Mon Jan 8 05:39:19 UTC 2024 I: starting to build python-pyfaidx/bookworm/arm64 on jenkins on '2024-01-08 05:38'
Mon Jan 8 05:39:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/19775/console.log
Mon Jan 8 05:39:19 UTC 2024 I: Downloading source for bookworm/python-pyfaidx=0.7.1-2
--2024-01-08 05:39:20-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pyfaidx/python-pyfaidx_0.7.1-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2514 (2.5K) [text/prs.lines.tag]
Saving to: ‘python-pyfaidx_0.7.1-2.dsc’
0K .. 100% 343M=0s
2024-01-08 05:39:20 (343 MB/s) - ‘python-pyfaidx_0.7.1-2.dsc’ saved [2514/2514]
Mon Jan 8 05:39:20 UTC 2024 I: python-pyfaidx_0.7.1-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-pyfaidx
Binary: python3-pyfaidx, python-pyfaidx-examples
Architecture: all
Version: 0.7.1-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/mdshw5/pyfaidx
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/python-pyfaidx
Vcs-Git: https://salsa.debian.org/med-team/python-pyfaidx.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all, python3-biopython, python3-numpy, python3-pytest, tabix
Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-coverage, python3-setuptools, python3-biopython, python3-numpy <!nocheck>, python3-pkg-resources <!nocheck>, python3-pytest <!nocheck>, python3-six <!nocheck>, python3-mock <!nocheck>, samtools <!nocheck>, tabix <!nocheck>
Package-List:
python-pyfaidx-examples deb python optional arch=all
python3-pyfaidx deb python optional arch=all
Checksums-Sha1:
0f9f582249396522714546c739c7df0b0244e23d 96743 python-pyfaidx_0.7.1.orig.tar.gz
69f1151890503805c8652ea43dbe76debf2aa383 6848 python-pyfaidx_0.7.1-2.debian.tar.xz
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b2bbe8d8a9e551a77f2b0957c280d6bc992f0c0e7ba9f7f8ffbcd8ef6ea06526 6848 python-pyfaidx_0.7.1-2.debian.tar.xz
Files:
cc9bf00bf7472fd771e26cccd676c5cf 96743 python-pyfaidx_0.7.1.orig.tar.gz
7b4fc1f041af61ab2369941916e7c713 6848 python-pyfaidx_0.7.1-2.debian.tar.xz
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Mon Jan 8 05:39:20 UTC 2024 I: Checking whether the package is not for us
Mon Jan 8 05:39:20 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net.
Mon Jan 8 05:39:20 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net.
Mon Jan 8 05:41:13 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Jan 7 17:39:22 -12 2024
I: pbuilder-time-stamp: 1704692362
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-pyfaidx_0.7.1-2.dsc]
I: copying [./python-pyfaidx_0.7.1.orig.tar.gz]
I: copying [./python-pyfaidx_0.7.1-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Nov 25 21:57:25 2022
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.7.1-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.7.1
dpkg-source: info: unpacking python-pyfaidx_0.7.1.orig.tar.gz
dpkg-source: info: unpacking python-pyfaidx_0.7.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying test-locale-to-c.patch
dpkg-source: info: applying remove-ignore-docstring.patch
dpkg-source: info: applying no_setuptools-scm.patch
dpkg-source: info: applying fix-pkg-resources.patch
dpkg-source: info: applying biopython-1.80.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2907629/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='741d765f24f44a3da13f9a09e7a4901d'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2907629'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/pbuilderrc_yex4 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/b1 --logfile b1/build.log python-pyfaidx_0.7.1-2.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.104:3128'
I: uname -a
Linux codethink02-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux
I: ls -l /bin
total 7104
-rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 67664 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 68536 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 68632 Sep 20 2022 chown
-rwxr-xr-x 1 root root 200264 Sep 20 2022 cp
-rwxr-xr-x 1 root root 133640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 134144 Sep 20 2022 date
-rwxr-xr-x 1 root root 134248 Sep 20 2022 dd
-rwxr-xr-x 1 root root 134888 Sep 20 2022 df
-rwxr-xr-x 1 root root 200440 Sep 20 2022 dir
-rwxr-xr-x 1 root root 141720 Mar 23 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 68408 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 68384 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 134584 Mar 23 2023 findmnt
-rwsr-xr-x 1 root root 67744 Mar 23 2023 fusermount
-rwxr-xr-x 1 root root 198880 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 93752 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 68664 Sep 20 2022 ln
-rwxr-xr-x 1 root root 69208 Mar 23 2023 login
-rwxr-xr-x 1 root root 200440 Sep 20 2022 ls
-rwxr-xr-x 1 root root 264360 Mar 23 2023 lsblk
-rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 67752 Mar 23 2023 more
-rwsr-xr-x 1 root root 67744 Mar 23 2023 mount
-rwxr-xr-x 1 root root 67744 Mar 23 2023 mountpoint
-rwxr-xr-x 1 root root 134728 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 68592 Sep 20 2022 rm
-rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts
-rwxr-xr-x 1 root root 134536 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 134088 Sep 20 2022 stty
-rwsr-xr-x 1 root root 133312 Mar 23 2023 su
-rwxr-xr-x 1 root root 68448 Sep 20 2022 sync
-rwxr-xr-x 1 root root 539896 Apr 6 2023 tar
-rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile
-rwxr-xr-x 1 root root 134160 Sep 20 2022 touch
-rwxr-xr-x 1 root root 68384 Sep 20 2022 true
-rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server
-rwsr-xr-x 1 root root 67744 Mar 23 2023 umount
-rwxr-xr-x 1 root root 68416 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 133312 Mar 23 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/2907629/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-coverage, python3-setuptools, python3-biopython, python3-numpy, python3-pkg-resources, python3-pytest, python3-six, python3-mock, samtools, tabix
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18171 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-coverage; however:
Package python3-coverage is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however:
Package python3-pkg-resources is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-six; however:
Package python3-six is not installed.
pbuilder-satisfydepends-dummy depends on python3-mock; however:
Package python3-mock is not installed.
pbuilder-satisfydepends-dummy depends on samtools; however:
Package samtools is not installed.
pbuilder-satisfydepends-dummy depends on tabix; however:
Package tabix is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-coverage{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-mock{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbr{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs
0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded.
Need to get 55.9 MB of archives. After unpacking 204 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 mailcap all 3.70+nmu1 [32.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 mime-support all 3.66 [10.9 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.3~deb12u1 [619 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130+deb12u1 [104 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 libfontenc1 arm64 1:1.1.4-1 [23.6 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1+deb12u1 [68.3 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-10+deb12u4 [361 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-4 [93.9 kB]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-2 [175 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.2+deb12u1 [260 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-6+deb12u1 [301 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.2+deb12u1 [99.3 kB]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.2+deb12u1 [109 kB]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 python3-renderpm arm64 3.6.12-1+b1 [73.5 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab-accel arm64 3.6.12-1+b1 [38.4 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab all 3.6.12-1 [564 kB]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 python3-biopython arm64 1.80+dfsg-4+b1 [1580 kB]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 python3-coverage arm64 6.5.0+dfsg1-2+b1 [153 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB]
Get: 105 http://deb.debian.org/debian bookworm/main arm64 python3-pbr all 5.10.0-2 [61.4 kB]
Get: 106 http://deb.debian.org/debian bookworm/main arm64 python3-mock all 4.0.3-4 [64.0 kB]
Get: 107 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 108 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB]
Get: 109 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 110 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB]
Get: 111 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB]
Get: 112 http://deb.debian.org/debian bookworm/main arm64 samtools arm64 1.16.1-1 [580 kB]
Get: 113 http://deb.debian.org/debian bookworm/main arm64 tabix arm64 1.16+ds-3 [427 kB]
Fetched 55.9 MB in 1s (67.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:arm64.
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Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ...
Selecting previously unselected package libexpat1:arm64.
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Unpacking libexpat1:arm64 (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
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Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:arm64 (3.11.2-6) ...
Setting up libexpat1:arm64 (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
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Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ...
Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
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Unpacking media-types (10.0.0) ...
Selecting previously unselected package mailcap.
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Unpacking mailcap (3.70+nmu1) ...
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Unpacking mime-support (3.66) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:arm64.
Preparing to unpack .../5-libreadline8_8.2-1.3_arm64.deb ...
Unpacking libreadline8:arm64 (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:arm64.
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Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ...
Selecting previously unselected package python3.11.
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Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package python3.
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Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../001-sgml-base_1.31_all.deb ...
Unpacking sgml-base (1.31) ...
Selecting previously unselected package sensible-utils.
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Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../003-libmagic-mgc_1%3a5.44-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../004-libmagic1_1%3a5.44-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../005-file_1%3a5.44-3_arm64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../006-gettext-base_0.21-12_arm64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../007-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../008-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../009-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../010-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../012-m4_1.4.19-3_arm64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../017-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
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Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
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Unpacking libelf1:arm64 (0.188-2.1) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.15-1) ...
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Unpacking libicu72:arm64 (72.1-3) ...
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Unpacking libxml2:arm64 (2.9.14+dfsg-1.3~deb12u1) ...
Selecting previously unselected package gettext.
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Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
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Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21+nmu1) ...
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Unpacking debhelper (13.11.4) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../032-python3-lib2to3_3.11.2-3_all.deb ...
Unpacking python3-lib2to3 (3.11.2-3) ...
Selecting previously unselected package python3-distutils.
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Unpacking python3-distutils (3.11.2-3) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../034-dh-python_5.20230130+deb12u1_all.deb ...
Unpacking dh-python (5.20230130+deb12u1) ...
Selecting previously unselected package libfontenc1:arm64.
Preparing to unpack .../035-libfontenc1_1%3a1.1.4-1_arm64.deb ...
Unpacking libfontenc1:arm64 (1:1.1.4-1) ...
Selecting previously unselected package libbrotli1:arm64.
Preparing to unpack .../036-libbrotli1_1.0.9-2+b6_arm64.deb ...
Unpacking libbrotli1:arm64 (1.0.9-2+b6) ...
Selecting previously unselected package libpng16-16:arm64.
Preparing to unpack .../037-libpng16-16_1.6.39-2_arm64.deb ...
Unpacking libpng16-16:arm64 (1.6.39-2) ...
Selecting previously unselected package libfreetype6:arm64.
Preparing to unpack .../038-libfreetype6_2.12.1+dfsg-5_arm64.deb ...
Unpacking libfreetype6:arm64 (2.12.1+dfsg-5) ...
Selecting previously unselected package x11-common.
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Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../040-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../041-xfonts-utils_1%3a7.7+6_arm64.deb ...
Unpacking xfonts-utils (1:7.7+6) ...
Selecting previously unselected package fonts-urw-base35.
Preparing to unpack .../042-fonts-urw-base35_20200910-7_all.deb ...
Unpacking fonts-urw-base35 (20200910-7) ...
Selecting previously unselected package libblas3:arm64.
Preparing to unpack .../043-libblas3_3.11.0-2_arm64.deb ...
Unpacking libblas3:arm64 (3.11.0-2) ...
Selecting previously unselected package libbsd0:arm64.
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Unpacking libbsd0:arm64 (0.11.7-2) ...
Selecting previously unselected package libsasl2-modules-db:arm64.
Preparing to unpack .../045-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ...
Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libsasl2-2:arm64.
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Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libldap-2.5-0:arm64.
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Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ...
Selecting previously unselected package libnghttp2-14:arm64.
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Unpacking libnghttp2-14:arm64 (1.52.0-1+deb12u1) ...
Selecting previously unselected package libpsl5:arm64.
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-pyfaidx-0.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.7.1-2_source.changes
dpkg-buildpackage: info: source package python-pyfaidx
dpkg-buildpackage: info: source version 0.7.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.7.1'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build' (and everything under it)
'build/bdist.linux-arm64' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -f .coverage
rm -f tests/data/genes.fasta.gz
rm -rf pyfaidx.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.7.1'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx
copying pyfaidx/__init__.py -> /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx
copying pyfaidx/cli.py -> /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.7.1'
bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz
dh_auto_test
I: pybuild base:240: cd /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack
rootdir: /build/reproducible-path/python-pyfaidx-0.7.1
collected 135 items
tests/test_FastaRecord.py ..... [ 3%]
tests/test_FastaRecord_iter.py ... [ 5%]
tests/test_FastaVariant.py ssssss [ 10%]
tests/test_Fasta_bgzip.py x.....x..................... [ 31%]
tests/test_Fasta_integer_index.py .. [ 32%]
tests/test_Fasta_synchronization.py ... [ 34%]
tests/test_Path.py .. [ 36%]
tests/test_bio_seqio.py ... [ 38%]
tests/test_faidx.py ......... [ 45%]
tests/test_feature_bounds_check.py ........................ [ 62%]
tests/test_feature_default_seq.py . [ 63%]
tests/test_feature_indexing.py .............. [ 74%]
tests/test_feature_key_function.py ...... [ 78%]
tests/test_feature_read_ahead_buffer.py ..... [ 82%]
tests/test_feature_sequence_as_raw.py ..... [ 85%]
tests/test_feature_spliced_seq.py .. [ 87%]
tests/test_feature_split_char.py .... [ 90%]
tests/test_fsspec.py ssss [ 93%]
tests/test_sequence_class.py ......... [100%]
================== 123 passed, 10 skipped, 2 xfailed in 9.42s ==================
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.7.1'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running install_lib
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx
creating /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__
copying /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__pycache__/cli.cpython-311.pyc -> /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__
copying /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__pycache__
copying /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/cli.py -> /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx
copying /build/reproducible-path/python-pyfaidx-0.7.1/.pybuild/cpython3_3.11_pyfaidx/build/pyfaidx/__init__.py -> /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx
byte-compiling /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/cli.py to cli.cpython-311.pyc
byte-compiling /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx/__init__.py to __init__.cpython-311.pyc
running install_egg_info
running egg_info
creating pyfaidx.egg-info
writing pyfaidx.egg-info/PKG-INFO
writing dependency_links to pyfaidx.egg-info/dependency_links.txt
writing entry points to pyfaidx.egg-info/entry_points.txt
writing requirements to pyfaidx.egg-info/requires.txt
writing top-level names to pyfaidx.egg-info/top_level.txt
writing manifest file 'pyfaidx.egg-info/SOURCES.txt'
reading manifest file 'pyfaidx.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'docs/build/html/*'
adding license file 'LICENSE'
writing manifest file 'pyfaidx.egg-info/SOURCES.txt'
Copying pyfaidx.egg-info to /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/lib/python3.11/dist-packages/pyfaidx-0.0.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing faidx script to /build/reproducible-path/python-pyfaidx-0.7.1/debian/python3-pyfaidx/usr/bin
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.7.1'
dh_compress --exclude=gz.tbi
make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.7.1'
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.7.1-2_all.deb'.
dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.7.1-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.7.1-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../python-pyfaidx_0.7.1-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2907629 and its subdirectories
I: Current time: Sun Jan 7 17:41:12 -12 2024
I: pbuilder-time-stamp: 1704692472
Mon Jan 8 05:41:14 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Mon Jan 8 05:41:14 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Mon Jan 8 05:44:58 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Mon Jan 8 05:44:59 UTC 2024 I: python-pyfaidx_0.7.1-2_arm64.changes:
Format: 1.8
Date: Fri, 25 Nov 2022 22:51:46 +0100
Source: python-pyfaidx
Binary: python-pyfaidx-examples python3-pyfaidx
Architecture: all
Version: 0.7.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python-pyfaidx-examples - example data for efficient random access to fasta subsequences fo
python3-pyfaidx - efficient random access to fasta subsequences for Python 3
Changes:
python-pyfaidx (0.7.1-2) unstable; urgency=medium
.
* biopython-1.80.patch: add; fix test failure with biopython 1.80.
* d/control: add myself to uploaders.
* d/t/run-unit-test: run on supported python3 versions.
* d/python-pyfaidx-examples.lintian-overrides: silence warning.
* d/t/control: test depends on python3-all.
Checksums-Sha1:
6540a43c89bf6b7fa205a4d2a5b3ec06d3b15ae0 43760 python-pyfaidx-examples_0.7.1-2_all.deb
65c55a0cbbb4ee3a681709400ddf92daf6509d9d 7944 python-pyfaidx_0.7.1-2_arm64.buildinfo
731ee26fe3e9f4502395df4758dfb1e3cde58971 28016 python3-pyfaidx_0.7.1-2_all.deb
Checksums-Sha256:
dee24dac569e8acccc3edc820fc3916036656c035045fd4e7baaf9cb6860179a 43760 python-pyfaidx-examples_0.7.1-2_all.deb
372a57148540d90ed63438a3b4a36fd12470d07bf2447514e289826722f4babb 7944 python-pyfaidx_0.7.1-2_arm64.buildinfo
85f1144682205312e82c34784523e7961393e447b6dd10fd5593c1136473eb98 28016 python3-pyfaidx_0.7.1-2_all.deb
Files:
9411d69a17063e0f25077940778f4413 43760 python optional python-pyfaidx-examples_0.7.1-2_all.deb
772908ba10f20e0369134f9fe82fafef 7944 python optional python-pyfaidx_0.7.1-2_arm64.buildinfo
8195f3a6273899b0b50250fa9acf130e 28016 python optional python3-pyfaidx_0.7.1-2_all.deb
Mon Jan 8 05:45:00 UTC 2024 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/python-pyfaidx_0.7.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/python-pyfaidx_0.7.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/python-pyfaidx_0.7.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/b1/python-pyfaidx_0.7.1-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Hf8aUBzO/b2/python-pyfaidx_0.7.1-2_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.273s)
0.273s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.014s)
0.013s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Mon Jan 8 05:45:00 UTC 2024 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Mon Jan 8 05:45:00 UTC 2024 I: python-pyfaidx from bookworm built successfully and reproducibly on arm64.
Mon Jan 8 05:45:05 UTC 2024 I: Submitting .buildinfo files to external archives:
Mon Jan 8 05:45:05 UTC 2024 I: Submitting 12K b1/python-pyfaidx_0.7.1-2_arm64.buildinfo.asc
Mon Jan 8 05:45:05 UTC 2024 I: Submitting 12K b2/python-pyfaidx_0.7.1-2_arm64.buildinfo.asc
Mon Jan 8 05:45:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Jan 8 05:45:06 UTC 2024 I: Done submitting .buildinfo files.
Mon Jan 8 05:45:06 UTC 2024 I: Removing signed python-pyfaidx_0.7.1-2_arm64.buildinfo.asc files:
removed './b1/python-pyfaidx_0.7.1-2_arm64.buildinfo.asc'
removed './b2/python-pyfaidx_0.7.1-2_arm64.buildinfo.asc'