Sat Apr 8 07:13:39 UTC 2023 I: starting to build piler/bookworm/arm64 on jenkins on '2023-04-08 07:13' Sat Apr 8 07:13:39 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_25/28643/console.log Sat Apr 8 07:13:39 UTC 2023 I: Downloading source for bookworm/piler=0~20140707-3 --2023-04-08 07:13:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/piler/piler_0%7e20140707-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1930 (1.9K) [text/prs.lines.tag] Saving to: ‘piler_0~20140707-3.dsc’ 0K . 100% 156M=0s 2023-04-08 07:13:39 (156 MB/s) - ‘piler_0~20140707-3.dsc’ saved [1930/1930] Sat Apr 8 07:13:40 UTC 2023 I: piler_0~20140707-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: piler Binary: piler Architecture: any Version: 0~20140707-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.drive5.com/piler/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/piler Vcs-Git: https://salsa.debian.org/med-team/piler.git Build-Depends: debhelper-compat (= 13) Package-List: piler deb science optional arch=any Checksums-Sha1: 22d2efa728cbf1df306e723fcdc6ae68b8c05d38 39827 piler_0~20140707.orig.tar.gz 9989766fe0081e06dc0ef8cb85fb6cba6684f440 3028 piler_0~20140707-3.debian.tar.xz Checksums-Sha256: 3b1be91c497bdb22eac8032a60c9f815bdcd03edc5b25d925314a02f54bec44f 39827 piler_0~20140707.orig.tar.gz 7249f6239199cb983c565731324953cfa79b60537093664978a5a3f8759b24bb 3028 piler_0~20140707-3.debian.tar.xz Files: 6f351fb437d0cc6a1ec84f41998621c9 39827 piler_0~20140707.orig.tar.gz 613ac34398ade07899080798fd5c881e 3028 piler_0~20140707-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+nog0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGg/w/8DCr9MnQ7I+e89qN/1sIXpfpeoUwcpXzD CIem24mGkKjh8xvRQDKnTetKBhrc8flRB0EhX49JVag3uHjkfaVAu8W5cK8BgSth jdJHojDNcdiR7e28GlIX5cOF58Czhkymcf0p/fcrygw2Q6ShgReOV15TpA/+doIC 1U5KU88jFy8xUsx9FudhYdC1F0BK8fhCouVHpdc/9jcftZ5T6Ky3mJ0aZm777EIZ ISqr4Kif156asMLmrl8pldxnubmZVM3T9Uu7oe7890giVyI2OBqysaWYfkK618pV MuKN6GYFw54hC2tWU53fvKvCnxjaNCL+5QkhalEwQcPVR7DLcCFJ7sEtt7w/fAls P+164uaqyK9g6HzHOqtfyQZF8kU8UxkjD0VvRUYLTA+FU3Lee7ehcDqBxXGwMlHn F4lST6OxhCfHsCCwyVQR+QSBCGX07Zk1jJzuw6OeLsOiOqEBmbyDASk4dGKVIglt BMQxXvxS6H80vhVPVNsrfzn0h/uJG1kHS06/92azULLwvhgMGuJ5/w0rZIXoPC3z YB+ILMEWkgTfE9/BK5DYA92vBTSJ5+ZcvYwDuAMcu7B2OZi9RziR+IWDwDRZuRNd P4x8Kci3b//tT3Y5mffoCqvzC2cITUyvsbXGF976a8o6NIViKydtXmuqqEBeLrDe Nx5r4kb55ts= =VPSW -----END PGP SIGNATURE----- Sat Apr 8 07:13:40 UTC 2023 I: Checking whether the package is not for us Sat Apr 8 07:13:40 UTC 2023 I: Starting 1st build on remote node codethink15-arm64.debian.net. Sat Apr 8 07:13:40 UTC 2023 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Sat Apr 8 07:14:54 UTC 2023 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 10 01:36:42 -12 2024 I: pbuilder-time-stamp: 1715348202 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [piler_0~20140707-3.dsc] I: copying [./piler_0~20140707.orig.tar.gz] I: copying [./piler_0~20140707-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 7 19:45:17 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./piler_0~20140707-3.dsc: no acceptable signature found dpkg-source: info: extracting piler in piler-0~20140707 dpkg-source: info: unpacking piler_0~20140707.orig.tar.gz dpkg-source: info: unpacking piler_0~20140707-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17926/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17926' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/pbuilderrc_PtQu --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/b1 --logfile b1/build.log piler_0~20140707-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17926/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 0s (38.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/piler-0~20140707/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../piler_0~20140707-3_source.changes dpkg-buildpackage: info: source package piler dpkg-buildpackage: info: source version 0~20140707-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/piler-0~20140707' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 annot.cpp -o annot.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 annotedge.cpp -o annotedge.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 cons.cpp -o cons.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 contigs.cpp -o contigs.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 crisp.cpp -o crisp.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 findcc.cpp -o findcc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 gff.cpp -o gff.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 gff2.cpp -o gff2.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 gffset.cpp -o gffset.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 glix.cpp -o glix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 hash.cpp -o hash.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 iix.cpp -o iix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 log.cpp -o log.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 main.cpp -o main.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 makeannot.cpp -o makeannot.o hash.cpp: In function 'unsigned int Hash(const char*)': hash.cpp:78:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 78 | register ub1 *k = (ub1 *) key; | ^ hash.cpp:79:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 79 | register ub4 length = (ub4) strlen(key); /* the length of the key */ | ^~~~~~ hash.cpp:81:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register ub4 a,b,c,len; | ^ hash.cpp:81:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register ub4 a,b,c,len; | ^ hash.cpp:81:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register ub4 a,b,c,len; | ^ hash.cpp:81:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register ub4 a,b,c,len; | ^~~ hash.cpp: In function 'unsigned int Hash(const char*, unsigned int)': hash.cpp:123:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 123 | register ub1 *k = (ub1 *) key; | ^ hash.cpp:124:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 124 | register ub4 length = (ub4) strlen(key); /* the length of the key */ | ^~~~~~ hash.cpp:126:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | register ub4 a,b,c,len; | ^ hash.cpp:126:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | register ub4 a,b,c,len; | ^ hash.cpp:126:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | register ub4 a,b,c,len; | ^ hash.cpp:126:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | register ub4 a,b,c,len; | ^~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 mem.cpp -o mem.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 options.cpp -o options.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 progress.cpp -o progress.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 quit.cpp -o quit.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readafa.cpp -o readafa.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readhits.cpp -o readhits.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readmfa.cpp -o readmfa.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readmotif.cpp -o readmotif.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readreps.cpp -o readreps.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 readtrs.cpp -o readtrs.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 tan.cpp -o tan.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 tanmotif2fasta.cpp -o tanmotif2fasta.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 tr.cpp -o tr.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 trs.cpp -o trs.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 trs2fasta.cpp -o trs2fasta.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 usage.cpp -o usage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 utils.cpp -o utils.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 utils_linux.cpp -o utils_linux.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 utils_unix.cpp -o utils_unix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 utils_win32.cpp -o utils_win32.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 writecrisp.cpp -o writecrisp.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 writefasta.cpp -o writefasta.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 writeimages.cpp -o writeimages.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 writepiles.cpp -o writepiles.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 writetrs.cpp -o writetrs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/piler-0~20140707=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG=1 -o piler2 annot.o annotedge.o cons.o contigs.o crisp.o findcc.o gff.o gff2.o gffset.o glix.o hash.o iix.o log.o main.o makeannot.o mem.o options.o progress.o quit.o readafa.o readhits.o readmfa.o readmotif.o readreps.o readtrs.o tan.o tanmotif2fasta.o tr.o trs.o trs2fasta.o usage.o utils.o utils_linux.o utils_unix.o utils_win32.o writecrisp.o writefasta.o writeimages.o writepiles.o writetrs.o -Wl,-z,relro -Wl,-z,now -lm make[1]: Leaving directory '/build/piler-0~20140707' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/piler/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'piler' in '../piler_0~20140707-3_arm64.deb'. dpkg-deb: building package 'piler-dbgsym' in '../piler-dbgsym_0~20140707-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../piler_0~20140707-3_arm64.buildinfo dpkg-genchanges --build=binary -O../piler_0~20140707-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17926 and its subdirectories I: Current time: Fri May 10 01:37:52 -12 2024 I: pbuilder-time-stamp: 1715348272 Sat Apr 8 07:14:55 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Sat Apr 8 07:14:55 UTC 2023 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Sat Apr 8 07:15:48 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Sat Apr 8 07:15:48 UTC 2023 I: piler_0~20140707-3_arm64.changes: Format: 1.8 Date: Sun, 08 Nov 2020 08:42:04 +0100 Source: piler Binary: piler piler-dbgsym Architecture: arm64 Version: 0~20140707-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: piler - genomic repeat analysis Changes: piler (0~20140707-3) unstable; urgency=medium . [ Afif Elghraoui ] * Remove myself from Uploaders . [ Steffen Möller ] * Added ref to conda . [ Andreas Tille ] * Add myself to Uploaders * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. Checksums-Sha1: 862d3c823630487c9216ae9a088033d4fe45fb81 235892 piler-dbgsym_0~20140707-3_arm64.deb 350391751c9d132dafb504a102946a1bf3f4d6c5 5136 piler_0~20140707-3_arm64.buildinfo 44a53d84035801ea9b2b752eb398e2cd93783b54 37332 piler_0~20140707-3_arm64.deb Checksums-Sha256: 6ae3e89956b897a9344d3d8b5f228514ace669c36cadace2f67b300f237246e9 235892 piler-dbgsym_0~20140707-3_arm64.deb d7818864f5c4f848c34cb7953f48eec9e05942492206284a0ef256c2d7edea85 5136 piler_0~20140707-3_arm64.buildinfo d14e440f45f14a448b635ada56a9d7632ab01b2cc2939a5916f9491338516e23 37332 piler_0~20140707-3_arm64.deb Files: e9c691a6aef1a4941b170c5bc40c7e03 235892 debug optional piler-dbgsym_0~20140707-3_arm64.deb fa9b14d785454bcae701d2d41293ba32 5136 science optional piler_0~20140707-3_arm64.buildinfo 29f21b235f69434cfd94a5bd6f709fec 37332 science optional piler_0~20140707-3_arm64.deb Sat Apr 8 07:15:49 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/piler_0~20140707-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/piler_0~20140707-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/piler_0~20140707-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/b1/piler_0~20140707-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.XIHIeQaA/b2/piler_0~20140707-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.293s) 0.293s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Apr 8 07:15:50 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 8 07:15:50 UTC 2023 I: piler from bookworm built successfully and reproducibly on arm64. Sat Apr 8 07:15:52 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 8 07:15:52 UTC 2023 I: Submitting 8.0K b1/piler_0~20140707-3_arm64.buildinfo.asc Sat Apr 8 07:15:52 UTC 2023 I: Submitting 8.0K b2/piler_0~20140707-3_arm64.buildinfo.asc Sat Apr 8 07:15:53 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 8 07:15:53 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 8 07:15:53 UTC 2023 I: Removing signed piler_0~20140707-3_arm64.buildinfo.asc files: removed './b1/piler_0~20140707-3_arm64.buildinfo.asc' removed './b2/piler_0~20140707-3_arm64.buildinfo.asc'