Sun Apr 30 03:55:48 UTC 2023 I: starting to build repeatmasker-recon/bookworm/arm64 on jenkins on '2023-04-30 03:55' Sun Apr 30 03:55:48 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/16188/console.log Sun Apr 30 03:55:48 UTC 2023 I: Downloading source for bookworm/repeatmasker-recon=1.08-7 --2023-04-30 03:55:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/repeatmasker-recon/repeatmasker-recon_1.08-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2128 (2.1K) [text/prs.lines.tag] Saving to: ‘repeatmasker-recon_1.08-7.dsc’ 0K .. 100% 167M=0s 2023-04-30 03:55:48 (167 MB/s) - ‘repeatmasker-recon_1.08-7.dsc’ saved [2128/2128] Sun Apr 30 03:55:48 UTC 2023 I: repeatmasker-recon_1.08-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: repeatmasker-recon Binary: repeatmasker-recon Architecture: any Version: 1.08-7 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Nilesh Patra Homepage: https://www.repeatmasker.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: repeatmasker-recon deb science optional arch=any Checksums-Sha1: a91b9f54dc277248c6848c2584531f7538bec3b4 108477 repeatmasker-recon_1.08.orig.tar.gz 9067a8ba2d5ae4c3611aa13ec382e6ca3e1e1ca4 5772 repeatmasker-recon_1.08-7.debian.tar.xz Checksums-Sha256: 699765fa49d18dbfac9f7a82ecd054464b468cb7521abe9c2bd8caccf08ee7d8 108477 repeatmasker-recon_1.08.orig.tar.gz 8f66c4b87e8dabba5daf8696d77a7302982c50697ceb344eeb2ba7cf7806eaa5 5772 repeatmasker-recon_1.08-7.debian.tar.xz Files: 48c5c650a312bc1cc3fdddcfd943deb0 108477 repeatmasker-recon_1.08.orig.tar.gz 0adb4b3fc0d6b1c73c766d75d582daef 5772 repeatmasker-recon_1.08-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFhNW4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGweA/+Iye7o06OssVgQkE6HeGgc1RvoHRUDE4l ZN/BoE6HYZuiJFHdfTi2a9ca/BgiC4DfhQ2JksiD1yb6H6wtbwXk6MqtUzFPUVxv WQyKxMIW/R35cM5LtI98abKRi+u5RTF0IXP4GHUm82emX84cyNN3RH3ZMesi1JR7 Gophw8pEJqcRwNSgBD5+27VZbFOZ/S8QlYUhSILSPyRH4QVFxEITq+/Um9l0gq4B 4Tiibw6ETHg/i/aWqF63ZVmgxuKCrV23FIp2WNfZcIFVcJjK3LEFLGLbFy20rbHv Ln3e/867m7fTwf4AwfOZCIrnPCw6RBjDvNvbxYgEiNU4BaWmtNPUOJv4X3y3uYH5 mtSRZVii0wX2JDA630h7uK9R2aOVpWmx/yXjTEvBomlh2sb9fQ9tunGEDofAwfN/ Pp0WwBVnqWx7KzZ2qq9UndtBIAj3vbMe5G6q7VeUssXOOOQ8aqQYC+sK3ldhQYZh yxuubInginQ+V7vLeI54VFmZH+YlqyRCutA9MR69EYpspfyzjK3Y/RT9Eg9RhsUt 0VmXdrO5V/tLyAudUAsp4tfIMDjaQ2Yz6R4FQoASCQ8re6JI4N6G55h6/fTbungo 7A6kjTDp7yLaipV+b1JJZyYgwml7jqWmjQANf0ZweFplpTGPz9/s2lN1TajMluZm 0tsre5Ic0SE= =iJn9 -----END PGP SIGNATURE----- Sun Apr 30 03:55:48 UTC 2023 I: Checking whether the package is not for us Sun Apr 30 03:55:48 UTC 2023 I: Starting 1st build on remote node codethink12-arm64.debian.net. Sun Apr 30 03:55:48 UTC 2023 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Sun Apr 30 03:56:33 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 29 15:55:51 -12 2023 I: pbuilder-time-stamp: 1682826951 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [repeatmasker-recon_1.08-7.dsc] I: copying [./repeatmasker-recon_1.08.orig.tar.gz] I: copying [./repeatmasker-recon_1.08-7.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 8 18:23:42 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./repeatmasker-recon_1.08-7.dsc: no acceptable signature found dpkg-source: info: extracting repeatmasker-recon in repeatmasker-recon-1.08 dpkg-source: info: unpacking repeatmasker-recon_1.08.orig.tar.gz dpkg-source: info: unpacking repeatmasker-recon_1.08-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-udpate-paths.patch dpkg-source: info: applying 0002-fix_binary_name.patch dpkg-source: info: applying 0003-hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1220/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1220' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/pbuilderrc_UhR5 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/b1 --logfile b1/build.log repeatmasker-recon_1.08-7.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 26 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1220/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 0s (51.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/repeatmasker-recon-1.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../repeatmasker-recon_1.08-7_source.changes dpkg-buildpackage: info: source package repeatmasker-recon dpkg-buildpackage: info: source version 1.08-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j8 clean make[1]: Entering directory '/build/repeatmasker-recon-1.08/src' rm -f imagespread eledef eleredef edgeredef famdef *.o *~ *.Addrs *.Counts *.pixie Makefile.bak core imagespread eledef eleredef edgeredef famdef TAGS make[1]: Leaving directory '/build/repeatmasker-recon-1.08/src' dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/build/repeatmasker-recon-1.08' rm -rf bin dh_clean make[1]: Leaving directory '/build/repeatmasker-recon-1.08' debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/repeatmasker-recon-1.08/src' gcc -g -O2 -ffile-prefix-map=/build/repeatmasker-recon-1.08=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro imagespread.c -o imagespread gcc -g -O2 -ffile-prefix-map=/build/repeatmasker-recon-1.08=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro eledef.c -o eledef gcc -g -O2 -ffile-prefix-map=/build/repeatmasker-recon-1.08=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro eleredef.c -o eleredef gcc -g -O2 -ffile-prefix-map=/build/repeatmasker-recon-1.08=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro edgeredef.c -o edgeredef gcc -g -O2 -ffile-prefix-map=/build/repeatmasker-recon-1.08=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro famdef.c -o famdef In file included from msps.h:4, from eledef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:16: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include '' or provide a declaration of 'isspace' 3 | #include "string.h" +++ |+#include 4 | msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function 'GetSeqNames': seqlist.h:39:16: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include '' or provide a declaration of 'isspace' 3 | #include "string.h" +++ |+#include 4 | In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:16: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ msps.h: In function 'scan_msp': seqlist.h:4:1: note: include '' or provide a declaration of 'isspace' 3 | #include "string.h" +++ |+#include 4 | msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:16: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include '' or provide a declaration of 'isspace' 3 | #include "string.h" +++ |+#include 4 | msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function 'GetSeqNames': seqlist.h:39:16: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include '' or provide a declaration of 'isspace' 3 | #include "string.h" +++ |+#include 4 | msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function 'GetSeqNames': eledef.c: In function 'main': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:95:13: warning: ignoring return value of 'freopen' declared with attribute 'warn_unused_result' [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:246:7: note: in expansion of macro 'DUMBBELL' 246 | DUMBBELL; | ^~~~~~~~ eledef.c:95:13: warning: ignoring return value of 'freopen' declared with attribute 'warn_unused_result' [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:253:5: note: in expansion of macro 'DUMBBELL' 253 | DUMBBELL; | ^~~~~~~~ eleredef.c: In function 'main': eleredef.c:239:70: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 239 | printf("eleredef: Error! Could not allocate memory for img_ptr: %d bytes requested\n", ( MAX_IMG*sizeof(IMAGE_t *) ) ); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ edgeredef.c: In function 'general_edge_redef': edgeredef.c:200:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | system(command); | ^~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/repeatmasker-recon-1.08/src' debian/rules override_dh_auto_test make[1]: Entering directory '/build/repeatmasker-recon-1.08' echo "Do not run tests since there exists no testsuite.sh needed to run those in the package" Do not run tests since there exists no testsuite.sh needed to run those in the package make[1]: Leaving directory '/build/repeatmasker-recon-1.08' create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src debian/rules execute_before_dh_auto_install make[1]: Entering directory '/build/repeatmasker-recon-1.08' mkdir -p bin make[1]: Leaving directory '/build/repeatmasker-recon-1.08' dh_auto_install --destdir=debian/repeatmasker-recon/ -O--sourcedirectory=src cd src && make -j8 install DESTDIR=/build/repeatmasker-recon-1.08/debian/repeatmasker-recon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/repeatmasker-recon-1.08/src' cp imagespread eledef eleredef edgeredef famdef ../bin/ make[1]: Leaving directory '/build/repeatmasker-recon-1.08/src' dh_install -O--sourcedirectory=src debian/rules execute_after_dh_install make[1]: Entering directory '/build/repeatmasker-recon-1.08' cp scripts/recon.pl debian/repeatmasker-recon/usr/bin/repeatmasker-recon cp scripts/MSPCollect.pl debian/repeatmasker-recon/usr/bin/MSPCollect make[1]: Leaving directory '/build/repeatmasker-recon-1.08' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'repeatmasker-recon-dbgsym' in '../repeatmasker-recon-dbgsym_1.08-7_arm64.deb'. dpkg-deb: building package 'repeatmasker-recon' in '../repeatmasker-recon_1.08-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../repeatmasker-recon_1.08-7_arm64.buildinfo dpkg-genchanges --build=binary -O../repeatmasker-recon_1.08-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1220 and its subdirectories I: Current time: Sat Apr 29 15:56:32 -12 2023 I: pbuilder-time-stamp: 1682826992 Sun Apr 30 03:56:33 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Sun Apr 30 03:56:33 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Sun Apr 30 03:57:31 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Sun Apr 30 03:57:32 UTC 2023 I: repeatmasker-recon_1.08-7_arm64.changes: Format: 1.8 Date: Sat, 09 Oct 2021 08:21:33 +0200 Source: repeatmasker-recon Binary: repeatmasker-recon repeatmasker-recon-dbgsym Architecture: arm64 Version: 1.08-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: repeatmasker-recon - finds repeat families from biological sequences Changes: repeatmasker-recon (1.08-7) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.0 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/rules (routine-update) Checksums-Sha1: 215ce4e8eb0a8b53177486c5572de5749474b7e0 111584 repeatmasker-recon-dbgsym_1.08-7_arm64.deb 4f3369374bd51021fd8d6f42932f6ebf32f3dfd7 5217 repeatmasker-recon_1.08-7_arm64.buildinfo 138a82a951563f95e1c7f76cce36ffd537e32ce7 82872 repeatmasker-recon_1.08-7_arm64.deb Checksums-Sha256: 6e3fe994dd8c58b914e16771abb971ba462b7fe74bc97f52a1b3c1adc4fa505a 111584 repeatmasker-recon-dbgsym_1.08-7_arm64.deb 192d8d7a297ea518b1004824ee41e9c0702054988f054a288b262b37dd6f1137 5217 repeatmasker-recon_1.08-7_arm64.buildinfo afb7e5b6f979903e31de46c0e39d72d265e17626a04b742a378d72134c3783ec 82872 repeatmasker-recon_1.08-7_arm64.deb Files: 9884abe48de7669e5301db625cebf0d2 111584 debug optional repeatmasker-recon-dbgsym_1.08-7_arm64.deb adece1d3535c27c63c580ad304856c6a 5217 science optional repeatmasker-recon_1.08-7_arm64.buildinfo 5b483b771622b8be8977b83389860013 82872 science optional repeatmasker-recon_1.08-7_arm64.deb Sun Apr 30 03:57:33 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/repeatmasker-recon_1.08-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/repeatmasker-recon_1.08-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/repeatmasker-recon_1.08-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/b1/repeatmasker-recon_1.08-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CeLpWuo1/b2/repeatmasker-recon_1.08-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.340s) 0.340s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun Apr 30 03:57:34 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 30 03:57:34 UTC 2023 I: repeatmasker-recon from bookworm built successfully and reproducibly on arm64. Sun Apr 30 03:57:37 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 30 03:57:37 UTC 2023 I: Submitting 8.0K b1/repeatmasker-recon_1.08-7_arm64.buildinfo.asc Sun Apr 30 03:57:38 UTC 2023 I: Submitting 8.0K b2/repeatmasker-recon_1.08-7_arm64.buildinfo.asc Sun Apr 30 03:57:39 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 30 03:57:39 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 30 03:57:39 UTC 2023 I: Removing signed repeatmasker-recon_1.08-7_arm64.buildinfo.asc files: removed './b1/repeatmasker-recon_1.08-7_arm64.buildinfo.asc' removed './b2/repeatmasker-recon_1.08-7_arm64.buildinfo.asc'