Sun Nov 5 18:03:11 UTC 2023 I: starting to build hinge/bookworm/armhf on jenkins on '2023-11-05 18:02'
Sun Nov 5 18:03:11 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_17/2232/console.log
Sun Nov 5 18:03:11 UTC 2023 I: Downloading source for bookworm/hinge=0.5.0-7
--2023-11-05 18:03:11-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/hinge/hinge_0.5.0-7.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2141 (2.1K) [text/prs.lines.tag]
Saving to: ‘hinge_0.5.0-7.dsc’
0K .. 100% 9.44M=0s
2023-11-05 18:03:11 (9.44 MB/s) - ‘hinge_0.5.0-7.dsc’ saved [2141/2141]
Sun Nov 5 18:03:11 UTC 2023 I: hinge_0.5.0-7.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: hinge
Binary: hinge
Architecture: any
Version: 0.5.0-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/HingeAssembler/HINGE
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/hinge
Vcs-Git: https://salsa.debian.org/med-team/hinge.git
Build-Depends: debhelper-compat (= 13), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib
Package-List:
hinge deb science optional arch=any
Checksums-Sha1:
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a8004e4e2e056797c310e57d218a7d725124c1ee 19920 hinge_0.5.0-7.debian.tar.xz
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9baddb2ec5ef3c96442d70346259261b6a08695f64b37ba76ba99e7d3fa2880b 19920 hinge_0.5.0-7.debian.tar.xz
Files:
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433f4b05d5367799527688e52ef75c2a 19920 hinge_0.5.0-7.debian.tar.xz
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Sun Nov 5 18:03:11 UTC 2023 I: Checking whether the package is not for us
Sun Nov 5 18:03:11 UTC 2023 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net.
Sun Nov 5 18:03:11 UTC 2023 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net.
Sun Nov 5 18:16:57 UTC 2023 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Nov 5 06:03:23 -12 2023
I: pbuilder-time-stamp: 1699207403
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [hinge_0.5.0-7.dsc]
I: copying [./hinge_0.5.0.orig.tar.gz]
I: copying [./hinge_0.5.0-7.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Dec 21 19:23:38 2021 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hinge_0.5.0-7.dsc: no acceptable signature found
dpkg-source: info: extracting hinge in hinge-0.5.0
dpkg-source: info: unpacking hinge_0.5.0.orig.tar.gz
dpkg-source: info: unpacking hinge_0.5.0-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying external-spdlog.patch
dpkg-source: info: applying libspdlog-14.0.patch
dpkg-source: info: applying libspdlog-1:1.3.0
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying spdlog-1.5.0.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2109/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='b2b5277fed7046db8a98fd558701fc0e'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2109'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/pbuilderrc_zkmd --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/b1 --logfile b1/build.log hinge_0.5.0-7.dsc'
SUDO_GID='112'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt32b 6.1.0-13-armmp-lpae #1 SMP Debian 6.1.55-1 (2023-09-29) armv7l GNU/Linux
I: ls -l /bin
total 4964
-rwxr-xr-x 1 root root 838488 Apr 23 2023 bash
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 67632 Sep 20 2022 cat
-rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 67684 Sep 20 2022 chown
-rwxr-xr-x 1 root root 133532 Sep 20 2022 cp
-rwxr-xr-x 1 root root 132868 Jan 5 2023 dash
-rwxr-xr-x 1 root root 133220 Sep 20 2022 date
-rwxr-xr-x 1 root root 67732 Sep 20 2022 dd
-rwxr-xr-x 1 root root 68104 Sep 20 2022 df
-rwxr-xr-x 1 root root 133632 Sep 20 2022 dir
-rwxr-xr-x 1 root root 59128 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 67560 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 67548 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 55748 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 26208 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 128608 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 67720 Sep 20 2022 ln
-rwxr-xr-x 1 root root 35132 Mar 22 2023 login
-rwxr-xr-x 1 root root 133632 Sep 20 2022 ls
-rwxr-xr-x 1 root root 136808 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 38504 Mar 22 2023 more
-rwsr-xr-x 1 root root 38496 Mar 22 2023 mount
-rwxr-xr-x 1 root root 9824 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 133532 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 67672 Sep 20 2022 rm
-rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 14152 Jul 28 11:46 run-parts
-rwxr-xr-x 1 root root 133372 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 67644 Sep 20 2022 stty
-rwsr-xr-x 1 root root 50800 Mar 22 2023 su
-rwxr-xr-x 1 root root 67584 Sep 20 2022 sync
-rwxr-xr-x 1 root root 336764 Apr 6 2023 tar
-rwxr-xr-x 1 root root 9800 Jul 28 11:46 tempfile
-rwxr-xr-x 1 root root 133224 Sep 20 2022 touch
-rwxr-xr-x 1 root root 67548 Sep 20 2022 true
-rwxr-xr-x 1 root root 9768 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Mar 22 2023 umount
-rwxr-xr-x 1 root root 67572 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 42608 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/2109/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19288 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libspdlog-dev; however:
Package libspdlog-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-dev; however:
Package libboost-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however:
Package libboost-graph-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
Package libhdf5-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on pandoc; however:
Package pandoc is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on daligner; however:
Package daligner is not installed.
pbuilder-satisfydepends-dummy depends on dazzdb; however:
Package dazzdb is not installed.
pbuilder-satisfydepends-dummy depends on dascrubber; however:
Package dascrubber is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-ujson; however:
Package python3-ujson is not installed.
pbuilder-satisfydepends-dummy depends on python3-colormap; however:
Package python3-colormap is not installed.
pbuilder-satisfydepends-dummy depends on python3-pbcore; however:
Package python3-pbcore is not installed.
pbuilder-satisfydepends-dummy depends on python3-networkx; however:
Package python3-networkx is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} catch2{a} cmake{a} cmake-data{a} daligner{a} dascrubber{a} dazzdb{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libblas3{a} libboost-dev{a} libboost-graph-dev{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt9{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhts3{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjsoncpp25{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblua5.3-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspdlog-dev{a} libspdlog1.10{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} pandoc{a} pandoc-data{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-appdirs{a} python3-attr{a} python3-biopython{a} python3-brotli{a} python3-colorama{a} python3-colorlog{a} python3-colormap{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-easydev{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pbcore{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ptyprocess{a} python3-pyparsing{a} python3-pysam{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-ujson{a} python3-unicodedata2{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-bs4 python3-gdal python3-h5py python3-html5lib python3-olefile python3-pydot python3-pygraphviz python3-yaml shared-mime-info wget xdg-user-dirs
0 packages upgraded, 198 newly installed, 0 to remove and 0 not upgraded.
Need to get 172 MB of archives. After unpacking 845 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB]
Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB]
Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB]
Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB]
Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB]
Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B]
Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB]
Get: 13 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB]
Get: 14 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB]
Get: 15 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 16 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get: 17 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB]
Get: 18 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB]
Get: 19 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB]
Get: 20 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 21 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB]
Get: 22 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB]
Get: 23 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB]
Get: 24 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB]
Get: 25 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB]
Get: 26 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB]
Get: 27 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 29 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB]
Get: 30 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB]
Get: 31 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB]
Get: 32 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB]
Get: 33 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB]
Get: 34 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB]
Get: 37 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 38 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB]
Get: 39 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 40 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB]
Get: 41 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB]
Get: 42 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 43 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB]
Get: 44 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB]
Get: 46 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2+deb12u1 [292 kB]
Get: 47 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2+deb12u1 [699 kB]
Get: 48 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB]
Get: 49 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB]
Get: 50 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB]
Get: 51 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB]
Get: 52 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB]
Get: 53 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB]
Get: 54 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get: 55 http://deb.debian.org/debian bookworm/main armhf catch2 armhf 2.13.10-1 [454 kB]
Get: 56 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB]
Get: 57 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [591 kB]
Get: 58 http://deb.debian.org/debian bookworm/main armhf libarchive13 armhf 3.6.2-1 [299 kB]
Get: 59 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB]
Get: 60 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB]
Get: 61 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB]
Get: 62 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB]
Get: 63 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get: 64 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 65 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB]
Get: 66 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10+deb12u3 [350 kB]
Get: 67 http://deb.debian.org/debian bookworm/main armhf libjsoncpp25 armhf 1.9.5-4 [68.6 kB]
Get: 68 http://deb.debian.org/debian bookworm/main armhf librhash0 armhf 1.4.3-3 [146 kB]
Get: 69 http://deb.debian.org/debian bookworm/main armhf libuv1 armhf 1.44.2-1 [126 kB]
Get: 70 http://deb.debian.org/debian bookworm/main armhf cmake-data all 3.25.1-1 [2026 kB]
Get: 71 http://deb.debian.org/debian bookworm/main armhf cmake armhf 3.25.1-1 [4263 kB]
Get: 72 http://deb.debian.org/debian bookworm/main armhf daligner armhf 1.0+git20221215.bd26967-1 [195 kB]
Get: 73 http://deb.debian.org/debian bookworm/main armhf dascrubber armhf 1.1-4 [141 kB]
Get: 74 http://deb.debian.org/debian bookworm/main armhf dazzdb armhf 1.0+git20221215.aad3a46-1 [197 kB]
Get: 75 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 76 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB]
Get: 77 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 78 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 79 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get: 80 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 81 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 82 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB]
Get: 83 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB]
Get: 84 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB]
Get: 85 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 86 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 87 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB]
Get: 88 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get: 89 http://deb.debian.org/debian bookworm/main armhf hdf5-helpers armhf 1.10.8+repack1-1 [27.9 kB]
Get: 90 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB]
Get: 91 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB]
Get: 92 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B]
Get: 93 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB]
Get: 94 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB]
Get: 95 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-21 [9508 kB]
Get: 96 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B]
Get: 97 http://deb.debian.org/debian bookworm/main armhf libboost-regex1.74.0 armhf 1.74.0+ds1-21 [432 kB]
Get: 98 http://deb.debian.org/debian bookworm/main armhf libboost-graph1.74.0 armhf 1.74.0+ds1-21 [285 kB]
Get: 99 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB]
Get: 100 http://deb.debian.org/debian bookworm/main armhf libboost-regex1.74-dev armhf 1.74.0+ds1-21 [543 kB]
Get: 101 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74.0 armhf 1.74.0+ds1-21 [298 kB]
Get: 102 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74-dev armhf 1.74.0+ds1-21 [368 kB]
Get: 103 http://deb.debian.org/debian bookworm/main armhf libboost-test1.74.0 armhf 1.74.0+ds1-21 [412 kB]
Get: 104 http://deb.debian.org/debian bookworm/main armhf libboost-test1.74-dev armhf 1.74.0+ds1-21 [516 kB]
Get: 105 http://deb.debian.org/debian bookworm/main armhf libboost-graph1.74-dev armhf 1.74.0+ds1-21 [1526 kB]
Get: 106 http://deb.debian.org/debian bookworm/main armhf libboost-graph-dev armhf 1.74.0.3 [4436 B]
Get: 107 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10+deb12u3 [346 kB]
Get: 108 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-10+deb12u3 [457 kB]
Get: 109 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB]
Get: 110 http://deb.debian.org/debian bookworm/main armhf libdouble-conversion3 armhf 3.2.1-1 [39.3 kB]
Get: 111 http://deb.debian.org/debian bookworm/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB]
Get: 112 http://deb.debian.org/debian bookworm/main armhf libfmt-dev armhf 9.1.0+ds1-2 [171 kB]
Get: 113 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB]
Get: 114 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB]
Get: 115 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB]
Get: 116 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB]
Get: 117 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB]
Get: 118 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB]
Get: 119 http://deb.debian.org/debian bookworm/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB]
Get: 120 http://deb.debian.org/debian bookworm/main armhf libhdf5-fortran-102 armhf 1.10.8+repack1-1 [82.1 kB]
Get: 121 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB]
Get: 122 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB]
Get: 123 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB]
Get: 124 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB]
Get: 125 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get: 126 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB]
Get: 127 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get: 128 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.11-1~deb12u1 [2136 kB]
Get: 129 http://deb.debian.org/debian bookworm/main armhf libhdf5-dev armhf 1.10.8+repack1-1 [2573 kB]
Get: 130 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB]
Get: 131 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB]
Get: 132 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB]
Get: 133 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB]
Get: 134 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 135 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 136 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB]
Get: 137 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB]
Get: 138 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB]
Get: 139 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB]
Get: 140 http://deb.debian.org/debian bookworm/main armhf liblua5.3-0 armhf 5.3.6-2 [101 kB]
Get: 141 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB]
Get: 142 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB]
Get: 143 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B]
Get: 144 http://deb.debian.org/debian bookworm/main armhf libspdlog1.10 armhf 1:1.10.0+ds-0.4 [113 kB]
Get: 145 http://deb.debian.org/debian bookworm/main armhf libspdlog-dev armhf 1:1.10.0+ds-0.4 [209 kB]
Get: 146 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2+deb12u1 [242 kB]
Get: 147 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB]
Get: 148 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2+deb12u1 [98.4 kB]
Get: 149 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2+deb12u1 [106 kB]
Get: 150 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB]
Get: 151 http://deb.debian.org/debian bookworm/main armhf libyaml-0-2 armhf 0.2.5-1 [46.8 kB]
Get: 152 http://deb.debian.org/debian bookworm/main armhf pandoc-data all 2.17.1.1-2~deb12u1 [418 kB]
Get: 153 http://deb.debian.org/debian bookworm/main armhf pandoc armhf 2.17.1.1-2~deb12u1 [25.9 MB]
Get: 154 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get: 155 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get: 156 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get: 157 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 158 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB]
Get: 159 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB]
Get: 160 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB]
Get: 161 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-3 [95.4 kB]
Get: 162 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB]
Get: 163 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB]
Get: 164 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB]
Get: 165 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get: 166 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get: 167 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB]
Get: 168 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB]
Get: 169 http://deb.debian.org/debian bookworm/main armhf python3-colorama all 0.4.6-2 [36.8 kB]
Get: 170 http://deb.debian.org/debian bookworm/main armhf python3-colorlog all 6.7.0-1 [26.5 kB]
Get: 171 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get: 172 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB]
Get: 173 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB]
Get: 174 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB]
Get: 175 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get: 176 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get: 177 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB]
Get: 178 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get: 179 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get: 180 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get: 181 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-4 [30.1 kB]
Get: 182 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get: 183 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB]
Get: 184 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB]
Get: 185 http://deb.debian.org/debian bookworm/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1+b2 [297 kB]
Get: 186 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get: 187 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB]
Get: 188 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB]
Get: 189 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get: 190 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB]
Get: 191 http://deb.debian.org/debian bookworm/main armhf python3-ptyprocess all 0.7.0-5 [14.7 kB]
Get: 192 http://deb.debian.org/debian bookworm/main armhf python3-pexpect all 4.8.0-4 [52.9 kB]
Get: 193 http://deb.debian.org/debian bookworm/main armhf python3-easydev all 0.12.0+dfsg-4 [35.0 kB]
Get: 194 http://deb.debian.org/debian bookworm/main armhf python3-colormap all 1.0.4-3 [15.4 kB]
Get: 195 http://deb.debian.org/debian bookworm/main armhf python3-networkx all 2.8.8-1 [1425 kB]
Get: 196 http://deb.debian.org/debian bookworm/main armhf python3-pysam armhf 0.20.0+ds-3+b1 [1484 kB]
Get: 197 http://deb.debian.org/debian bookworm/main armhf python3-pbcore all 2.1.2+dfsg-5 [2830 kB]
Get: 198 http://deb.debian.org/debian bookworm/main armhf python3-ujson armhf 5.7.0-1 [21.6 kB]
Fetched 172 MB in 15s (11.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:armhf.
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up python3-numpy (1:1.24.2-1) ...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/hinge-0.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hinge_0.5.0-7_source.changes
dpkg-buildpackage: info: source package hinge
dpkg-buildpackage: info: source version 0.5.0-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 12.2.0
-- The CXX compiler identification is GNU 12.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: graph
-- Configuring done
CMake Warning (dev) at src/filter/CMakeLists.txt:4 (add_executable):
Policy CMP0115 is not set: Source file extensions must be explicit. Run
"cmake --help-policy CMP0115" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
File:
/build/reproducible-path/hinge-0.5.0/src/filter/filter.cpp
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at src/maximal/CMakeLists.txt:4 (add_executable):
Policy CMP0115 is not set: Source file extensions must be explicit. Run
"cmake --help-policy CMP0115" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
File:
/build/reproducible-path/hinge-0.5.0/src/maximal/maximal.cpp
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at src/consensus/CMakeLists.txt:4 (add_executable):
Policy CMP0115 is not set: Source file extensions must be explicit. Run
"cmake --help-policy CMP0115" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
File:
/build/reproducible-path/hinge-0.5.0/src/consensus/draft.cpp
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at src/layout/CMakeLists.txt:9 (add_executable):
Policy CMP0115 is not set: Source file extensions must be explicit. Run
"cmake --help-policy CMP0115" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
File:
/build/reproducible-path/hinge-0.5.0/src/layout/hinging.cpp
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf
dh_auto_build
cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/reproducible-path/hinge-0.5.0 -B/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend
make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend
make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/CMakeFiles/man.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build
make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 6%] Generating hinge.1
[ 6%] Building C object bin/lib/CMakeFiles/ini.dir/ini.c.o
[ 10%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/cc -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT bin/lib/CMakeFiles/ini.dir/ini.c.o -MF CMakeFiles/ini.dir/ini.c.o.d -o CMakeFiles/ini.dir/ini.c.o -c /build/reproducible-path/hinge-0.5.0/src/lib/ini.c
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin && /usr/bin/pandoc --from markdown --to man -s /build/reproducible-path/hinge-0.5.0/src/hinge.1.md -o hinge.1
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/cc -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT bin/lib/CMakeFiles/DB.dir/DB.c.o -MF CMakeFiles/DB.dir/DB.c.o.d -o CMakeFiles/DB.dir/DB.c.o -c /build/reproducible-path/hinge-0.5.0/src/lib/DB.c
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 10%] Built target man
make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c: In function 'Load_QVs':
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:916:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
916 | fscanf(istub,DB_NFILE,&nfiles);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:920:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
920 | { fscanf(istub,DB_FDATA,&last,fname,prolog);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:925:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
925 | { fscanf(istub,DB_FDATA,&last,fname,prolog);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/cc -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT bin/lib/CMakeFiles/LA.dir/align.c.o -MF CMakeFiles/LA.dir/align.c.o.d -o CMakeFiles/LA.dir/align.c.o -c /build/reproducible-path/hinge-0.5.0/src/lib/align.c
[ 17%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/c++ -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o -MF CMakeFiles/ini.dir/INIReader.cpp.o.d -o CMakeFiles/ini.dir/INIReader.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/lib/INIReader.cpp
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c: In function 'Open_DB':
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:533:11: warning: 'free' called on pointer 'p' with nonzero offset 40 [-Wfree-nonheap-object]
533 | free(reads);
| ^~~~~~~~~~~
In function 'Malloc',
inlined from 'Open_DB' at /build/reproducible-path/hinge-0.5.0/src/lib/DB.c:525:29:
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:84:12: note: returned from 'malloc'
84 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c: In function 'Read_All_Sequences':
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:1587:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object]
1587 | free(seq);
| ^~~~~~~~~
In function 'Malloc',
inlined from 'Read_All_Sequences' at /build/reproducible-path/hinge-0.5.0/src/lib/DB.c:1564:18:
/build/reproducible-path/hinge-0.5.0/src/lib/DB.c:84:12: note: returned from 'malloc'
84 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
[ 20%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/cc -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT bin/lib/CMakeFiles/DB.dir/QV.c.o -MF CMakeFiles/DB.dir/QV.c.o.d -o CMakeFiles/DB.dir/QV.c.o -c /build/reproducible-path/hinge-0.5.0/src/lib/QV.c
/build/reproducible-path/hinge-0.5.0/src/lib/QV.c: In function 'Build_Table':
/build/reproducible-path/hinge-0.5.0/src/lib/QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
/build/reproducible-path/hinge-0.5.0/src/lib/QV.c: In function 'Huffman':
/build/reproducible-path/hinge-0.5.0/src/lib/QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
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cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/lib && /usr/bin/cc -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -MF CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o.d -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /build/reproducible-path/hinge-0.5.0/src/lib/kmer_lookup.c
/build/reproducible-path/hinge-0.5.0/src/lib/kmer_lookup.c: In function 'find_best_aln_range':
/build/reproducible-path/hinge-0.5.0/src/lib/kmer_lookup.c:347:14: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
347 | q_coor = calloc( km_ptr->count, sizeof(seq_coor_t) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/hinge-0.5.0/src/lib/kmer_lookup.c:56:
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
/build/reproducible-path/hinge-0.5.0/src/lib/kmer_lookup.c:348:14: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
348 | t_coor = calloc( km_ptr->count, sizeof(seq_coor_t) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
[ 37%] Linking C static library libDB.a
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/usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o
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/build/reproducible-path/hinge-0.5.0/src/lib/LAInterface.cpp: In member function 'void LAInterface::getOverlapw(std::vector<LOverlap*>&, int, int)':
/build/reproducible-path/hinge-0.5.0/src/lib/LAInterface.cpp:1666:22: warning: format '%d' expects argument of type 'int', but argument 2 has type 'int64' {aka 'long long int'} [-Wformat=]
1666 | printf("%d percent finished\n", j/(novl/100));
| ~^ ~~~~~~~~~~~~
| | |
| int int64 {aka long long int}
| %lld
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cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/filter && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o -MF CMakeFiles/Reads_filter.dir/filter.cpp.o.d -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/filter/filter.cpp
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/maximal && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -MF CMakeFiles/get_maximal_reads.dir/maximal.cpp.o.d -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/maximal/maximal.cpp
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o -MF CMakeFiles/draft_assembly.dir/draft.cpp.o.d -o CMakeFiles/draft_assembly.dir/draft.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/consensus/draft.cpp
/build/reproducible-path/hinge-0.5.0/src/consensus/draft.cpp: In function 'int draft_assembly_ctg(std::vector<std::tuple<Node, Node, int> >&, LAInterface&, std::vector<LAlignment*>&, std::unordered_map<int, std::vector<LOverlap*> >&, std::unordered_map<int, std::unordered_map<int, std::vector<LOverlap*> > >&, std::vector<Read*>&, int, int, int, int, int, bool, bool, std::string&)':
/build/reproducible-path/hinge-0.5.0/src/consensus/draft.cpp:514:24: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<std::vector<std::pair<int, int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
514 | printf("In total %lu lanes\n", lanes.size());
| ~~^ ~~~~~~~~~~~~
| | |
| long unsigned int std::vector<std::vector<std::pair<int, int> > >::size_type {aka unsigned int}
| %u
[ 79%] Linking CXX executable get_maximal_reads
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/maximal && /usr/bin/cmake -E cmake_link_script CMakeFiles/get_maximal_reads.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -o get_maximal_reads -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 79%] Built target get_maximal_reads
make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src/consensus /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 82%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o -MF CMakeFiles/consensus.dir/consensus.cpp.o.d -o CMakeFiles/consensus.dir/consensus.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/consensus/consensus.cpp
/build/reproducible-path/hinge-0.5.0/src/consensus/consensus.cpp: In function 'int main(int, char**)':
/build/reproducible-path/hinge-0.5.0/src/consensus/consensus.cpp:126:15: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<LAlignment*>::size_type' {aka 'unsigned int'} [-Wformat=]
126 | printf("%lu\n", res.size());
| ~~^ ~~~~~~~~~~
| | |
| | std::vector<LAlignment*>::size_type {aka unsigned int}
| long unsigned int
| %u
/build/reproducible-path/hinge-0.5.0/src/consensus/consensus.cpp:137:22: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector<LAlignment*>::size_type' {aka 'unsigned int'} [-Wformat=]
137 | printf("%d %lu\n", i, idx[i].size());
| ~~^ ~~~~~~~~~~~~~
| | |
| long unsigned int std::vector<LAlignment*>::size_type {aka unsigned int}
| %u
[ 86%] Linking CXX executable Reads_filter
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz
[ 89%] Linking CXX executable consensus
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/consensus.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/consensus.dir/consensus.cpp.o -o consensus -lfmt ../lib/libLAInterface.a ../lib/libfalcon.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 89%] Built target consensus
make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hinge-0.5.0 /build/reproducible-path/hinge-0.5.0/src/layout /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/layout /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build
make[3]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 93%] Building CXX object bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/layout && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DSPDLOG_FMT_EXTERNAL -I/build/reproducible-path/hinge-0.5.0/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -MD -MT bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o -MF CMakeFiles/hinging.dir/hinging.cpp.o.d -o CMakeFiles/hinging.dir/hinging.cpp.o -c /build/reproducible-path/hinge-0.5.0/src/layout/hinging.cpp
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 93%] Built target Reads_filter
[ 96%] Linking CXX executable draft_assembly
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/draft_assembly.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/draft_assembly.dir/draft.cpp.o -o draft_assembly -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libfalcon.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[ 96%] Built target draft_assembly
[100%] Linking CXX executable hinging
cd /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/bin/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinging.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hinging.dir/hinging.cpp.o -o hinging -lfmt ../lib/libLAInterface.a ../lib/libini.a /usr/lib/arm-linux-gnueabihf/libboost_graph.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz /usr/lib/arm-linux-gnueabihf/libboost_regex.a
make[3]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
[100%] Built target hinging
make[2]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/hinge/
cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/hinge-0.5.0/debian/hinge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/build/reproducible-path/hinge-0.5.0 -B/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/fasta_to_fastq.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parallel_draw_large.sh
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/interface_utils.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_path.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_nctc.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_hgraph_nogt.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_and_annotate.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_annotate_clip_ends.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/split_las.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/random_condensation.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_read.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_create_gfa_compute_n50.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup_w_repeat.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/repeat_annotate_reads.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping3.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_parse_read.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_with_gt.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup_region.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/compute_n50_from_draft.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/Visualise_graph.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pruning_and_clipping.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/add_groundtruth_json.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_parse_alignment.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/clip_ends.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_qv.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/add_groundtruth.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw_pileup_region.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_consensus_norevcomp.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parallel_draw.sh
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/merge_hinges.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_single_strand.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_path_norevcomp.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_NCTC_json.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/unitig.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_hgraph.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly_not_perfect.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/download_NCTC_pipeline.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_alignment.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/longest_path.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_consensus_gfa.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_annotation.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pruning_and_clipping_nanopore.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pileup.ipynb
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping2.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw_pileup_region_find_bridges.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/connected.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_bandage_file.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/correct_head.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_consensus.py
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/share/man/man1/hinge.1
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/bin/hinge
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/Reads_filter
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_maximal_reads
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/consensus
-- Installing: /build/reproducible-path/hinge-0.5.0/debian/hinge/usr/lib/hinge/hinging
make[1]: Leaving directory '/build/reproducible-path/hinge-0.5.0/obj-arm-linux-gnueabihf'
dh_installdocs
dh_installchangelogs
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/hinge-0.5.0'
dh_installexamples
# only install nominal.ini from the utils/ directory, but preserve
# the directory structure (since demo scripts expect it)
mkdir -p debian/hinge/usr/share/doc/hinge/examples/utils \
&& cp utils/nominal.ini debian/hinge/usr/share/doc/hinge/examples/utils
make[1]: Leaving directory '/build/reproducible-path/hinge-0.5.0'
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/hinge/usr/lib/hinge/draft_assembly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hinge/usr/lib/hinge/hinging contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hinge/usr/lib/hinge/consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hinge/usr/lib/hinge/get_maximal_reads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/hinge/usr/lib/hinge/Reads_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'hinge-dbgsym' in '../hinge-dbgsym_0.5.0-7_armhf.deb'.
dpkg-deb: building package 'hinge' in '../hinge_0.5.0-7_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../hinge_0.5.0-7_armhf.buildinfo
dpkg-genchanges --build=binary -O../hinge_0.5.0-7_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2109 and its subdirectories
I: Current time: Sun Nov 5 06:16:08 -12 2023
I: pbuilder-time-stamp: 1699208168
Sun Nov 5 18:17:00 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net.
Sun Nov 5 18:17:00 UTC 2023 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net.
Sun Nov 5 18:33:14 UTC 2023 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net.
Sun Nov 5 18:33:17 UTC 2023 I: hinge_0.5.0-7_armhf.changes:
Format: 1.8
Date: Wed, 22 Dec 2021 08:21:12 +0100
Source: hinge
Binary: hinge hinge-dbgsym
Architecture: armhf
Version: 0.5.0-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
hinge - long read genome assembler based on hinging
Changes:
hinge (0.5.0-7) unstable; urgency=medium
.
* Packaging update
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* No tab in license text (routine-update)
* No need to exclude files any more in d/copyright
Checksums-Sha1:
16e8cad3084083da1812dcb861401c6426a747af 8619588 hinge-dbgsym_0.5.0-7_armhf.deb
cac2a629628fa9bfa346a2c4db837866899b3efc 10509 hinge_0.5.0-7_armhf.buildinfo
f8c99e97877d4f3716dd4617cfd40206fb82896a 435600 hinge_0.5.0-7_armhf.deb
Checksums-Sha256:
8b66b26c3fb827f35ed7c0a896cf1156b664d849e438708e600a025f2e4c50d6 8619588 hinge-dbgsym_0.5.0-7_armhf.deb
c29fa480c85e6341f0df8cfd375bbd6224dc0266f57cab37bc7329efd4a67d00 10509 hinge_0.5.0-7_armhf.buildinfo
6c24123387fa5b0f844f3316ddd91eb53319bf20dedc70254298a5c2604c7cb0 435600 hinge_0.5.0-7_armhf.deb
Files:
60a56376d0f56dd8b04e5dd154f59c89 8619588 debug optional hinge-dbgsym_0.5.0-7_armhf.deb
f7a8356119f67ba678c62ae6788fc1c8 10509 science optional hinge_0.5.0-7_armhf.buildinfo
d7aa88bffabcb22951dfbcb2920aae5d 435600 science optional hinge_0.5.0-7_armhf.deb
Sun Nov 5 18:33:18 UTC 2023 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/hinge_0.5.0-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/hinge_0.5.0-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/hinge_0.5.0-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/b1/hinge_0.5.0-7_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.KJk75Q4q/b2/hinge_0.5.0-7_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.347s)
0.347s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.090s)
0.089s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Sun Nov 5 18:33:19 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Sun Nov 5 18:33:19 UTC 2023 I: hinge from bookworm built successfully and reproducibly on armhf.
Sun Nov 5 18:33:20 UTC 2023 I: Submitting .buildinfo files to external archives:
Sun Nov 5 18:33:20 UTC 2023 I: Submitting 12K b1/hinge_0.5.0-7_armhf.buildinfo.asc
Sun Nov 5 18:33:50 UTC 2023 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit
Sun Nov 5 18:33:50 UTC 2023 I: Submitting 12K b2/hinge_0.5.0-7_armhf.buildinfo.asc
Sun Nov 5 18:34:20 UTC 2023 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit
Sun Nov 5 18:34:20 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Nov 5 18:34:20 UTC 2023 I: Done submitting .buildinfo files.
Sun Nov 5 18:34:20 UTC 2023 I: Removing signed hinge_0.5.0-7_armhf.buildinfo.asc files:
removed './b1/hinge_0.5.0-7_armhf.buildinfo.asc'
removed './b2/hinge_0.5.0-7_armhf.buildinfo.asc'