Thu May 18 03:40:58 UTC 2023 I: starting to build prank/bookworm/arm64 on jenkins on '2023-05-18 03:40' Thu May 18 03:40:58 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/27186/console.log Thu May 18 03:40:58 UTC 2023 I: Downloading source for bookworm/prank=0.0.170427+dfsg-3 --2023-05-18 03:40:58-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/prank/prank_0.0.170427%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2035 (2.0K) [text/prs.lines.tag] Saving to: ‘prank_0.0.170427+dfsg-3.dsc’ 0K . 100% 224M=0s 2023-05-18 03:40:58 (224 MB/s) - ‘prank_0.0.170427+dfsg-3.dsc’ saved [2035/2035] Thu May 18 03:40:58 UTC 2023 I: prank_0.0.170427+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: prank Binary: prank Architecture: any Version: 0.0.170427+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Manuel Prinz , Andreas Tille Homepage: http://wasabiapp.org/software/prank/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/prank Vcs-Git: https://salsa.debian.org/med-team/prank.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: prank deb science optional arch=any Checksums-Sha1: 48d122657e11779b3792ba0f71f6272fc5fabc4b 102244 prank_0.0.170427+dfsg.orig.tar.xz 9ea6f6b255dbf3588d729cbd3302b1bc957be5e6 10952 prank_0.0.170427+dfsg-3.debian.tar.xz Checksums-Sha256: 49d7483db8a83d3fb8085778203f3114e122e181cc19fb2234916d5d34b8cac6 102244 prank_0.0.170427+dfsg.orig.tar.xz 6b1ede7b2cd1269c50a56377ebbb3d5d51cc3923dca6d01e2f7b9ea9ee99d9a6 10952 prank_0.0.170427+dfsg-3.debian.tar.xz Files: 72cc8c3bf77d15f411e9709a45253cb3 102244 prank_0.0.170427+dfsg.orig.tar.xz f49d579c0767bf48386b332761813b4a 10952 prank_0.0.170427+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+cJVQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFwvw//dxUb6MjLhxrSaK0FZ81huFOvp03kBcq+ AvVIvr0TDk61NKSTvWTOtEXVRb2Mq5jU+2UGKCYEciN62n9M2G9WM111HkZUgJVc jj4DZwIFUfOED8cAGMEOT4Kx0wunMtKIe5ErS/lA+qEk4PD8UWtlehMHq/IShn++ btsBzlrlPi9SvOZHRCRavkLNy0JxmgzIv7de3SmDiy0Op+iXSqL7LetCJiv8FAeE +tMdiWRgcfsMlPSRMPali2AC57jxY0ZYnGpCNR+efDczpTDGYcV0MF7zLm0PW5AA an9pgpuX4R0oulshB+h3VuvJqDXcQu/STmaVekKYw1IBvWQmaM4ToFhXJA5g9tkC B9JtQrlFrIFMfPSlGy9iiqC610UifN8gr/Vzi90GqCR7GqnDojGtakvmyJfKuH3N FNdzZEuRf57bu/9vOF8ETLLSOH4nwJs9BY0vXJvLf+qGHD6grTyOFW6h2HJQku3M Oiuj3jhe/qcqivwKjW9op/KfL4aZKKKsUyXcfEtOqEbHIT6Q8epO0YGZMq47kaBc VPwE3DZs4LjKBNJhHxBld/TSYeW3A0DahqGR3tDewaPd1pbO6HhxTYRfaQP54Amn z0RRbvzeEZ8nTdPklPG/5Db3ANv0K6+oiGXMXQz6udKvzmxtpBg5p8y9qUcqPttf ESOANFpTA/g= =czR6 -----END PGP SIGNATURE----- Thu May 18 03:40:58 UTC 2023 I: Checking whether the package is not for us Thu May 18 03:40:58 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Thu May 18 03:40:58 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Thu May 18 03:45:42 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 17 15:41:02 -12 2023 I: pbuilder-time-stamp: 1684381262 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [prank_0.0.170427+dfsg-3.dsc] I: copying [./prank_0.0.170427+dfsg.orig.tar.xz] I: copying [./prank_0.0.170427+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 30 02:38:12 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./prank_0.0.170427+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting prank in prank-0.0.170427+dfsg dpkg-source: info: unpacking prank_0.0.170427+dfsg.orig.tar.xz dpkg-source: info: unpacking prank_0.0.170427+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix-gcc6.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1887/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1887' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/pbuilderrc_YWEd --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/b1 --logfile b1/build.log prank_0.0.170427+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 16 22:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1887/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 0s (42.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/prank-0.0.170427+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prank_0.0.170427+dfsg-3_source.changes dpkg-buildpackage: info: source package prank dpkg-buildpackage: info: source version 0.0.170427+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/prank-0.0.170427+dfsg' # No distclean! See README.source ( cd src ; make clean ) make[2]: Entering directory '/build/prank-0.0.170427+dfsg/src' rm -f writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o rm -f *~ core *.core make[2]: Leaving directory '/build/prank-0.0.170427+dfsg/src' ( cd src ; rm -f prank prank.1 ) make[1]: Leaving directory '/build/prank-0.0.170427+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/prank-0.0.170427+dfsg' dh_auto_build --verbose cd src && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/prank-0.0.170427+dfsg/src' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o writefile.o writefile.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o treenode.o treenode.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o translatesequences.o translatesequences.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalnode.o terminalnode.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o site.o site.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o sequence.o sequence.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readnewick.o readnewick.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readfile.o readfile.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from site.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from translatesequences.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from terminalsequence.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from writefile.h:25, from writefile.cpp:27: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from terminalnode.h:23, from terminalnode.cpp:22: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from readnewick.h:29, from readnewick.cpp:26: treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from treenode.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readalignment.o readalignment.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwsite.o pwsite.cpp In file included from readalignment.h:28, from readalignment.cpp:23: treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o prank.o prank.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from pwhirschberg.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from readnewick.h:29, from progressivealignment.cpp:28: treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o postprobability.o postprobability.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from progressivealignment.h:30, from prank.cpp:28: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from postprobability.cpp:23: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from phylomatchscore.cpp:23: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o node.o node.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o intmatrix.o intmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hmmodel.o hmmodel.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hirschberg.o hirschberg.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from hmmodel.cpp:26: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from hirschberg.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o guidetree.o guidetree.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o fullprobability.o fullprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from guidetree.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o flmatrix.o flmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from fullprobability.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o eigen.o eigen.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o characterprobability.o characterprobability.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from characterprobability.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from ancestralsequence.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from ancestralnode.cpp:27: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ guidetree.cpp: In member function 'void GuideTree::computeTree(std::vector >*, std::vector >*, IntMatrix*)': guidetree.cpp:162:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 6 and 15 [-Wformat-overflow=] 162 | sprintf(prop,"%i to %i",i,j); | ^~ guidetree.cpp:162:30: note: directive argument in the range [1, 2147483647] 162 | sprintf(prop,"%i to %i",i,j); | ^~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from guidetree.cpp:21: In function 'int sprintf(char*, const char*, ...)', inlined from 'void GuideTree::computeTree(std::vector >*, std::vector >*, IntMatrix*)' at guidetree.cpp:162:24: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ancestralnode.cpp: In member function 'std::string AncestralNode::getThisAncCharactersAt(int)': ancestralnode.cpp:1517:1: warning: control reaches end of non-void function [-Wreturn-type] 1517 | } | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o check_version.o check_version.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp hmmodel.cpp: In member function 'void HMModel::readModel(const char*)': hmmodel.cpp:338:31: warning: '%i' directive writing between 1 and 11 bytes into a region of size 5 [-Wformat-overflow=] 338 | sprintf(str,"state%i",l); | ^~ hmmodel.cpp:338:25: note: directive argument in the range [-2147483647, 2147483646] 338 | sprintf(str,"state%i",l); | ^~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/fstream:41, from hmmodel.cpp:24: In function 'int sprintf(char*, const char*, ...)', inlined from 'void HMModel::readModel(const char*)' at hmmodel.cpp:338:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 17 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from exonerate_reads.cpp:10: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from mafft_alignment.cpp:6: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o bppancestors.o bppancestors.cpp pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.121211" --section=1 --name="PRANK" prank.1.pod >prank.1 In file included from ancestralnode.h:24, from bppancestors.h:24, from bppancestors.cpp:29: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ g++ -o prank writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/prank-0.0.170427+dfsg/src' make[1]: Leaving directory '/build/prank-0.0.170427+dfsg' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/prank/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/prank-0.0.170427+dfsg' dh_install src/prank /usr/bin dh_installman src/prank.1 make[1]: Leaving directory '/build/prank-0.0.170427+dfsg' dh_installdocs -O--sourcedirectory=src debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/prank-0.0.170427+dfsg' dh_installchangelogs VERSION_HISTORY make[1]: Leaving directory '/build/prank-0.0.170427+dfsg' dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'prank' in '../prank_0.0.170427+dfsg-3_arm64.deb'. dpkg-deb: building package 'prank-dbgsym' in '../prank-dbgsym_0.0.170427+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../prank_0.0.170427+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../prank_0.0.170427+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1887 and its subdirectories I: Current time: Wed May 17 15:45:40 -12 2023 I: pbuilder-time-stamp: 1684381540 Thu May 18 03:45:43 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Thu May 18 03:45:43 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Thu May 18 03:49:39 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Thu May 18 03:49:40 UTC 2023 I: prank_0.0.170427+dfsg-3_arm64.changes: Format: 1.8 Date: Fri, 30 Oct 2020 15:25:58 +0100 Source: prank Binary: prank prank-dbgsym Architecture: arm64 Version: 0.0.170427+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequenc Changes: prank (0.0.170427+dfsg-3) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Fix autopkgtest Checksums-Sha1: 8452fedb2267cc54b82f57d62e2be2a461713110 3636532 prank-dbgsym_0.0.170427+dfsg-3_arm64.deb 1dc816eeda9e39bbf5a5ddcaabc11d84d350311b 5182 prank_0.0.170427+dfsg-3_arm64.buildinfo 15a38e832082f37485dfea3150cf0acbe88b871f 319308 prank_0.0.170427+dfsg-3_arm64.deb Checksums-Sha256: 152340f820b1cea4aaa7c42d4305780ed70578475eeb9869e523b6cc862ec751 3636532 prank-dbgsym_0.0.170427+dfsg-3_arm64.deb be9544f9aaa5fcd913fbba293439485f5dd5588aafc426ae7c550ef5fce65cfa 5182 prank_0.0.170427+dfsg-3_arm64.buildinfo 4fbc54a8ecc3fa5547f0bd5dfe801dd0915a3c72b3e7e362df3b83589c360696 319308 prank_0.0.170427+dfsg-3_arm64.deb Files: 832a40fccf948c31024fc2ac2dad61e9 3636532 debug optional prank-dbgsym_0.0.170427+dfsg-3_arm64.deb d7985701449c7866b2fcf3ced79b89fb 5182 science optional prank_0.0.170427+dfsg-3_arm64.buildinfo 03cd7ad09e8282738295c346428158c4 319308 science optional prank_0.0.170427+dfsg-3_arm64.deb Thu May 18 03:49:41 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/prank_0.0.170427+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/prank_0.0.170427+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/prank_0.0.170427+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/b1/prank_0.0.170427+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/b2/prank_0.0.170427+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.418s) 0.418s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.071s) 0.071s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Thu May 18 03:49:42 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 18 03:49:42 UTC 2023 I: prank from bookworm built successfully and reproducibly on arm64. Thu May 18 03:49:46 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 18 03:49:46 UTC 2023 I: Submitting 8.0K b1/prank_0.0.170427+dfsg-3_arm64.buildinfo.asc Thu May 18 03:49:46 UTC 2023 I: Submitting 8.0K b2/prank_0.0.170427+dfsg-3_arm64.buildinfo.asc Thu May 18 03:49:48 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 18 03:49:48 UTC 2023 I: Done submitting .buildinfo files. Thu May 18 03:49:48 UTC 2023 I: Removing signed prank_0.0.170427+dfsg-3_arm64.buildinfo.asc files: removed './b1/prank_0.0.170427+dfsg-3_arm64.buildinfo.asc' removed './b2/prank_0.0.170427+dfsg-3_arm64.buildinfo.asc'