Wed Jun 7 06:07:51 UTC 2023 I: starting to build libbio-cluster-perl/bookworm/arm64 on jenkins on '2023-06-07 06:07'
Wed Jun 7 06:07:51 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/480/console.log
Wed Jun 7 06:07:51 UTC 2023 I: Downloading source for bookworm/libbio-cluster-perl=1.7.3-6
--2023-06-07 06:07:52-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbio-cluster-perl/libbio-cluster-perl_1.7.3-6.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2201 (2.1K) [text/prs.lines.tag]
Saving to: ‘libbio-cluster-perl_1.7.3-6.dsc’
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2023-06-07 06:07:52 (292 MB/s) - ‘libbio-cluster-perl_1.7.3-6.dsc’ saved [2201/2201]
Wed Jun 7 06:07:52 UTC 2023 I: libbio-cluster-perl_1.7.3-6.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libbio-cluster-perl
Binary: libbio-cluster-perl
Architecture: all
Version: 1.7.3-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://metacpan.org/release/Bio-Cluster
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-cluster-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-cluster-perl.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl
Package-List:
libbio-cluster-perl deb perl optional arch=all
Checksums-Sha1:
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3ad3a0be46ebcac0abd0501a052975daad9f909c 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz
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9ba3e4d2ad5f9d3b62b5156b8e9e05949ab1c267c0f495349852bbe7260dd153 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz
Files:
9a1b88476a3fe576ca6749b98aff3453 58304 libbio-cluster-perl_1.7.3.orig.tar.gz
0aba216206f1d7d942ae86057d7f1b08 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz
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Wed Jun 7 06:07:52 UTC 2023 I: Checking whether the package is not for us
Wed Jun 7 06:07:52 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net.
Wed Jun 7 06:07:52 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net.
Wed Jun 7 06:08:58 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Jun 6 18:07:55 -12 2023
I: pbuilder-time-stamp: 1686118075
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-cluster-perl_1.7.3-6.dsc]
I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz]
I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sat Mar 26 22:10:18 2022 -12
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3
dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz
dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19926/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 '
DISTRIBUTION='bookworm'
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='19926'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/pbuilderrc_HFsH --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink10-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Jun 4 22:25 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/19926/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19611 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however:
Package libxml-sax-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however:
Package libbio-variation-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libregexp-ipv6-perl{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget
0 packages upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.4 MB of archives. After unpacking 94.7 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 netbase all 6.4 [12.8 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.9-1 [1382 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
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Get: 29 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
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Get: 33 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libio-string-perl all 1.08-4 [12.1 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libdata-stag-perl all 0.14-3 [448 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 liburi-perl all 5.17-1 [90.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 libclone-perl arm64 0.46-1 [13.5 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libnet-http-perl all 6.22-1 [25.3 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 libwww-perl all 6.68-1 [186 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 libxml-parser-perl arm64 2.46-4 [198 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 libxml-twig-perl all 1:3.52-2 [181 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 libtest-differences-perl all 0.69-1 [18.9 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Fetched 25.4 MB in 1s (18.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
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0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes
dpkg-buildpackage: info: source package libbio-cluster-perl
dpkg-buildpackage: info: source version 1.7.3-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Cluster
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j8
make[1]: Entering directory '/build/libbio-cluster-perl-1.7.3'
cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm
cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm
cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm
cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm
cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm
cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm
cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm
cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm
cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm
cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm
Manifying 10 pod documents
make[1]: Leaving directory '/build/libbio-cluster-perl-1.7.3'
dh_auto_test
make -j8 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-cluster-perl-1.7.3'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t .........
1..10
ok 1 - Bio/Cluster.pm loaded ok
ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok
ok 3 - Bio/Cluster/FamilyI.pm loaded ok
ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok
ok 5 - Bio/Cluster/UniGene.pm loaded ok
ok 6 - Bio/Cluster/UniGeneI.pm loaded ok
ok 7 - Bio/ClusterI.pm loaded ok
ok 8 - Bio/ClusterIO.pm loaded ok
ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok
ok 10 - Bio/ClusterIO/unigene.pm loaded ok
ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
t/Cluster-UniGene.t ....
1..2
ok 1 - use Bio::Cluster::UniGene;
ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI'
ok
t/ClusterIO-unigene.t ..
1..73
ok 1 - use Bio::ClusterIO;
ok 2 - new Bio::ClusterIO object defined
ok 3
ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI'
ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI'
ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI'
ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI'
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
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ok 44
ok 45
ok 46
ok 47
ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI'
ok 49
ok 50
ok 51 - annotation object defined
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI'
ok 67
ok 68 - next cluster
ok 69
ok 70
ok 71
ok 72
ok 73
ok
t/ClusterIO.t ..........
1..12
ok 1 - use Bio::ClusterIO;
ok 2 - use Bio::Cluster::ClusterFactory;
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI'
ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI'
ok
t/SequenceFamily.t .....
1..17
ok 1 - use Bio::SeqIO;
ok 2 - use Bio::Cluster::SequenceFamily;
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok
All tests successful.
Files=7, Tests=114, 6 wallclock secs ( 0.15 usr 0.01 sys + 4.78 cusr 0.50 csys = 5.44 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-cluster-perl-1.7.3'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-cluster-perl/
make -j8 install DESTDIR=/build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-cluster-perl-1.7.3'
Manifying 10 pod documents
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm
Installing /build/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm
make[1]: Leaving directory '/build/libbio-cluster-perl-1.7.3'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/19926 and its subdirectories
I: Current time: Tue Jun 6 18:08:57 -12 2023
I: pbuilder-time-stamp: 1686118137
Wed Jun 7 06:08:59 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net.
Wed Jun 7 06:08:59 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net.
Wed Jun 7 06:10:08 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net.
Wed Jun 7 06:10:09 UTC 2023 I: libbio-cluster-perl_1.7.3-6_arm64.changes:
Format: 1.8
Date: Sun, 27 Mar 2022 11:18:53 +0200
Source: libbio-cluster-perl
Binary: libbio-cluster-perl
Architecture: all
Version: 1.7.3-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
libbio-cluster-perl - BioPerl cluster modules
Changes:
libbio-cluster-perl (1.7.3-6) unstable; urgency=medium
.
* Team upload.
* d/control: depend on libxml-sax-perl, needed by needed by Bio::ClusterIO,
fixing autopkgtest failure in the process.
* Standards-Version: 4.6.0 (routine-update)
* watch file standard 4 (routine-update)
Checksums-Sha1:
3233a5d3763f4670849930b63b0cf47188634453 53360 libbio-cluster-perl_1.7.3-6_all.deb
38d4df308c33d94cb4eb8be01dd8fe50552c3f55 6519 libbio-cluster-perl_1.7.3-6_arm64.buildinfo
Checksums-Sha256:
decbde2c67ec4fa761ee94b2d0670f950afe7f17370baeec4de1d05542e1027f 53360 libbio-cluster-perl_1.7.3-6_all.deb
db6bb8d7ffca1ed3f77400f52f2765ffb4a9c608e68b4ece9d8b65219b417e1e 6519 libbio-cluster-perl_1.7.3-6_arm64.buildinfo
Files:
d2976870043108f577a04ea16a3e390a 53360 perl optional libbio-cluster-perl_1.7.3-6_all.deb
b87fcb380eac58148376421e60d5d1db 6519 perl optional libbio-cluster-perl_1.7.3-6_arm64.buildinfo
Wed Jun 7 06:10:10 UTC 2023 I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/libbio-cluster-perl_1.7.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/libbio-cluster-perl_1.7.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/libbio-cluster-perl_1.7.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/b1/libbio-cluster-perl_1.7.3-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZTYq3anQ/b2/libbio-cluster-perl_1.7.3-6_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.413s)
0.412s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.020s)
0.019s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.001s)
0.001s 1 call specialize
Wed Jun 7 06:10:12 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Wed Jun 7 06:10:12 UTC 2023 I: libbio-cluster-perl from bookworm built successfully and reproducibly on arm64.
Wed Jun 7 06:10:13 UTC 2023 I: Submitting .buildinfo files to external archives:
Wed Jun 7 06:10:13 UTC 2023 I: Submitting 8.0K b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc
Wed Jun 7 06:10:14 UTC 2023 I: Submitting 8.0K b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc
Wed Jun 7 06:10:15 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Jun 7 06:10:15 UTC 2023 I: Done submitting .buildinfo files.
Wed Jun 7 06:10:15 UTC 2023 I: Removing signed libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc files:
removed './b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc'
removed './b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc'