6.1.orig.tar.gz 1edd42a5bafc1976ddb7852f741e2548 3428 amp_0.6.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEi3hoeGwz5cZMTQpICBa54Yx2K60FAlvV0RwACgkQCBa54Yx2 K60QGhAAkpWbcW9JH6r7cYCBjGs5VjM6icY++Tafozh2ve0+OyvDm2oX5IfLfboc rmlIrqdHstufIfg1d+J4wz5lIv02HTLHjHxKTtoLgDDaWeKx1fH2oxXEY1vLBSGe V9+voE6q8LD/GrvWTVWqzEp2pdRQlwwfI+DsPw3hQ3JsOIhIiC3oN5Ker/56h27J 6jwjndv1IdJ9hjaROdJdGYawJ4eDrmi7vfM90YAOp5QxMxZuWct1JVllSYUy/oRk ZWhkWQBXk5YPucuZDWk81lC3JG7vIF3JV0wN9lT/Zr0miXq6bWk0oDyiTXCFqXz4 vcavZviEIcSh16HSMXgReLv/LptX/IgCWRSMoBq7L2cdDWT5Ypv0iIq9APElUKHp /oz1se61DgDi2MHLYEDQ+nlJEStM0SvvE0sOlnJf2pQ3oxLvK8v1pRz4laokaRjL WTk6SejTwvYcvtfp0/z8akZifhHHh9x826dr009lCK6Dr0c6qqheETRJKvCVwKww FgL41Si9rNkUlNEWJYCMCIHMwIRgqFEx/OAN5y5GAxhQxBv+TkXAPBJ1Ljq+obM8 hsFHwbnLNgRBGGpHMl1Z0/paaX6NYdm9HDB9rYUQrcpJl55PltnIpMx0AYcSdQ5d XHIhTFApqu0IULIGmc1PkZjXlrf40Bwq035iChvGm9RR41CDyq8= =BG7y -----END PGP SIGNATURE----- Sun Jan 7 18:51:23 UTC 2024 I: Checking whether the package is not for us Sun Jan 7 18:51:23 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sun Jan 7 18:51:23 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sun Jan 7 18:54:41 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 7 06:51:26 -12 2024 I: pbuilder-time-stamp: 1704653486 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [amp_0.6.1-1.dsc] I: copying [./amp_0.6.1.orig.tar.gz] I: copying [./amp_0.6.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 28 15:09:16 2018 gpgv: using RSA key 8B7868786C33E5C64C4D0A480816B9E18C762BAD gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./amp_0.6.1-1.dsc: no acceptable signature found dpkg-source: info: extracting amp in amp-0.6.1 dpkg-source: info: unpacking amp_0.6.1.orig.tar.gz dpkg-source: info: unpacking amp_0.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile.patch dpkg-source: info: applying 03_tools.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1349135/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d740fee125ff499b9635800b53101497' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1349135' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/pbuilderrc_XDzP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/b1 --logfile b1/build.log amp_0.6.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink04-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash -rwxr-xr-x 3 root root 67728 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 67744 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 23 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Mar 23 2023 more -rwsr-xr-x 1 root root 67744 Mar 23 2023 mount -rwxr-xr-x 1 root root 67744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Mar 23 2023 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1349135/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18171 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 11); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.9.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pexpect; however: Package python3-pexpect is not installed. pbuilder-satisfydepends-dummy depends on python3-zmq; however: Package python3-zmq is not installed. pbuilder-satisfydepends-dummy depends on openssh-server; however: Package openssh-server is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnorm1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpgm-5.3-0{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsodium23{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} openssh-client{a} openssh-server{a} openssh-sftp-server{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-ase{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-cffi-backend{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-ptyprocess{a} python3-py{a} python3-pyparsing{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-spglib{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-zmq{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} runit-helper{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} ucf{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpam-elogind libpam-systemd lynx ncurses-term psmisc python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After unpacking 671 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libcbor0.8 arm64 0.8.0-2+b1 [26.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libfido2-1 arm64 1.12.0-2+b1 [72.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 openssh-client arm64 1:9.2p1-2+deb12u1 [935 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 openssh-sftp-server arm64 1:9.2p1-2+deb12u1 [60.7 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 runit-helper all 2.15.2 [6520 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libwrap0 arm64 7.6.q-32 [54.7 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 openssh-server arm64 1:9.2p1-2+deb12u1 [411 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 24 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 tzdata all 2023c-5+deb12u1 [296 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [973 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2+deb12u2 [735 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libtk8.6 arm64 8.6.13-2 [729 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1 [540 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 blt arm64 2.5.3+dfsg-4.1 [14.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.3~deb12u1 [619 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 fonts-lyx all 2.3.7-1 [186 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libgfortran-12-dev arm64 12.2.0-14 [396 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 gfortran-12 arm64 12.2.0-14 [8646 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 gfortran arm64 4:12.2.0-3 [1420 B] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-21 [9508 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libopenblas0-pthread arm64 0.3.21+ds-4 [4532 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [24.9 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libnorm1 arm64 1.5.9+dfsg-2 [202 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libopenblas0 arm64 0.3.21+ds-4 [32.6 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libopenblas-pthread-dev arm64 0.3.21+ds-4 [3169 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libopenblas-dev arm64 0.3.21+ds-4 [44.9 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-2 [175 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libpgm-5.3-0 arm64 5.3.128~dfsg-2 [152 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 117 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libqhull-r8.0 arm64 2020.2-5 [230 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libsodium23 arm64 1.0.18-1 [119 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.2+deb12u1 [260 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-6+deb12u1 [301 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.2+deb12u1 [99.3 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.2+deb12u1 [109 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libxsimd-dev arm64 8.1.0-7 [88.8 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libxslt1.1 arm64 1.1.35-1 [231 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 libzmq5 arm64 4.3.4-6 [244 kB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 130 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 133 http://deb.debian.org/debian bookworm/main arm64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 python3-gast all 0.5.2-2 [9364 B] Get: 138 http://deb.debian.org/debian bookworm/main arm64 python3-beniget all 0.4.1-3 [9920 B] Get: 139 http://deb.debian.org/debian bookworm/main arm64 python3-ply all 3.11-5 [65.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 python3-spglib arm64 2.0.2-1+b3 [200 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 python3-tk arm64 3.11.2-3 [97.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 python3-pil.imagetk arm64 9.4.0-1.1+b1 [74.4 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 python3-contourpy arm64 1.0.7-1+b1 [154 kB] Get: 150 http://deb.debian.org/debian bookworm/main arm64 python3-cycler all 0.11.0-1 [8020 B] Get: 151 http://deb.debian.org/debian bookworm/main arm64 python3-brotli arm64 1.0.9-2+b6 [281 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 153 http://deb.debian.org/debian bookworm/main arm64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 python3-mpmath all 1.2.1-2 [418 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 python3-sympy all 1.11.1-1 [4358 kB] Get: 156 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-4 [30.1 kB] Get: 157 http://deb.debian.org/debian bookworm/main arm64 python3-fs all 2.4.16-2 [95.2 kB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 python3-lxml arm64 4.9.2-1+b1 [1074 kB] Get: 159 http://deb.debian.org/debian bookworm/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 160 http://deb.debian.org/debian bookworm/main arm64 unicode-data all 15.0.0-1 [7984 kB] Get: 161 http://deb.debian.org/debian bookworm/main arm64 python3-fonttools arm64 4.38.0-1+b1 [990 kB] Get: 162 http://deb.debian.org/debian bookworm/main arm64 python3-kiwisolver arm64 1.4.4-1+b1 [55.4 kB] Get: 163 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 164 http://deb.debian.org/debian bookworm/main arm64 python3-matplotlib arm64 3.6.3-1+b1 [6774 kB] Get: 165 http://deb.debian.org/debian bookworm/main arm64 python3-ase all 3.22.1-3 [1354 kB] Get: 166 http://deb.debian.org/debian bookworm/main arm64 python3-cffi-backend arm64 1.15.1-5+b1 [84.4 kB] Get: 167 http://deb.debian.org/debian bookworm/main arm64 python3-nose all 1.3.7-9 [130 kB] Get: 168 http://deb.debian.org/debian bookworm/main arm64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 169 http://deb.debian.org/debian bookworm/main arm64 python3-pexpect all 4.8.0-4 [52.9 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 171 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 python3-zmq arm64 24.0.1-4+b1 [249 kB] Fetched 126 MB in 1s (109 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../01-libedit2_3.1-20221030-2_arm64.deb ... Unpacking libedit2:arm64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:arm64. Preparing to unpack .../02-libcbor0.8_0.8.0-2+b1_arm64.deb ... Unpacking libcbor0.8:arm64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:arm64. Preparing to unpack .../03-libfido2-1_1.12.0-2+b1_arm64.deb ... Unpacking libfido2-1:arm64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../04-openssh-client_1%3a9.2p1-2+deb12u1_arm64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u1) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../05-openssh-sftp-server_1%3a9.2p1-2+deb12u1_arm64.deb ... Unpacking openssh-sftp-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../06-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../09-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package runit-helper. Preparing to unpack .../10-runit-helper_2.15.2_all.deb ... Unpacking runit-helper (2.15.2) ... Selecting previously unselected package libwrap0:arm64. Preparing to unpack .../11-libwrap0_7.6.q-32_arm64.deb ... Unpacking libwrap0:arm64 (7.6.q-32) ... Selecting previously unselected package openssh-server. Preparing to unpack .../12-openssh-server_1%3a9.2p1-2+deb12u1_arm64.deb ... Unpacking openssh-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../13-libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../14-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../15-python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18875 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... 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Unpacking python3-zmq (24.0.1-4+b1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up liblcms2-2:arm64 (2.14-2) ... Setting up runit-helper (2.15.2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libboost1.74-dev:arm64 (1.74.0+ds1-21) ... Setting up libsodium23:arm64 (1.0.18-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up liblerc4:arm64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libpgm-5.3-0:arm64 (5.3.128~dfsg-2) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libcbor0.8:arm64 (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libnorm1:arm64 (1.5.9+dfsg-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:arm64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:arm64 (2.1-6.1) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 7 18:52:04 UTC 2024. Universal Time is now: Sun Jan 7 18:52:04 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:arm64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up libwrap0:arm64 (7.6.q-32) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up libimagequant0:arm64 (2.17.0-1) ... Setting up libproc2-0:arm64 (2:4.0.2-3) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.2.4-0.2+deb12u1) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:arm64 (4.5.0-6+deb12u1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libopenjp2-7:arm64 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:arm64 (1.12.0-2+b1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:arm64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libzmq5:arm64 (4.3.4-6) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:arm64 (1.2.4-0.2+deb12u1) ... Setting up libedit2:arm64 (3.1-20221030-2) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libgfortran-12-dev:arm64 (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:arm64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up libxslt1.1:arm64 (1.1.35-1) ... Setting up libx11-6:arm64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up openssh-client (1:9.2p1-2+deb12u1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libopenblas-dev:arm64 (0.3.21+ds-4) ... Setting up libraqm0:arm64 (0.7.0-4.1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up openssh-sftp-server (1:9.2p1-2+deb12u1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:arm64 (2.3.6-1) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up openssh-server (1:9.2p1-2+deb12u1) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:eoG6mfP6T8eB15kuzhBbz8qnSopYoiXrtJrKC3k73Lo root@codethink04-arm64 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:Y7s/29wHogSXaPDNMzAZYn9ekxNJR8q6A8HMO52zETg root@codethink04-arm64 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:3rbUzCdfKyaU21da1tpgdLU7ACZoJtgHHryglbDy5b4 root@codethink04-arm64 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtk8.6:arm64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:arm64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-cffi-backend:arm64 (1.15.1-5+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:arm64 (3.11.2-3) ... Setting up python3-nose (1.3.7-9) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3-all-dev:arm64 (3.11.2-1+b1) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-zmq (24.0.1-4+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-spglib (2.0.2-1+b3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:arm64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:arm64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-ase (3.22.1-3) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/amp-0.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../amp_0.6.1-1_source.changes dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mattia Rizzolo dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running clean removing '/build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts.linux-arm64-3.11' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running config dh_auto_build -O--buildsystem=pybuild I: pybuild pybuild:307: make -C amp python3.11 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1/amp' Building for python3.11 (3.11) make -C model make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/model' make -C descriptor make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' f2py3.11 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c creating /tmp/tmphognvwax/src.linux-arm64-3.11 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmphognvwax/src.linux-arm64-3.11/fortranobject.c' to sources. INFO: adding '/tmp/tmphognvwax/src.linux-arm64-3.11' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmphognvwax/src.linux-arm64-3.11 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmphognvwax/src.linux-arm64-3.11 INFO: adding '/tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmphognvwax/tmp creating /tmp/tmphognvwax/tmp/tmphognvwax creating /tmp/tmphognvwax/tmp/tmphognvwax/src.linux-arm64-3.11 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmphognvwax/src.linux-arm64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c INFO: aarch64-linux-gnu-gcc: /tmp/tmphognvwax/src.linux-arm64-3.11/fortranobject.c /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4175:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4176:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4177:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c: In function 'f2py_setup_images_props': /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4231:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4232:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4233:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4234:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4235:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4236:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4237:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4239:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4283:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4284:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4285:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.c:4286:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating /tmp/tmphognvwax/descriptor creating /tmp/tmphognvwax/model INFO: compile options: '-I/tmp/tmphognvwax/src.linux-arm64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmphognvwax/ -I/tmp/tmphognvwax/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmphognvwax/src.linux-arm64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmphognvwax/ -I/tmp/tmphognvwax/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90 /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared /tmp/tmphognvwax/tmp/tmphognvwax/src.linux-arm64-3.11/fmodulesmodule.o /tmp/tmphognvwax/tmp/tmphognvwax/src.linux-arm64-3.11/fortranobject.o /tmp/tmphognvwax/model.o /tmp/tmphognvwax/descriptor/cutoffs.o /tmp/tmphognvwax/model/neuralnetwork.o /tmp/tmphognvwax/descriptor/gaussian.o /tmp/tmphognvwax/descriptor/zernike.o /tmp/tmphognvwax/tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers.o /tmp/tmphognvwax/tmp/tmphognvwax/src.linux-arm64-3.11/fmodules-f2pywrappers2.o -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/aarch64-linux-gnu -lgfortran -o ./fmodules.cpython-311-aarch64-linux-gnu.so Removing build directory /tmp/tmphognvwax make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp' I: pybuild base:240: /usr/bin/python3 setup.py build /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: f2py:> build/src.linux-arm64-3.11/amp/fmodulesmodule.c creating build creating build/src.linux-arm64-3.11 creating build/src.linux-arm64-3.11/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Post-processing... Block: fmodules Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-arm64-3.11/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90" INFO: adding 'build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp' to include_dirs. creating build/src.linux-arm64-3.11/build creating build/src.linux-arm64-3.11/build/src.linux-arm64-3.11 creating build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp INFO: adding 'build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_py creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/utilities.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression copying amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/VERSION -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp2z7a18ym/usr creating /tmp/tmp2z7a18ym/usr/lib creating /tmp/tmp2z7a18ym/usr/lib/python3 creating /tmp/tmp2z7a18ym/usr/lib/python3/dist-packages creating /tmp/tmp2z7a18ym/usr/lib/python3/dist-packages/numpy creating /tmp/tmp2z7a18ym/usr/lib/python3/dist-packages/numpy/distutils creating /tmp/tmp2z7a18ym/usr/lib/python3/dist-packages/numpy/distutils/checks INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=native' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-O3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1786] : check requested baseline INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMD' with flags () INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON_VFPV4' with flags () INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON' with flags () INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON_FP16' with flags () INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+fp16) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDHP' with flags (-march=armv8.2-a+fp16) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16 -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+dotprod) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+dotprod' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDDP' with flags (-march=armv8.2-a+dotprod) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+dotprod -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+fp16fml) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16fml' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDFHM' with flags (-march=armv8.2-a+fp16+fp16fml) INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16+fp16fml -Werror' INFO: CCompilerOpt.__init__[1807] : skip features (NEON NEON_FP16 ASIMD NEON_VFPV4) since its part of baseline INFO: CCompilerOpt.__init__[1811] : initialize targets groups INFO: CCompilerOpt.__init__[1813] : parse target group simd_test INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (VSX2 XOP AVX512_SKX FMA4 (FMA3 AVX2) VSX3 VXE2 AVX512F SSE42 VSX4 SSE2 VXE VSX VX) not part of baseline or dispatch-able features INFO: CCompilerOpt._parse_policy_not_keepbase[2136] : skip baseline features (ASIMD) INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-arm64-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-arm64-3.11/numpy/distutils/include does not exist, creating it INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'amp.fmodules' extension INFO: compiling C sources INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-arm64-cpython-311/build creating build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11 creating build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/amp creating build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/build creating build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/build/src.linux-arm64-3.11 creating build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp INFO: compile options: '-Ibuild/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-arm64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: build/src.linux-arm64-3.11/amp/fmodulesmodule.c INFO: aarch64-linux-gnu-gcc: build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp/fortranobject.c build/src.linux-arm64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4185:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4185 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4186:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4186 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4187:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4187 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4188:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4188 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4231:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4231 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4232:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4232 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4233:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4233 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_images_props': build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4287:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4287 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4288:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4288 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4289:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4289 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4290:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4290 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4291:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4291 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4292:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4292 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4293:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4293 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-arm64-3.11/amp/fmodulesmodule.c:4295:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4295 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ INFO: compiling Fortran 90 module sources creating build/temp.linux-arm64-cpython-311/amp INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating build/temp.linux-arm64-cpython-311/amp/model creating build/temp.linux-arm64-cpython-311/amp/descriptor INFO: compile options: '-Ibuild/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-arm64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-arm64-cpython-311/amp -Ibuild/temp.linux-arm64-cpython-311/amp' INFO: gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: amp/descriptor/cutoffs.f90 INFO: gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-Ibuild/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-arm64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-arm64-cpython-311/amp -Ibuild/temp.linux-arm64-cpython-311/amp' INFO: gfortran:f90: amp/descriptor/gaussian.f90 INFO: gfortran:f90: amp/descriptor/zernike.f90 INFO: gfortran:f90: build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90 build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:141:63: 141 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 272 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:202:9: 202 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 325 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:187:70: 187 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 312 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:235:68: 235 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 354 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:220:69: 220 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 341 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:170:55: 170 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 297 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:157:56: 157 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 286 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:129:62: 129 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 262 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:388:44: 388 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 412 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:398:50: 398 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 421 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/amp/fmodulesmodule.o build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp/fortranobject.o build/temp.linux-arm64-cpython-311/amp/model/neuralnetwork.o build/temp.linux-arm64-cpython-311/amp/descriptor/cutoffs.o build/temp.linux-arm64-cpython-311/amp/model.o build/temp.linux-arm64-cpython-311/amp/descriptor/gaussian.o build/temp.linux-arm64-cpython-311/amp/descriptor/zernike.o build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers.o build/temp.linux-arm64-cpython-311/build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/aarch64-linux-gnu -lgfortran -o /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-aarch64-linux-gnu.so INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: aarch64 Compiler : gcc CPU baseline : Requested : 'min' Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD Flags : none Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : ASIMDHP ASIMDDP ASIMDFHM Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-arm64-cpython-311/ccompiler_opt_cache_ext.py debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-amp/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/amp-0.6.1/debian/python3-amp /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: adding 'build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-arm64-3.11/build/src.linux-arm64-3.11/amp' to include_dirs. INFO: adding 'build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-arm64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_py running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.__init__[813] : load cache from file -> /build/reproducible-path/amp-0.6.1/build/temp.linux-arm64-cpython-311/ccompiler_opt_cache_ext.py INFO: CCompilerOpt.__init__[824] : hit the file cache INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext running install_lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11 creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/VERSION -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/utilities.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/tflow.py to tflow.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/example.py to example.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py to zernike.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/utilities.py to utilities.cpython-311.pyc running install_egg_info running egg_info creating amp_atomistics.egg-info writing amp_atomistics.egg-info/PKG-INFO writing dependency_links to amp_atomistics.egg-info/dependency_links.txt writing requirements to amp_atomistics.egg-info/requires.txt writing top-level names to amp_atomistics.egg-info/top_level.txt writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/egg_info.py:655: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. warnings.warn( reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' Copying amp_atomistics.egg-info to /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp_atomistics-0.6.1.egg-info Skipping SOURCES.txt running install_scripts running install_clib INFO: customize UnixCCompiler INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: aarch64 Compiler : gcc CPU baseline : Requested : 'min' Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD Flags : none Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : ASIMDHP ASIMDDP ASIMDFHM Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-arm64-cpython-311/ccompiler_opt_cache_ext.py I: pybuild pybuild:333: cp -r '/build/reproducible-path/amp-0.6.1/tests' '/build/reproducible-path/amp-0.6.1/debian/python3-amp//usr/lib/python3.11/dist-packages/amp' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_python3 W: dh_python3 fs:147: Paths differ: debian/python3-amp/usr/lib/python3.11/dist-packages/amp/fmodules.cpython-311-aarch64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-311-aarch64-linux-gnu.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress dh_numpy3 dh_fixperms make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-amp-dbgsym' in '../python3-amp-dbgsym_0.6.1-1_arm64.deb'. dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../amp_0.6.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../amp_0.6.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1349135 and its subdirectories I: Current time: Sun Jan 7 06:54:39 -12 2024 I: pbuilder-time-stamp: 1704653679 Sun Jan 7 18:54:41 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Jan 7 18:54:41 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Jan 7 18:57:26 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Jan 7 18:57:27 UTC 2024 I: amp_0.6.1-1_arm64.changes: Format: 1.8 Date: Sun, 28 Oct 2018 16:05:16 +0100 Source: amp Binary: python3-amp python3-amp-dbgsym Architecture: arm64 Version: 0.6.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Mattia Rizzolo Description: python3-amp - Atomistic Machine-learning Package (python 3) Changes: amp (0.6.1-1) unstable; urgency=medium . * Team upload. . [ Muammar El Khatib ] * New upstream release. * Refresh patches. * Move Vcs-* fields to salsa.d.o. . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Mattia Rizzolo ] * Bump debhelper compat level to 11. * Rewrite the amp Makefile's patch to support building for arbitrary python versions. Checksums-Sha1: e9210b0141593320fc73149edf3756197898c85b 9753 amp_0.6.1-1_arm64.buildinfo c67817f126359fa4f8a7aef6a9babc6ad8b316fd 343072 python3-amp-dbgsym_0.6.1-1_arm64.deb 6eebe7d75c5c5e2ce8f3274e65c2d7f7bbb8224d 224452 python3-amp_0.6.1-1_arm64.deb Checksums-Sha256: 74fc0b377c7ada1e7ba638792619b1e347de86b8d7fe4189f01cdb13a39591aa 9753 amp_0.6.1-1_arm64.buildinfo 67cb9dfe013649a25c33c3aeb55b5f435e76d878b819a347f35175ab8434cdf6 343072 python3-amp-dbgsym_0.6.1-1_arm64.deb 2d5c5df6d79b00b904cda5f0d8a8f33f041a13533a90df925386217775bd6883 224452 python3-amp_0.6.1-1_arm64.deb Files: a491522423dcb9a38766f2a7ea557bea 9753 science optional amp_0.6.1-1_arm64.buildinfo 5e14fa3ce780e7b5377a439872631dbc 343072 debug optional python3-amp-dbgsym_0.6.1-1_arm64.deb 384d650e878ce2a9c1933ef237a09c51 224452 science optional python3-amp_0.6.1-1_arm64.deb Sun Jan 7 18:57:28 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/amp_0.6.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/amp_0.6.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/amp_0.6.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/b1/amp_0.6.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.auDq6OoS/b2/amp_0.6.1-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 21.668s) 8.446s 111 calls diff 8.183s 937 calls readelf 4.406s 165 calls objdump 0.276s 2 calls objcopy 0.228s 18 calls xz 0.111s 22 calls strings 0.008s 2 calls cmp 0.008s 2 calls cmp (external) 0.002s 19 calls cmp (internal) ## compare_files (cumulative) (total time: 64.080s) 12.009s 1 call abc.DotChangesFile 11.991s 2 calls abc.DebFile 11.937s 4 calls abc.XzFile 11.676s 2 calls abc.DebDataTarFile 11.473s 2 calls abc.ElfFile 4.226s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.559s 29 calls diffoscope.comparators.elf.ElfSection 0.092s 2 calls abc.TarFile 0.075s 3 calls diffoscope.comparators.elf.ElfStringSection 0.016s 1 call abc.TextFile 0.015s 2 calls abc.Md5sumsFile 0.012s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.298s) 0.229s 18 calls diffoscope.comparators.xz.XzContainer 0.037s 86 calls diffoscope.comparators.deb.DebTarContainer 0.018s 22 calls diffoscope.comparators.deb.DebContainer 0.014s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.189s) 0.189s 202 calls linediff ## has_same_content_as (total time: 0.011s) 0.008s 2 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.ElfFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.TarFile 0.000s 29 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.DebFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 13.047s) 13.046s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.642s) 0.615s 1 call html 0.016s 1 call text 0.011s 1 call json ## recognizes (total time: 0.354s) 0.120s 1716 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.111s 768 calls diffoscope.comparators.utils.archive.ArchiveMember 0.060s 638 calls diffoscope.comparators.elf.ElfSection 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile 0.019s 176 calls diffoscope.comparators.elf.ElfCodeSection 0.013s 216 calls diffoscope.comparators.debian.DebControlMember 0.006s 66 calls diffoscope.comparators.elf.ElfStringSection 0.001s 22 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.179s) 0.179s 65 calls specialize Sun Jan 7 18:57:42 UTC 2024 E: amp failed to build reproducibly in bookworm on arm64. Sun Jan 7 18:57:42 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/arm64/amp_0.6.1-1.diffoscope.html Sun Jan 7 18:57:44 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jan 7 18:57:44 UTC 2024 I: Submitting 12K b1/amp_0.6.1-1_arm64.buildinfo.asc Sun Jan 7 18:57:46 UTC 2024 I: Submitting 12K b2/amp_0.6.1-1_arm64.buildinfo.asc Sun Jan 7 18:57:47 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 7 18:57:47 UTC 2024 I: Done submitting .buildinfo files. Sun Jan 7 18:57:47 UTC 2024 I: Removing signed amp_0.6.1-1_arm64.buildinfo.asc files: removed './b1/amp_0.6.1-1_arm64.buildinfo.asc' removed './b2/amp_0.6.1-1_arm64.buildinfo.asc'