Thu Apr 27 18:50:41 UTC 2023 I: starting to build libfastahack/bookworm/arm64 on jenkins on '2023-04-27 18:50' Thu Apr 27 18:50:41 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/12821/console.log Thu Apr 27 18:50:41 UTC 2023 I: Downloading source for bookworm/libfastahack=1.0.0+dfsg-10 --2023-04-27 18:50:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/libf/libfastahack/libfastahack_1.0.0%2bdfsg-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2357 (2.3K) [text/prs.lines.tag] Saving to: ‘libfastahack_1.0.0+dfsg-10.dsc’ 0K .. 100% 139M=0s 2023-04-27 18:50:41 (139 MB/s) - ‘libfastahack_1.0.0+dfsg-10.dsc’ saved [2357/2357] Thu Apr 27 18:50:41 UTC 2023 I: libfastahack_1.0.0+dfsg-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libfastahack Binary: libfastahack0, libfastahack-dev, fastahack Architecture: any Version: 1.0.0+dfsg-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/ekg/fastahack Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libfastahack Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man Package-List: fastahack deb science optional arch=any libfastahack-dev deb libdevel optional arch=any libfastahack0 deb libs optional arch=any Checksums-Sha1: 3e89fea6a55b5a312a980d1d493a77f64dfb5d9a 9088 libfastahack_1.0.0+dfsg.orig.tar.xz 0ad593ceaa74fab9b8f4db8eab93a3c66404128d 7428 libfastahack_1.0.0+dfsg-10.debian.tar.xz Checksums-Sha256: 41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af 9088 libfastahack_1.0.0+dfsg.orig.tar.xz b1efc6890b3b5a5b73a255bfe15e46b662a4d1e295bf291e825f5d74f40b7c31 7428 libfastahack_1.0.0+dfsg-10.debian.tar.xz Files: ef74d8e313b8f84e6454baa07b9a0026 9088 libfastahack_1.0.0+dfsg.orig.tar.xz 7c38951f47fbeef73f5f5a088211160b 7428 libfastahack_1.0.0+dfsg-10.debian.tar.xz Dgit: 34f0b622ebc9d91b8acb7bc78e8a7a1d8379ea0d debian archive/debian/1.0.0+dfsg-10 https://git.dgit.debian.org/libfastahack -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmLP1PcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpQIRAAydkaLtM2UdcbznsyKbmA9CG/isJ7 Ts7Xd92TtNSmBl1X6ObV6OuihyCiOzWZa0NunWoK2MTtGGLzCyAaXc5VflPi7e2L 1T6f2GwRraoMOGTY0hjnwKFeQSXD8QuraFeh/Ry8LIBN83s3H34Bs9XfQ7D4NyCr klEygB55MmHcmuqF34EvsA6LgRbw2WfEpsDoi5VQTZhFj9w5dPNFx7MHNRZrpqdC zgaEJf/m+7t5BlfwCMSwfQZZqS03b2ewZcmN52hTrT+yl75kD2G8rGqM7OmIc1vJ jdN3MTtNa/FUWTaPnMf5iE90TOFVzwVCBS+po6PJl1IkAmzVnnr8cKRD/BZvd/eX wQXo9DXbzv/j1NAyROFEw/jtWayn/pjHbASm9oleHCXfbYlCRq7quJpF9r40yIUk RceeBOhgEW2Qx1Dme6STUhvyLuDokPiJERGO3vVMBElke1ZKVMaFQGP+i4b24Tzf YtWi5xgucY6/v11fTHvLY3pYzyA4GvmuhoNFpLX0djzL4fWcpJ0ebtVkhHsq1IN6 YFYmGHKzVvzxCJYyvB9XVahdp1+/Nfn720hTBvYidyHeRX0Y1GGrgbNP+2WgeJFH m+um12QJRNnrengDWbFeynAozLiTA6YExEsC1ybXkirKp+KHo1ghX/fOm2JbhsHY tou3ZGGyascYS3o= =GUg2 -----END PGP SIGNATURE----- Thu Apr 27 18:50:41 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 18:50:41 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Thu Apr 27 18:50:41 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Thu Apr 27 18:52:06 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 29 13:13:46 -12 2024 I: pbuilder-time-stamp: 1717031626 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-10.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-10.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 13 20:33:59 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-10.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/665/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='665' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/pbuilderrc_2gGu --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-10.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 28 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/665/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 75.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 d-shlibs all 0.104 [18.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b1 [4880 B] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b1 [4856 B] Fetched 18.6 MB in 1s (31.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../24-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../26-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.49.3_arm64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libdisorder0:arm64. Preparing to unpack .../33-libdisorder0_0.0.2+git20130809.8062ee1-4+b1_arm64.deb ... Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:arm64. Preparing to unpack .../34-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_arm64.deb ... Unpacking libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up d-shlibs (0.104) ... Setting up libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-10_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16912: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j8 make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/aarch64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.a libtool: install: ranlib /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/aarch64-linux-gnu mv /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/aarch64-linux-gnu mv /build/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/aarch64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/aarch64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-10 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/libfastahack-1.0.0+dfsg' echo "On architecture arm64 symbols file is provided" On architecture arm64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-10_arm64) +++ dpkg-gensymbols5pkBip 2024-05-29 13:14:58.492391160 -1200 @@ -32,9 +32,9 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f _ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-10# (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-10# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-10# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg _ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f @@ -42,18 +42,18 @@ (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 0.0+git20160702.bbc645f _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-10# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 1.0.0+dfsg _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-10# (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f _ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f _ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-10# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture arm64 including symbols done" dh_makeshlibs for architecture arm64 including symbols done make[1]: Leaving directory '/build/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-10_arm64.deb'. dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-10_arm64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-10_arm64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-10_arm64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-10_arm64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/665 and its subdirectories I: Current time: Wed May 29 13:15:05 -12 2024 I: pbuilder-time-stamp: 1717031705 Thu Apr 27 18:52:07 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Thu Apr 27 18:52:07 UTC 2023 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Thu Apr 27 18:53:27 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Thu Apr 27 18:53:28 UTC 2023 I: libfastahack_1.0.0+dfsg-10_arm64.changes: Format: 1.8 Date: Thu, 14 Jul 2022 10:28:30 +0200 Source: libfastahack Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym Architecture: arm64 Version: 1.0.0+dfsg-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastahack - utility for indexing and sequence extraction from FASTA files libfastahack-dev - library for indexing and sequence extraction from FASTA files (de libfastahack0 - library for indexing and sequence extraction from FASTA files (li Closes: 1012976 Changes: libfastahack (1.0.0+dfsg-10) unstable; urgency=medium . * d/control: add myself to uploaders. * d/libfastahack0.symbols: mark GCC 12 specific symbols optional. (Closes: #1012976) * d/control: declare compliance to standards version 4.6.1. Checksums-Sha1: c2c564149c564e60bf5bad325e4b4e234797cc97 74644 fastahack-dbgsym_1.0.0+dfsg-10_arm64.deb cb0178cea812d6db323342e356fd2faa76052be9 11456 fastahack_1.0.0+dfsg-10_arm64.deb 94a883d21228defb90c27c024a99cb2ea381aadf 25544 libfastahack-dev_1.0.0+dfsg-10_arm64.deb 4b3c42521d00997522bcda0b628cdc49556eb994 241828 libfastahack0-dbgsym_1.0.0+dfsg-10_arm64.deb deb4d24f2651968db7db5980f60da0f37efd5895 23452 libfastahack0_1.0.0+dfsg-10_arm64.deb 684bb52cc23c14edb9d3c9f52e39bf744135046a 6710 libfastahack_1.0.0+dfsg-10_arm64.buildinfo Checksums-Sha256: cfbd881a4902a21a45dfedeeb9c1374c89b2d5c5125fc30a85964c9c85542bae 74644 fastahack-dbgsym_1.0.0+dfsg-10_arm64.deb 81abf620eb65517269bc44e974e710466095eeee190797a5a7c1b9f7275ac17f 11456 fastahack_1.0.0+dfsg-10_arm64.deb 33ae726547da62ffd51c2aca6b88a554fb8ec927580d894dd5f1862a50f0823b 25544 libfastahack-dev_1.0.0+dfsg-10_arm64.deb 77f033d9548ac3a243c7f99ce4fb02c06ba81fa42a30c64acbdb610cc2e88359 241828 libfastahack0-dbgsym_1.0.0+dfsg-10_arm64.deb 00b289911831783cd9eabbe5dd95bd463909d078aca42a4b3e30b227842f09a7 23452 libfastahack0_1.0.0+dfsg-10_arm64.deb b34779c4a0d55431653ef42ca46040d19bda4c5a186b9f49b99c4058023ef605 6710 libfastahack_1.0.0+dfsg-10_arm64.buildinfo Files: ce1fa03fae24c68c3bb3c2681bc7122b 74644 debug optional fastahack-dbgsym_1.0.0+dfsg-10_arm64.deb ff3dc060af9012a54fbdc5b7d8acb3b4 11456 science optional fastahack_1.0.0+dfsg-10_arm64.deb 21a1ed3dccbbc702ed054635fba6e5ae 25544 libdevel optional libfastahack-dev_1.0.0+dfsg-10_arm64.deb e7b78b353cdfb4a1f8803ad98adf85fc 241828 debug optional libfastahack0-dbgsym_1.0.0+dfsg-10_arm64.deb d083183d9ae5d20d6ade010f8204fdde 23452 libs optional libfastahack0_1.0.0+dfsg-10_arm64.deb 9c9f7a057e0d507432e081ae6dc57b96 6710 science optional libfastahack_1.0.0+dfsg-10_arm64.buildinfo Thu Apr 27 18:53:29 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/libfastahack_1.0.0+dfsg-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/libfastahack_1.0.0+dfsg-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/libfastahack_1.0.0+dfsg-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/b1/libfastahack_1.0.0+dfsg-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Pe0eebWp/b2/libfastahack_1.0.0+dfsg-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 27 18:53:30 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 18:53:30 UTC 2023 I: libfastahack from bookworm built successfully and reproducibly on arm64. Thu Apr 27 18:53:32 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 18:53:32 UTC 2023 I: Submitting 8.0K b1/libfastahack_1.0.0+dfsg-10_arm64.buildinfo.asc Thu Apr 27 18:53:32 UTC 2023 I: Submitting 8.0K b2/libfastahack_1.0.0+dfsg-10_arm64.buildinfo.asc Thu Apr 27 18:53:33 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 18:53:33 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 18:53:33 UTC 2023 I: Removing signed libfastahack_1.0.0+dfsg-10_arm64.buildinfo.asc files: removed './b1/libfastahack_1.0.0+dfsg-10_arm64.buildinfo.asc' removed './b2/libfastahack_1.0.0+dfsg-10_arm64.buildinfo.asc'