Mon Apr 10 10:26:14 UTC 2023 I: starting to build python-csb/bookworm/arm64 on jenkins on '2023-04-10 10:26'
Mon Apr 10 10:26:14 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/26959/console.log
Mon Apr 10 10:26:14 UTC 2023 I: Downloading source for bookworm/python-csb=1.2.5+dfsg-8
--2023-04-10 10:26:14-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-csb/python-csb_1.2.5%2bdfsg-8.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2253 (2.2K) [text/prs.lines.tag]
Saving to: ‘python-csb_1.2.5+dfsg-8.dsc’
0K .. 100% 7.80M=0s
2023-04-10 10:26:14 (7.80 MB/s) - ‘python-csb_1.2.5+dfsg-8.dsc’ saved [2253/2253]
Mon Apr 10 10:26:14 UTC 2023 I: python-csb_1.2.5+dfsg-8.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-csb
Binary: python3-csb, csb
Architecture: all
Version: 1.2.5+dfsg-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tomas Di Domenico <tdido@tdido.com.ar>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/csb-toolbox/CSB
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/python-csb
Vcs-Git: https://salsa.debian.org/med-team/python-csb.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools
Package-List:
csb deb science optional arch=all
python3-csb deb python optional arch=all
Checksums-Sha1:
bc4b0b5a5f2c4522bb1654d63aad73c62bf563e1 2999651 python-csb_1.2.5+dfsg.orig.tar.gz
3515f1676e943af6ec029792f1ebe9af1613807a 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz
Checksums-Sha256:
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531f869033b25c8d6dac47b8329e9499fdb8969f8664a72efe84f35aa7e34fac 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz
Files:
83c9fb8f55cea112073690299c568f08 2999651 python-csb_1.2.5+dfsg.orig.tar.gz
a5d045bb0a3f023839d939c899cc296a 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz
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Mon Apr 10 10:26:14 UTC 2023 I: Checking whether the package is not for us
Mon Apr 10 10:26:14 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net.
Mon Apr 10 10:26:14 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net.
Mon Apr 10 10:34:31 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Apr 9 22:26:17 -12 2023
I: pbuilder-time-stamp: 1681122377
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-csb_1.2.5+dfsg-8.dsc]
I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz]
I: copying [./python-csb_1.2.5+dfsg-8.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Dec 6 03:39:00 2022 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-csb_1.2.5+dfsg-8.dsc: no acceptable signature found
dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg
dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz
dpkg-source: info: unpacking python-csb_1.2.5+dfsg-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying exclude_online_tests.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying fix_setup.patch
dpkg-source: info: applying avoid-multiple-namespace.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/11557/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='11557'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/pbuilderrc_rOnJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-8.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Apr 7 22:25 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/11557/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-scipy; however:
Package python3-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-pyparsing{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs
0 packages upgraded, 142 newly installed, 0 to remove and 0 not upgraded.
Need to get 111 MB of archives. After unpacking 604 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1 [26.0 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1 [9012 B]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1 [26.0 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [973 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtk8.6 arm64 8.6.13-2 [729 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1 [540 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 blt arm64 2.5.3+dfsg-4.1 [14.9 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 fonts-lyx all 2.3.7-1 [186 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 libopenblas0-pthread arm64 0.3.21+ds-4 [4532 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [24.9 kB]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 libopenblas0 arm64 0.3.21+ds-4 [32.6 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 libopenblas-pthread-dev arm64 0.3.21+ds-4 [3169 kB]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 libopenblas-dev arm64 0.3.21+ds-4 [44.9 kB]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1 [9252 B]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1 [1064 B]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 libqhull-r8.0 arm64 2020.2-5 [230 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.1 [99.1 kB]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.1 [109 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 libxsimd-dev arm64 8.1.0-7 [88.8 kB]
Get: 105 http://deb.debian.org/debian bookworm/main arm64 libxslt1.1 arm64 1.1.35-1 [231 kB]
Get: 106 http://deb.debian.org/debian bookworm/main arm64 python-matplotlib-data all 3.6.3-1 [2744 kB]
Get: 107 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1 [1060 B]
Get: 108 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB]
Get: 109 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1 [26.2 kB]
Get: 110 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1 [1068 B]
Get: 111 http://deb.debian.org/debian bookworm/main arm64 python3-appdirs all 1.4.4-3 [13.0 kB]
Get: 112 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB]
Get: 113 http://deb.debian.org/debian bookworm/main arm64 python3-gast all 0.5.2-2 [9364 B]
Get: 114 http://deb.debian.org/debian bookworm/main arm64 python3-beniget all 0.4.1-3 [9920 B]
Get: 115 http://deb.debian.org/debian bookworm/main arm64 python3-brotli arm64 1.0.9-2+b6 [281 kB]
Get: 116 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 117 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB]
Get: 118 http://deb.debian.org/debian bookworm/main arm64 python3-contourpy arm64 1.0.7-1+b1 [154 kB]
Get: 119 http://deb.debian.org/debian bookworm/main arm64 python3-cycler all 0.11.0-1 [8020 B]
Get: 120 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB]
Get: 121 http://deb.debian.org/debian bookworm/main arm64 python3-dateutil all 2.8.2-2 [78.3 kB]
Get: 122 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB]
Get: 123 http://deb.debian.org/debian bookworm/main arm64 python3-ply all 3.11-5 [65.8 kB]
Get: 124 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB]
Get: 125 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB]
Get: 126 http://deb.debian.org/debian bookworm/main arm64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get: 127 http://deb.debian.org/debian bookworm/main arm64 python3-mpmath all 1.2.1-2 [418 kB]
Get: 128 http://deb.debian.org/debian bookworm/main arm64 python3-sympy all 1.11.1-1 [4358 kB]
Get: 129 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-1 [32.1 kB]
Get: 130 http://deb.debian.org/debian bookworm/main arm64 python3-fs all 2.4.16-2 [95.2 kB]
Get: 131 http://deb.debian.org/debian bookworm/main arm64 python3-lxml arm64 4.9.2-1+b1 [1074 kB]
Get: 132 http://deb.debian.org/debian bookworm/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b2 [25.0 kB]
Get: 133 http://deb.debian.org/debian bookworm/main arm64 unicode-data all 15.0.0-1 [7984 kB]
Get: 134 http://deb.debian.org/debian bookworm/main arm64 python3-fonttools arm64 4.38.0-1+b1 [990 kB]
Get: 135 http://deb.debian.org/debian bookworm/main arm64 python3-kiwisolver arm64 1.4.4-1+b1 [55.4 kB]
Get: 136 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB]
Get: 137 http://deb.debian.org/debian bookworm/main arm64 python3-tk arm64 3.11.2-2 [97.7 kB]
Get: 138 http://deb.debian.org/debian bookworm/main arm64 python3-pil.imagetk arm64 9.4.0-1.1+b1 [74.4 kB]
Get: 139 http://deb.debian.org/debian bookworm/main arm64 python3-pyparsing all 3.0.9-1 [138 kB]
Get: 140 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB]
Get: 141 http://deb.debian.org/debian bookworm/main arm64 python3-matplotlib arm64 3.6.3-1+b1 [6774 kB]
Get: 142 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 111 MB in 2s (45.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:arm64.
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Setting up libpython3.11-minimal:arm64 (3.11.2-6) ...
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Unpacking readline-common (8.2-1.3) ...
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Setting up python3-minimal (3.11.2-1) ...
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Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
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Selecting previously unselected package libpng16-16:arm64.
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Unpacking libboost-dev:arm64 (1.74.0.3) ...
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Unpacking libdeflate0:arm64 (1.14-1) ...
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Setting up python3.11-dev (3.11.2-6) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-ply (3.11-5) ...
Setting up python3-gast (0.5.2-2) ...
Setting up python3-all (3.11.2-1) ...
Setting up python3-tk:arm64 (3.11.2-2) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-beniget (0.4.1-3) ...
Setting up libpython3-all-dev:arm64 (3.11.2-1) ...
Setting up python3-dev (3.11.2-1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-contourpy (1.0.7-1+b1) ...
Setting up python3-all-dev (3.11.2-1) ...
Setting up python3-pythran (0.11.0+ds-7) ...
Setting up python3-scipy (1.10.1-2) ...
Setting up python3-pil:arm64 (9.4.0-1.1+b1) ...
Setting up python3-pil.imagetk:arm64 (9.4.0-1.1+b1) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Setting up python3-fonttools (4.38.0-1+b1) ...
Setting up python3-matplotlib (3.6.3-1+b1) ...
Processing triggers for libc-bin (2.36-8) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes
dpkg-buildpackage: info: source package python-csb
dpkg-buildpackage: info: source version 1.2.5+dfsg-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
/build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="?
if ex.code is 0:
/build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if ex.code is not 0:
/build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="?
if Shell.run([sc, 'help']).code is 0:
Warning: 'classifiers' should be a list, got type 'tuple'
running clean
removing '/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build' (and everything under it)
'build/bdist.linux-arm64' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="?
if ex.code is 0:
/build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if ex.code is not 0:
/build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="?
if Shell.run([sc, 'help']).code is 0:
Warning: 'classifiers' should be a list, got type 'tuple'
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
Warning: 'classifiers' should be a list, got type 'tuple'
running build
running build_py
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb
copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb
copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test
copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test
copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech
copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech
copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech
copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric
copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric
copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io
copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io
copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io
copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core
copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio
copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases
copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io
copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core
copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio
copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers
copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils
copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure
copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence
copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr
copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io
copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm
copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments
copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment
copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb
copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif
copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck
copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe
copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc
copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred
copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta
copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs
copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans
copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers
copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils
copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure
copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence
copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence
copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr
copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm
copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm
copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments
copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments
copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments
running egg_info
creating csb.egg-info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
writing manifest file 'csb.egg-info/SOURCES.txt'
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.bio.nmr.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'csb.bio.nmr.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'csb.bio.nmr.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'csb.bio.nmr.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.test.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'csb.test.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'csb.test.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'csb.test.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
copying csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data
creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/python-csb-1.2.5+dfsg'
LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \
--test-args='set -e; \
cd {build_dir}; \
PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2'
I: pybuild base:240: set -e; \
cd /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build; \
PYTHONPATH=/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build PYTHONWARNINGS=d python3.11 csb/test/app.py --generated-resources /tmp --verbosity 2
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses
import imp
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence '\d'
m = re.search('(\d+)\D+(\d+)', line).groups()
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence '\s'
seq = re.sub('\s+', '', ''.join(lines[1:]))
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence '\-'
pattern = re.compile('^[A-Z\-]\s[0-9]+\s+')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence '\s'
string = ''.join(re.split('\s+', string))
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence '\s'
conf_string = ''.join(re.split('\s+', conf_string))
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence '\w'
self._residues += re.sub('([^\w\-\.])+', '', string)
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence '\d'
res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line)
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'>
Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'>
Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence '\s'
"""
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence '\s'
input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence '\d'
residues = re.compile('(\d+)\s*residues\s\|')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence '\s'
ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' +
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence '\s'
'%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' +
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence '\s'
'%\s*gener\s*(\d+\.\d+)%\s*disall')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence '\s'
labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence '\s'
labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence '\s'
bad_contacts = re.compile('Bad\scontacts:\s*(\d+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence '\s'
g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' +
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence '\s'
'\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence '\s'
re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence '\s'
re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence '\s'
re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence '\s'
re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence '\S'
re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)')
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="?
self.assertFalse(self.enum.C is 66)
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence '\w'
"([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"]
testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'>
return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok
testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok
testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok
testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok
testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok
testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok
testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok
testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok
testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok
testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok
testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok
testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok
testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok
testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok
testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok
testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok
testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok
testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok
testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok
testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok
testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok
testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok
testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok
testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok
testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok
testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok
testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok
testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsdsrg8l1' mode='r' encoding='UTF-8'>
new = open(tmp.name).read().rstrip()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok
testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok
testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'>
for line in open(file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok
testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok
testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok
testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok
testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok
testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok
testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok
testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok
testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok
testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok
testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok
testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok
testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok
testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok
testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok
testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok
testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok
testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok
testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok
testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok
testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok
testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok
testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok
testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok
testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok
testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok
testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok
testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok
testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok
testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok
testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok
testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok
testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok
testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok
testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok
testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok
testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok
testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok
testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok
testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok
testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok
testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok
testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok
testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok
testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok
testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok
testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok
testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok
testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok
testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok
testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok
testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok
testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok
runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok
testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok
testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok
testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok
testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok
testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok
testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok
testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit)
Test creating an empty L{Clans} instance. ... ok
testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok
testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok
testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok
testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok
testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok
testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok
testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok
testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'>
self._clans_instance.filename)).read().split('\n', 1)[1]
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok
testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok
testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok
testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile)
Test parsing of a small dummy file with known values ... ok
testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter)
Test whether the premature (before parsing) access to clans_instance is ... ok
testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok
testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok
testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok
testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok
testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok
testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok
testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok
testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok
testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'>
content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok
testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok
testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok
testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'>
content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv28pkd2y' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7at96_m8' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu19iv_7b' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgwwxyvcw' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdjge9eff' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8rs9r_cs' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok
testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok
testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok
testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok
testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok
testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok
testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok
testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkq0d7z30' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp29ci4co5' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok
testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'>
self.data = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok
testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'>
break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'>
break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok
testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'>
content = open(filename).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok
testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist)
@see: [CSB 0000056] ... ok
testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'>
for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_pgia8d2' mode='r' encoding='UTF-8'>
break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok
testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok
testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M)
@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6z1hslh6' mode='r' encoding='UTF-8'>
generated = open(tmp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
array = numpy.fromstring(map_data, numpy.float32, count)
ok
testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok
testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok
testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok
testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'>
content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok
testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok
testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'>
content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'>
content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok
testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok
testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting)
@see: [CSB 0000067] ... ok
testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'>
break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok
testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok
testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... ok
testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok
testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok
testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok
testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok
testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... ok
testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok
testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok
testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok
testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok
runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok
testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok
testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok
testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok
testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok
testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok
testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok
testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok
testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping)
@see: [CSB 0000031] ... ok
testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping)
@see: [CSB 0000052] ... ok
testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok
testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok
testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok
testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok
testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok
testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok
testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok
testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok
testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok
testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'>
break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing)
@see: [CSB 0000045] ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok
testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok
testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok
testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok
testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok
testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'>
for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok
testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok
testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok
testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok
testGetAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok
testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok
testNegative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok
testPositive (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok
testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok
testAtomContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok
testAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok
testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok
testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok
testCompare (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok
testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok
testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok
testContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok
testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok
testCutoff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok
testPosition (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok
testResidueContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok
testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok
testFromAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok
testFromShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok
testFromString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok
testGetAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok
testMatch (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok
testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok
testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok
testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok
testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok
testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok
testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok
testIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok
testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok
testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok
testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok
testDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok
testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok
testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok
testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok
testLen (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok
testMaxIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok
testMinIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok
testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok
testNumProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok
testProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok
testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok
testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok
testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'>
self.a3m = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok
testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok
testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok
testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok
testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok
testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok
testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok
testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok
testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok
testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok
testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok
testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok
testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok
testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok
testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok
testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0po7f2xc' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpesr84395' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok
testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok
testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok
testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok
testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok
testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok
testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok
testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbs_dqw77' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpakml06sh' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok
testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok
testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok
testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok
testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok
testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok
testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok
testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgaq4oxoa' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpajigjofk' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok
testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok
testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok
testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok
testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok
testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok
testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok
testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok
testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok
testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok
testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok
testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok
testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok
testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok
testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok
testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok
testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplajcevld' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcka3pyse' mode='r' encoding='UTF-8'>
self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok
testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok
testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok
testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok
testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok
testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok
testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok
testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok
testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok
testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok
testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok
testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok
testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok
testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok
testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok
testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom)
@see: [CSB 0000122] ... ok
testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation)
@see: [CSB 0000030] ... ok
testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone)
@see: [CSB 0000029] ... ok
testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates)
Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines'
testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'>
return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok
testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok
testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok
testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok
testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok
testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok
testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok
testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok
testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok
testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok
testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok
testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok
testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok
testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok
testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok
testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok
testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok
testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok
testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok
testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok
testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok
testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok
testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok
testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok
testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok
testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok
testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok
testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok
testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok
testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok
testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok
testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok
testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok
testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok
testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok
testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok
testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok
testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok
testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok
testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok
testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok
testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok
testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok
testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok
testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok
testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok
testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok
testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok
testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok
testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok
testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok
testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkgfc6qpd' mode='r' encoding='UTF-8'>
self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvg98prff' mode='r' encoding='UTF-8'>
self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok
testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok
testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok
testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok
testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose)
@see: [CSB 0000058] ... ok
testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok
testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok
testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok
testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok
testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok
testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok
testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok
testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok
testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok
testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok
testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok
testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok
testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok
testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok
testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok
testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok
testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok
testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok
testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok
testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok
testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok
testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok
runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead.
self.assertNotEquals(id(obj), id(copy))
ok
testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok
testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok
testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok
testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok
testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok
testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok
testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok
testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testComparison) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok
testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok
testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok
testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok
testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok
testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok
testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok
testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok
testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok
testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok
testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok
testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok
testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok
testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok
runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok
runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok
testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcx1w1g9a' mode='r' encoding='UTF-8'>
content = open(self.temp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok
testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok
testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok
testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok
testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... ok
testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok
testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok
testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok
testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok
testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok
testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok
testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok
testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf2hhrwpy' mode='r' encoding='UTF-8'>
self.assertEqual(open(temp.name).read(), 'D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe1ywowsl' mode='r' encoding='UTF-8'>
self.assertEqual(open(temp.name).read(), 'A/B/C/')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf478bgde' mode='r' encoding='UTF-8'>
self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok
testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok
testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok
testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok
testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok
testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok
testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok
testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok
testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok
testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'>
self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf55qp0fp' mode='r' encoding='UTF-8'>
self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok
testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok
testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok
testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok
testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok
testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok
testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok
testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok
testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok
testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok
testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok
testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgw5uswpx' mode='r' encoding='UTF-8'>
self.assertEqual(data, open(temp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok
testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok
testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok
testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok
testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific'
testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific'
testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles)
r526 ... ok
testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok
testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok
testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok
testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok
testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok
testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok
testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok
testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok
testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok
testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok
testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok
testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok
testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok
testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok
testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok
testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok
testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok
testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok
testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok
testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok
testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok
testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok
testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok
testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok
testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok
testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok
testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow'
testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok
testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok
testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok
testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok
testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok
testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok
testParameterValidation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation)
@see: [CSB 0000132] ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok
testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok
testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok
testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok
testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok
testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok
testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok
testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok
testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok
testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok
testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok
testConstrucor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok
testFindBaseParameter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok
testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok
testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok
testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok
testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok
testAssignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok
testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok
testParameterChaining (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok
testProperties (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok
testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok
testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok
testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok
testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok
testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok
testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok
testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok
testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok
testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok
testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok
testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok
testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite.
initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)),
/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite.
momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d),
ok
testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok
testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok
testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.'
testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok
testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok
testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok
testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.'
testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok
testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok
testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok
testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok
testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok
testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok
testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok
testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok
testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok
testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok
testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok
testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok
testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future.
ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
ok
testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ok
testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ok
testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ok
testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok
testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok
testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok
testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok
testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok
----------------------------------------------------------------------
Ran 697 tests in 346.818s
OK (skipped=6)
make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-csb-1.2.5+dfsg/debian/python3-csb
Warning: 'classifiers' should be a list, got type 'tuple'
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.bio.nmr.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'csb.bio.nmr.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'csb.bio.nmr.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'csb.bio.nmr.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.test.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'csb.test.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'csb.test.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'csb.test.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running install_lib
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/whatif.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/procheck.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/noe.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/mrc.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/cs.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/dssp.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/fasta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/clans.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/hhpred.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/tsv.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech
creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb
copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfit.py to bfit.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfite.py to bfite.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/csfrag.py to csfrag.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/embd.py to embd.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/helloworld.py to helloworld.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/precision.py to precision.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/promix.py to promix.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/clans.py to clans.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/cs.py to cs.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/dssp.py to dssp.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/fasta.py to fasta.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/mrc.py to mrc.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/noe.py to noe.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/procheck.py to procheck.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/psipred.py to psipred.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/svg.py to svg.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/vasco.py to vasco.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/whatif.py to whatif.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/plots.py to plots.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/tsv.py to tsv.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/integrators.py to integrators.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/ars.py to ars.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/maxent.py to maxent.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/rand.py to rand.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/wham.py to wham.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-311.pyc
/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="?
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/app.py to app.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/build.py to build.cpython-311.pyc
/usr/lib/python3.11/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="?
/usr/lib/python3.11/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="?
/usr/lib/python3.11/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="?
running install_egg_info
Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb-1.2.5.egg-info
Skipping SOURCES.txt
running install_scripts
Installing csb-bfit script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-bfite script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-buildhmm script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-csfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-embd script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhsearch script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-precision script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-promix script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-test script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/build/python-csb-1.2.5+dfsg'
dh_install
mkdir -p debian/csb/usr
mv debian/python3-csb/usr/bin debian/csb/usr
make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-8_all.deb'.
dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-8_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-8_arm64.buildinfo
dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-8_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/11557 and its subdirectories
I: Current time: Sun Apr 9 22:34:29 -12 2023
I: pbuilder-time-stamp: 1681122869
Mon Apr 10 10:34:32 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net.
Mon Apr 10 10:34:32 UTC 2023 I: Preparing to do remote build '2' on codethink15-arm64.debian.net.
Mon Apr 10 10:42:24 UTC 2023 I: Deleting $TMPDIR on codethink15-arm64.debian.net.
Mon Apr 10 10:42:25 UTC 2023 I: python-csb_1.2.5+dfsg-8_arm64.changes:
Format: 1.8
Date: Tue, 06 Dec 2022 16:29:02 +0100
Source: python-csb
Binary: csb python3-csb
Architecture: all
Version: 1.2.5+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
csb - Computational Structural Biology Toolbox (CSB)
python3-csb - Python framework for structural bioinformatics (Python3 version)
Changes:
python-csb (1.2.5+dfsg-8) unstable; urgency=medium
.
* Fix watch file
* Standards-Version: 4.6.1 (routine-update)
Checksums-Sha1:
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01d4b5c174663e15ed593b96e3d3bfae1ad510c3 8565 python-csb_1.2.5+dfsg-8_arm64.buildinfo
e3df08096e8eb3fff4a52f7688f560db7e13356e 2174292 python3-csb_1.2.5+dfsg-8_all.deb
Checksums-Sha256:
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02bbd2044b28f0fa83c11048a79ccdfbd36b66c2f77f9bb139a6e91d02de816e 2174292 python3-csb_1.2.5+dfsg-8_all.deb
Files:
988641bac2623500e678f0fe3f832c13 12480 science optional csb_1.2.5+dfsg-8_all.deb
cd8d674879a2212a1357fc2b3ee957cf 8565 science optional python-csb_1.2.5+dfsg-8_arm64.buildinfo
2bfdced480460c9efff2a9ee1c4c8fd5 2174292 python optional python3-csb_1.2.5+dfsg-8_all.deb
Mon Apr 10 10:42:26 UTC 2023 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/python-csb_1.2.5+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/python-csb_1.2.5+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/python-csb_1.2.5+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/b1/python-csb_1.2.5+dfsg-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/b2/python-csb_1.2.5+dfsg-8_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.344s)
0.343s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.037s)
0.037s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.001s)
0.001s 1 call specialize
Mon Apr 10 10:42:27 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Mon Apr 10 10:42:27 UTC 2023 I: python-csb from bookworm built successfully and reproducibly on arm64.
Mon Apr 10 10:42:30 UTC 2023 I: Submitting .buildinfo files to external archives:
Mon Apr 10 10:42:30 UTC 2023 I: Submitting 12K b1/python-csb_1.2.5+dfsg-8_arm64.buildinfo.asc
Mon Apr 10 10:42:32 UTC 2023 I: Submitting 12K b2/python-csb_1.2.5+dfsg-8_arm64.buildinfo.asc
Mon Apr 10 10:42:33 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Apr 10 10:42:33 UTC 2023 I: Done submitting .buildinfo files.
Mon Apr 10 10:42:33 UTC 2023 I: Removing signed python-csb_1.2.5+dfsg-8_arm64.buildinfo.asc files:
removed './b1/python-csb_1.2.5+dfsg-8_arm64.buildinfo.asc'
removed './b2/python-csb_1.2.5+dfsg-8_arm64.buildinfo.asc'