Thu Apr 20 12:10:05 UTC 2023 I: starting to build pilercr/bookworm/arm64 on jenkins on '2023-04-20 12:09' Thu Apr 20 12:10:05 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/7273/console.log Thu Apr 20 12:10:05 UTC 2023 I: Downloading source for bookworm/pilercr=1.06+dfsg-5 --2023-04-20 12:10:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) [text/prs.lines.tag] Saving to: ‘pilercr_1.06+dfsg-5.dsc’ 0K . 100% 90.4M=0s 2023-04-20 12:10:06 (90.4 MB/s) - ‘pilercr_1.06+dfsg-5.dsc’ saved [1986/1986] Thu Apr 20 12:10:06 UTC 2023 I: pilercr_1.06+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pilercr Binary: pilercr Architecture: any Version: 1.06+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys Homepage: https://www.drive5.com/pilercr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pilercr Vcs-Git: https://salsa.debian.org/med-team/pilercr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: pilercr deb science optional arch=any Checksums-Sha1: ec00e5c5e116ca933b7e23d19f8a2a630352a788 80128 pilercr_1.06+dfsg.orig.tar.xz b5cb10848f0ea4cf91289569d6f757af38ac2486 8600 pilercr_1.06+dfsg-5.debian.tar.xz Checksums-Sha256: 377d88b76960483a33e4f620bab180e5f994b43e550961ca3e3ea3b77d64ccc9 80128 pilercr_1.06+dfsg.orig.tar.xz 4bcc78676e4663ada0e8f799cbecbd3d02f7be36a1edca83c2e0299b61824f3f 8600 pilercr_1.06+dfsg-5.debian.tar.xz Files: ba866a26a14562fb2e3c425ad601ca08 80128 pilercr_1.06+dfsg.orig.tar.xz d7857b8b6aa4bdd1517a1d0500aa5367 8600 pilercr_1.06+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaIaUUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFluQ/+JH4FmdIhA5NEt6Cqt2P25LP5PTMP kcN+VtGUlmLGN1L1qIr6y9Hk1KfEgSyv6AY9Rq+z8Y9nWRroghkhXvsQr87W2z4H EdZHXQjkixwRbqshaRZ4jGv3N7ipchrhkvXxlqc026FGGsEHD5laEZ9qBvMbkWSK Js+xxQ6sYPq/KR3PK2cXVAfoM1lgNM+E14oweAdqa56BKlt8W+Mv7YAUgXwFoI/2 g0LBb/oOYtahutL3LtSffXXlC1UjZ+QWLcQ079W6km4ZaWDIcf82XryqBSYyswRf 0WshkSlvvV6VoSMZFWjNgTUdS0smDV+bprfhKOeayNXZZ4bIceMoYUr21o91PwZG rfbSPZMVFwQv4kw3DI3lej4FmjY0wkTuXupgN1rBGxH+vQ0dZfeyXN+gxC2Y/Ah6 1wJV8s8n/5VTXWpfb7N4vDy6CEpg6bFvppDuuxloZ3PQjGxinmqLIx5yv/UQ/9EN 1HWW09WkdhmTQ9EW61nRecNThuYVQFE4Mq4suH8c9fH0Oz6yZbstcyrKgSdvfaJL HZEWBnwgectke4f9VPRgOMJFF1STR1Wg4JPZ4joUJ5fmkA3QVI4P8mcFuSI1uhxZ 4u9Fq+ByIRK3oRj/aSFtmC2a/1f93Nq5BwuF548slFxuM7S11YRf/oJ1bCko58wi qf8qINh8TWZY0D0= =uLsb -----END PGP SIGNATURE----- Thu Apr 20 12:10:06 UTC 2023 I: Checking whether the package is not for us Thu Apr 20 12:10:06 UTC 2023 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Apr 20 12:10:06 UTC 2023 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Apr 20 12:11:46 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 20 00:10:09 -12 2023 I: pbuilder-time-stamp: 1681992609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 15 20:28:21 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18281/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18281' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/pbuilderrc_z1ZJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 17 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18281/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 75.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB] Fetched 18.6 MB in 0s (44.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_arm64.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/pilercr-1.06+dfsg' dpkg-architecture -f -aarm64 -c dh_auto_build -- 'GPP=$(CXX)' make -j8 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/pilercr-1.06+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c info.cpp -o info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c log.cpp -o log.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c main.cpp -o main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o options.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -o params.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o seq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -ffile-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_arm64.deb'. dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18281 and its subdirectories I: Current time: Thu Apr 20 00:11:45 -12 2023 I: pbuilder-time-stamp: 1681992705 Thu Apr 20 12:11:47 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Thu Apr 20 12:11:47 UTC 2023 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Thu Apr 20 12:15:54 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Thu Apr 20 12:15:55 UTC 2023 I: pilercr_1.06+dfsg-5_arm64.changes: Format: 1.8 Date: Mon, 16 Aug 2021 13:54:23 +0530 Source: pilercr Binary: pilercr pilercr-dbgsym Architecture: arm64 Version: 1.06+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pilercr - software for finding CRISPR repeats Changes: pilercr (1.06+dfsg-5) unstable; urgency=medium . [ Shruti Sridhar ] * Team upload. * Add test data * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * d/tests/get-test-data: Add script for fetching data * d/docs: Install get-test-data script Checksums-Sha1: 19b79f22191802137a3772dc7da312534b83fa68 1162336 pilercr-dbgsym_1.06+dfsg-5_arm64.deb 8ac1cbff8b60477ebcc53ac79d204bf220c58f00 5214 pilercr_1.06+dfsg-5_arm64.buildinfo d7d0c27e9b765eaccbc7a0a4666cbd47299e9576 104828 pilercr_1.06+dfsg-5_arm64.deb Checksums-Sha256: 691691086acfd37edd57e00184050817668179271da26d6ddcd393a153760de7 1162336 pilercr-dbgsym_1.06+dfsg-5_arm64.deb 4507c2c54c272f4a024e5d19e8179e9887e46bffc51fd094fa64120e80a51473 5214 pilercr_1.06+dfsg-5_arm64.buildinfo ce9fa822b61495ef6f9a22ee9a8d8ee7f294a1334a1d4bd9592898248c65b850 104828 pilercr_1.06+dfsg-5_arm64.deb Files: 9cc375afecf8167bdc98455ccb1ad42e 1162336 debug optional pilercr-dbgsym_1.06+dfsg-5_arm64.deb fa3a03fa03d56cffca875a90ab320861 5214 science optional pilercr_1.06+dfsg-5_arm64.buildinfo 9efd05df0d8a6eb9d1fc465771d9f04c 104828 science optional pilercr_1.06+dfsg-5_arm64.deb Thu Apr 20 12:15:56 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/pilercr_1.06+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/pilercr_1.06+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/pilercr_1.06+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/b1/pilercr_1.06+dfsg-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.A6qBEhlP/b2/pilercr_1.06+dfsg-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.390s) 0.390s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 20 12:15:58 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 20 12:15:58 UTC 2023 I: pilercr from bookworm built successfully and reproducibly on arm64. Thu Apr 20 12:15:59 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 20 12:15:59 UTC 2023 I: Submitting 8.0K b1/pilercr_1.06+dfsg-5_arm64.buildinfo.asc Thu Apr 20 12:16:01 UTC 2023 I: Submitting 8.0K b2/pilercr_1.06+dfsg-5_arm64.buildinfo.asc Thu Apr 20 12:16:02 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 20 12:16:02 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 20 12:16:02 UTC 2023 I: Removing signed pilercr_1.06+dfsg-5_arm64.buildinfo.asc files: removed './b1/pilercr_1.06+dfsg-5_arm64.buildinfo.asc' removed './b2/pilercr_1.06+dfsg-5_arm64.buildinfo.asc'