Tue Apr 11 00:47:50 UTC 2023 I: starting to build libtabixpp/bookworm/arm64 on jenkins on '2023-04-11 00:47' Tue Apr 11 00:47:50 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/27320/console.log Tue Apr 11 00:47:50 UTC 2023 I: Downloading source for bookworm/libtabixpp=1.1.2-1 --2023-04-11 00:47:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/libt/libtabixpp/libtabixpp_1.1.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2162 (2.1K) [text/prs.lines.tag] Saving to: ‘libtabixpp_1.1.2-1.dsc’ 0K .. 100% 122M=0s 2023-04-11 00:47:50 (122 MB/s) - ‘libtabixpp_1.1.2-1.dsc’ saved [2162/2162] Tue Apr 11 00:47:50 UTC 2023 I: libtabixpp_1.1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libtabixpp Binary: libtabixpp0, libtabixpp-dev Architecture: any Version: 1.1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Sascha Steinbiss Homepage: https://github.com/ekg/tabixpp Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libtabixpp Vcs-Git: https://salsa.debian.org/med-team/libtabixpp.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, tabix Build-Depends: debhelper-compat (= 13), libhts-dev, zlib1g-dev, libbz2-dev, d-shlibs Package-List: libtabixpp-dev deb libdevel optional arch=any libtabixpp0 deb libs optional arch=any Checksums-Sha1: 8adec4c8328420573a439a453efa8da8f6f924a3 6962 libtabixpp_1.1.2.orig.tar.gz 56543e7634f75d12f4624512bff6f292643f972c 48040 libtabixpp_1.1.2-1.debian.tar.xz Checksums-Sha256: c850299c3c495221818a85c9205c60185c8ed9468d5ec2ed034470bb852229dc 6962 libtabixpp_1.1.2.orig.tar.gz bf5fa93a95877793836c78ba962f91e116a779962e1b5b5fa9391663ccbd29a2 48040 libtabixpp_1.1.2-1.debian.tar.xz Files: b15f7e39476040e621ad9bb0f12fab83 6962 libtabixpp_1.1.2.orig.tar.gz 64553b5db8e2fe52a0f0460f298a2862 48040 libtabixpp_1.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPJBl8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtERpg/+O8DZVQawLPXVji3ICsK1WOuyYxskz8ED poORODuADr3z6du+DL7+t5TF50M7pLbMCY3th0xv6Ytum+cJYjTb1xmecBCpQl/w VF7DANLXiDTZSu1cCf1vQfNuzNBb+FLwwn4S3GmnSb++x1L/XVigxMj6oiOJyHJI STE+gPyPmvVZ3Pk2Zu8igHyPs1ITtMGhyfUzPlb4Q5sDiXB9KZVPmklqzxu0yWyI ueiDFpaaUdziAdw41PO7G0qpL1vUmpVDDULHa4AHKKTLRHVI7OAtu69btlK8j8xK C2iCB9P38rPxXSmCg+akdrmR3y5Bzj+iZfn82+5vxyTo/dnjQmcGThBd2TNRU9Ge ZQP0cn8obJa+X1a6dgtyqQIhNTCwTEJypMgXcxnDTORV9RBV/6FZ6hOASqzmhtR1 44jzID7fg4ZWKy+24s4z4HeNwgi0CC8W8c7EG3HuOAdZAtGOzaV3roqzmAFV9oXM a99IsW+ZSJcPxfIlBY/9C/Or3IkoWHPfkcPjc21lsiQW/Pchw8Jf42siEwEqEndA WkyF6J5Se8DOt3JqOF5rkX9r1TnWbAg8dHOOklJRbhzKIsKjjPMcJFOViD6kYkYQ 1xIL0je+1CUuPdJlr0yqmjFFFhvQGlT5I4rTEW9ZPEDRQh4K/EiIQURCLVjyfRyq bhLQZgLZIos= =EPFk -----END PGP SIGNATURE----- Tue Apr 11 00:47:50 UTC 2023 I: Checking whether the package is not for us Tue Apr 11 00:47:50 UTC 2023 I: Starting 1st build on remote node codethink9-arm64.debian.net. Tue Apr 11 00:47:50 UTC 2023 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Tue Apr 11 00:48:51 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 12 19:10:54 -12 2024 I: pbuilder-time-stamp: 1715584254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtabixpp_1.1.2-1.dsc] I: copying [./libtabixpp_1.1.2.orig.tar.gz] I: copying [./libtabixpp_1.1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 18 20:59:11 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libtabixpp_1.1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting libtabixpp in libtabixpp-1.1.2 dpkg-source: info: unpacking libtabixpp_1.1.2.orig.tar.gz dpkg-source: info: unpacking libtabixpp_1.1.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_shared_lib_with_debian_htslib.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27594/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27594' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/pbuilderrc_xJaH --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/b1 --logfile b1/build.log libtabixpp_1.1.2-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27594/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev, zlib1g-dev, libbz2-dev, d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 23.3 MB of archives. After unpacking 90.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 d-shlibs all 0.104 [18.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-7 [356 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libcurl4-gnutls-dev arm64 7.88.1-7 [466 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libdeflate-dev arm64 1.14-1 [50.0 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libhts-dev arm64 1.16+ds-3 [1525 kB] Fetched 23.3 MB in 1s (20.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../31-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../32-libbz2-dev_1.0.8-5+b1_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-5+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../33-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... 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Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libnghttp2-14:arm64 (1.52.0-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up autopoint (0.21-12) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:arm64 (5.4.1-0.2) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up libdeflate-dev:arm64 (1.14-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up libbz2-dev:arm64 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:arm64 (7.88.1-7) ... Setting up libcurl4-gnutls-dev:arm64 (7.88.1-7) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:arm64 (1.16+ds-3) ... Setting up libhts-dev:arm64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libtabixpp-1.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtabixpp_1.1.2-1_source.changes dpkg-buildpackage: info: source package libtabixpp dpkg-buildpackage: info: source version 1.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libtabixpp-1.1.2' dh_auto_clean || /bin/true make -j8 clean make[2]: Entering directory '/build/libtabixpp-1.1.2' rm -rf tabix++ libtabix.a libtabix.so.1 tabix.o stage rm -fr gmon.out *.o a.out *.dSYM tabix++ *~ *.a tabix.aux tabix.log \ tabix.pdf *.class libtabix*.dylib libtabix*so* make[2]: Leaving directory '/build/libtabixpp-1.1.2' make[1]: Leaving directory '/build/libtabixpp-1.1.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libtabixpp-1.1.2' g++ -g -O2 -ffile-prefix-map=/build/libtabixpp-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c tabix.cpp -Ihtslib g++ -g -O2 -ffile-prefix-map=/build/libtabixpp-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -o tabix++ main.cpp tabix.o -Ihtslib -L. -Lhtslib -Wl,-z,relro -Wl,-z,now \ -lhts -lpthread -lm -lz -lcurl -llzma -lbz2 g++ -g -O2 -ffile-prefix-map=/build/libtabixpp-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -shared -o libtabixpp.so.0 tabix.o -fPIC -Wl,-soname,libtabixpp.so.0 -Wl,-z,relro -Wl,-z,now -lhts ar rcs libtabixpp.a tabix.o make[1]: Leaving directory '/build/libtabixpp-1.1.2' dh_auto_test make -j8 test make[1]: Entering directory '/build/libtabixpp-1.1.2' ./tabix++ test/vcf_file.vcf.gz 1 3000150 . C T 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245 1 3000151 . C T 59.2 PASS AN=4;AC=2 GT:DP:GQ 0/1:32:245 0/1:32:245 1 3062915 id3D GTTT G 12.9 q10 DP4=1,2,3,4;AN=4;AC=2;INDEL;STR=test GT:GQ:DP:GL 0/1:409:35:-20,-5,-20 0/1:409:35:-20,-5,-20 1 3062915 idSNP G T,C 12.6 test TEST=5;DP4=1,2,3,4;AN=3;AC=1,1 GT:TT:GQ:DP:GL 0/1:0,1:409:35:-20,-5,-20,-20,-5,-20 2:0,1:409:35:-20,-5,-20 1 3106154 . CAAA C 342 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 1 3106154 . C CT 59.2 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 1 3157410 . GA G 90.6 q10 AN=4;AC=4 GT:GQ:DP 1/1:21:21 1/1:21:21 1 3162006 . GAA G 60.2 PASS AN=4;AC=2 GT:GQ:DP 0/1:212:22 0/1:212:22 1 3177144 . G T 45 PASS AN=4;AC=2 GT:GQ:DP 0/0:150:30 1/1:150:30 1 3177144 . G . 45 PASS AN=4;AC=0 GT:GQ:DP 0/0:150:30 0/0:150:30 1 3184885 . TAAAA TA,T 61.5 PASS AN=4;AC=2,2 GT:GQ:DP 1/2:12:10 1/2:12:10 2 3199812 . G GTT,GT 82.7 PASS AN=4;AC=2,2 GT:GQ:DP 1/2:322:26 1/2:322:26 3 3212016 . CTT C,CT 79 PASS AN=4;AC=2,2 GT:GQ:DP 1/2:91:26 1/2:91:26 4 3258448 . TACACACAC T . PASS AN=4;AC=2 GT:GQ:DP 0/1:325:31 0/1:325:31 make[1]: Leaving directory '/build/libtabixpp-1.1.2' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/libtabixpp-1.1.2' ln -s libtabixpp.so.* libtabixpp.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.hpp" usr/include/ \ libtabixpp.so Library package automatic movement utility --> libhts-dev package exists. set -e install -d -m 755 debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libtabixpp0/usr/lib/aarch64-linux-gnu mv ./libtabixpp.a debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu mv ./libtabixpp.la debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu || true mv ./libtabixpp.so debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu mv /build/libtabixpp-1.1.2/libtabixpp.so.0 debian/libtabixpp0/usr/lib/aarch64-linux-gnu PKGDEV=libtabixpp-dev PKGSHL=libtabixpp0 install -d -m 755 debian/libtabixpp-dev/usr/include/ mv *.hpp debian/libtabixpp-dev/usr/include/ mv: cannot stat './libtabixpp.la': No such file or directory find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/libtabixpp-1.1.2' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtabixpp0-dbgsym' in '../libtabixpp0-dbgsym_1.1.2-1_arm64.deb'. dpkg-deb: building package 'libtabixpp-dev' in '../libtabixpp-dev_1.1.2-1_arm64.deb'. dpkg-deb: building package 'libtabixpp0' in '../libtabixpp0_1.1.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtabixpp_1.1.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../libtabixpp_1.1.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27594 and its subdirectories I: Current time: Sun May 12 19:11:50 -12 2024 I: pbuilder-time-stamp: 1715584310 Tue Apr 11 00:48:52 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Tue Apr 11 00:48:52 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Tue Apr 11 00:49:36 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Tue Apr 11 00:49:36 UTC 2023 I: libtabixpp_1.1.2-1_arm64.changes: Format: 1.8 Date: Thu, 19 Jan 2023 09:54:58 +0100 Source: libtabixpp Binary: libtabixpp-dev libtabixpp0 libtabixpp0-dbgsym Architecture: arm64 Version: 1.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libtabixpp-dev - C++ wrapper to tabix indexer (development files) libtabixpp0 - C++ wrapper to tabix indexer Changes: libtabixpp (1.1.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. Checksums-Sha1: a9cc6c3ba681441334624690d236730ede1bf84d 8756 libtabixpp-dev_1.1.2-1_arm64.deb e348359605d6a7ae47d5a59622540c928f7e35c6 60412 libtabixpp0-dbgsym_1.1.2-1_arm64.deb f0cc6ed90dcc1fb37d74effa2a3640e4456e2287 9120 libtabixpp0_1.1.2-1_arm64.deb 6cfa4d599d86dc5d242af1af4e103eddda0d1afc 6424 libtabixpp_1.1.2-1_arm64.buildinfo Checksums-Sha256: 95cf041c9161a043f4ee77204b507ec9d9ac0c57196275a9e4ac45ce8a2c02e5 8756 libtabixpp-dev_1.1.2-1_arm64.deb cd1985781c86c85652e4fbdd3031693c75cbfcc18fbcec7aa6b8392dc5a11c32 60412 libtabixpp0-dbgsym_1.1.2-1_arm64.deb 287821b9be040fec84e262bb2e0c7c4741f6f13ada45d477c6c036e3ce1f6349 9120 libtabixpp0_1.1.2-1_arm64.deb 5d7072c2d2ae7cfc8a89c83d85b4dbdf3d0aa472083b2d122a94dee301f9ad54 6424 libtabixpp_1.1.2-1_arm64.buildinfo Files: 67455cee06ef3b0d4e7c7be336a3b5da 8756 libdevel optional libtabixpp-dev_1.1.2-1_arm64.deb e32780b5e3868e39aa75b1fd010c2766 60412 debug optional libtabixpp0-dbgsym_1.1.2-1_arm64.deb 836b873611036f8e76aa09cfcbe0dab3 9120 libs optional libtabixpp0_1.1.2-1_arm64.deb fcb91a0d53551a772e44bcce74217da9 6424 science optional libtabixpp_1.1.2-1_arm64.buildinfo Tue Apr 11 00:49:39 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/libtabixpp_1.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/libtabixpp_1.1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/libtabixpp_1.1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/b1/libtabixpp_1.1.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NmA1lEWc/b2/libtabixpp_1.1.2-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.759s) 0.759s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.034s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Tue Apr 11 00:49:41 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 11 00:49:41 UTC 2023 I: libtabixpp from bookworm built successfully and reproducibly on arm64. Tue Apr 11 00:49:54 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Apr 11 00:49:54 UTC 2023 I: Submitting 8.0K b1/libtabixpp_1.1.2-1_arm64.buildinfo.asc Tue Apr 11 00:49:55 UTC 2023 I: Submitting 8.0K b2/libtabixpp_1.1.2-1_arm64.buildinfo.asc Tue Apr 11 00:49:56 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 11 00:49:56 UTC 2023 I: Done submitting .buildinfo files. Tue Apr 11 00:49:56 UTC 2023 I: Removing signed libtabixpp_1.1.2-1_arm64.buildinfo.asc files: removed './b1/libtabixpp_1.1.2-1_arm64.buildinfo.asc' removed './b2/libtabixpp_1.1.2-1_arm64.buildinfo.asc'