Thu May 18 19:21:05 UTC 2023 I: starting to build libbio-db-ncbihelper-perl/bookworm/armhf on jenkins on '2023-05-18 19:20'
Thu May 18 19:21:05 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/496/console.log
Thu May 18 19:21:05 UTC 2023 I: Downloading source for bookworm/libbio-db-ncbihelper-perl=1.7.7-1
--2023-05-18 19:21:05-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbio-db-ncbihelper-perl/libbio-db-ncbihelper-perl_1.7.7-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2516 (2.5K) [text/prs.lines.tag]
Saving to: ‘libbio-db-ncbihelper-perl_1.7.7-1.dsc’
0K .. 100% 9.75M=0s
2023-05-18 19:21:05 (9.75 MB/s) - ‘libbio-db-ncbihelper-perl_1.7.7-1.dsc’ saved [2516/2516]
Thu May 18 19:21:05 UTC 2023 I: libbio-db-ncbihelper-perl_1.7.7-1.dsc
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Hash: SHA512
Format: 3.0 (quilt)
Source: libbio-db-ncbihelper-perl
Binary: libbio-db-ncbihelper-perl
Architecture: all
Version: 1.7.7-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://metacpan.org/release/Bio-DB-NCBIHelper
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl.git
Testsuite: autopkgtest
Testsuite-Triggers: @builddeps@, pkg-perl-autopkgtest
Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: libbio-perl-perl, libbio-asn1-entrezgene-perl (>> 1.730), libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl
Package-List:
libbio-db-ncbihelper-perl deb perl optional arch=all
Checksums-Sha1:
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ac0fe2792bed56215aad90d6ba1942df1c89a03e3111b9882c71e0741146cee8 3248 libbio-db-ncbihelper-perl_1.7.7-1.debian.tar.xz
Files:
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5b9d916074e21f2bd1d53945103875b5 3248 libbio-db-ncbihelper-perl_1.7.7-1.debian.tar.xz
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Thu May 18 19:21:05 UTC 2023 I: Checking whether the package is not for us
Thu May 18 19:21:05 UTC 2023 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net.
Thu May 18 19:21:05 UTC 2023 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net.
Thu May 18 19:24:20 UTC 2023 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu May 18 07:21:18 -12 2023
I: pbuilder-time-stamp: 1684437678
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-db-ncbihelper-perl_1.7.7-1.dsc]
I: copying [./libbio-db-ncbihelper-perl_1.7.7.orig.tar.gz]
I: copying [./libbio-db-ncbihelper-perl_1.7.7-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Feb 24 08:06:03 2022 -12
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-db-ncbihelper-perl_1.7.7-1.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-db-ncbihelper-perl in libbio-db-ncbihelper-perl-1.7.7
dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.7.orig.tar.gz
dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.7-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_tests
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/28829/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='9022a2c60ff44d689c5c9cc9640024a8'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='28829'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/pbuilderrc_gH2X --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/b1 --logfile b1/build.log libbio-db-ncbihelper-perl_1.7.7-1.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt64b 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux
I: ls -l /bin
total 5072
-rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 67632 Sep 20 2022 cat
-rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 67684 Sep 20 2022 chown
-rwxr-xr-x 1 root root 133532 Sep 20 2022 cp
-rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 133220 Sep 20 2022 date
-rwxr-xr-x 1 root root 67732 Sep 20 2022 dd
-rwxr-xr-x 1 root root 68104 Sep 20 2022 df
-rwxr-xr-x 1 root root 133632 Sep 20 2022 dir
-rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 67560 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 67548 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt
-rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount
-rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 67720 Sep 20 2022 ln
-rwxr-xr-x 1 root root 35132 Mar 22 21:51 login
-rwxr-xr-x 1 root root 133632 Sep 20 2022 ls
-rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk
-rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 38504 Mar 22 21:02 more
-rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount
-rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint
-rwxr-xr-x 1 root root 133532 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
-rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 67672 Sep 20 2022 rm
-rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 67644 Sep 20 2022 stty
-rwsr-xr-x 1 root root 50800 Mar 22 21:02 su
-rwxr-xr-x 1 root root 67584 Sep 20 2022 sync
-rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 133224 Sep 20 2022 touch
-rwxr-xr-x 1 root root 67548 Sep 20 2022 true
-rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount
-rwxr-xr-x 1 root root 67572 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/28829/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-asn1-entrezgene-perl (>> 1.730), libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19329 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-asn1-entrezgene-perl (>> 1.730); however:
Package libbio-asn1-entrezgene-perl is not installed.
pbuilder-satisfydepends-dummy depends on libcache-cache-perl; however:
Package libcache-cache-perl is not installed.
pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however:
Package libcgi-pm-perl is not installed.
pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however:
Package libhttp-message-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-exception-perl; however:
Package libtest-exception-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however:
Package libtest-requiresinternet-perl is not installed.
pbuilder-satisfydepends-dummy depends on liburi-perl; however:
Package liburi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libwww-perl; however:
Package libwww-perl is not installed.
pbuilder-satisfydepends-dummy depends on libxml-twig-perl; however:
Package libxml-twig-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-asn1-entrezgene-perl{a} libbio-cluster-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcache-cache-perl{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libencode-locale-perl{a} liberror-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libipc-sharelite-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libregexp-ipv6-perl{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-perl-run-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget
0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.5 MB of archives. After unpacking 88.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main armhf netbase all 6.4 [12.8 kB]
Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.8-1 [1373 kB]
Get: 4 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB]
Get: 8 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB]
Get: 9 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 10 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB]
Get: 11 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB]
Get: 12 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB]
Get: 13 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB]
Get: 14 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB]
Get: 16 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 21 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB]
Get: 22 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 23 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 24 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get: 25 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 26 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 27 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB]
Get: 28 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB]
Get: 29 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB]
Get: 30 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB]
Get: 31 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB]
Get: 32 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 33 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 34 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf libio-string-perl all 1.08-4 [12.1 kB]
Get: 37 http://deb.debian.org/debian bookworm/main armhf libdata-stag-perl all 0.14-3 [448 kB]
Get: 38 http://deb.debian.org/debian bookworm/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 39 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB]
Get: 40 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 41 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 43 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 44 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 45 http://deb.debian.org/debian bookworm/main armhf libfile-listing-perl all 6.15-1 [12.6 kB]
Get: 46 http://deb.debian.org/debian bookworm/main armhf libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get: 47 http://deb.debian.org/debian bookworm/main armhf libhtml-parser-perl armhf 3.81-1 [97.4 kB]
Get: 48 http://deb.debian.org/debian bookworm/main armhf libhtml-tree-perl all 5.07-3 [211 kB]
Get: 49 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB]
Get: 50 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get: 51 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 52 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 53 http://deb.debian.org/debian bookworm/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 54 http://deb.debian.org/debian bookworm/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 55 http://deb.debian.org/debian bookworm/main armhf perl-openssl-defaults armhf 7+b1 [7916 B]
Get: 56 http://deb.debian.org/debian bookworm/main armhf libnet-ssleay-perl armhf 1.92-2+b1 [298 kB]
Get: 57 http://deb.debian.org/debian bookworm/main armhf libio-socket-ssl-perl all 2.081-2 [219 kB]
Get: 58 http://deb.debian.org/debian bookworm/main armhf libnet-http-perl all 6.22-1 [25.3 kB]
Get: 59 http://deb.debian.org/debian bookworm/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 60 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 61 http://deb.debian.org/debian bookworm/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main armhf libwww-perl all 6.68-1 [186 kB]
Get: 63 http://deb.debian.org/debian bookworm/main armhf libxml-parser-perl armhf 2.46-4 [197 kB]
Get: 64 http://deb.debian.org/debian bookworm/main armhf libxml-twig-perl all 1:3.52-2 [181 kB]
Get: 65 http://deb.debian.org/debian bookworm/main armhf libxml-writer-perl all 0.900-2 [26.8 kB]
Get: 66 http://deb.debian.org/debian bookworm/main armhf libbio-variation-perl all 1.7.5-3 [72.6 kB]
Get: 67 http://deb.debian.org/debian bookworm/main armhf libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get: 68 http://deb.debian.org/debian bookworm/main armhf libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get: 69 http://deb.debian.org/debian bookworm/main armhf libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get: 70 http://deb.debian.org/debian bookworm/main armhf libbio-cluster-perl all 1.7.3-6 [53.3 kB]
Get: 71 http://deb.debian.org/debian bookworm/main armhf libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB]
Get: 72 http://deb.debian.org/debian bookworm/main armhf liberror-perl all 0.17029-2 [29.0 kB]
Get: 73 http://deb.debian.org/debian bookworm/main armhf libipc-sharelite-perl armhf 0.17-5 [22.1 kB]
Get: 74 http://deb.debian.org/debian bookworm/main armhf libcache-cache-perl all 1.08-3 [63.4 kB]
Get: 75 http://deb.debian.org/debian bookworm/main armhf libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 76 http://deb.debian.org/debian bookworm/main armhf libcgi-pm-perl all 4.55-1 [220 kB]
Get: 77 http://deb.debian.org/debian bookworm/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get: 78 http://deb.debian.org/debian bookworm/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 79 http://deb.debian.org/debian bookworm/main armhf libexception-class-perl all 1.45-1 [34.6 kB]
Get: 80 http://deb.debian.org/debian bookworm/main armhf libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 81 http://deb.debian.org/debian bookworm/main armhf libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 82 http://deb.debian.org/debian bookworm/main armhf libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 83 http://deb.debian.org/debian bookworm/main armhf libtest-differences-perl all 0.69-1 [18.9 kB]
Get: 84 http://deb.debian.org/debian bookworm/main armhf libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 85 http://deb.debian.org/debian bookworm/main armhf libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 86 http://deb.debian.org/debian bookworm/main armhf libtest-most-perl all 0.38-1 [25.1 kB]
Get: 87 http://deb.debian.org/debian bookworm/main armhf libtest-requiresinternet-perl all 0.05-4 [6864 B]
Fetched 25.5 MB in 6s (4540 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package netbase.
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(Reading database ... 19329 files and directories currently installed.)
Preparing to unpack .../00-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package sensible-utils.
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Unpacking sensible-utils (0.0.17+nmu1) ...
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Unpacking openssl (3.0.8-1) ...
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Unpacking ca-certificates (20230311) ...
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Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libmagic1:armhf (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../09-groff-base_1.22.4-10_armhf.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:armhf.
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Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
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Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.19-3) ...
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../17-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../19-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
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Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../23-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
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Unpacking libelf1:armhf (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../27-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../28-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../29-libxml2_2.9.14+dfsg-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../30-gettext_0.21-12_armhf.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
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Unpacking debhelper (13.11.4) ...
Selecting previously unselected package libalgorithm-diff-perl.
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Unpacking libalgorithm-diff-perl (1.201-1) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../35-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libdata-stag-perl.
Preparing to unpack .../36-libdata-stag-perl_0.14-3_all.deb ...
Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
Preparing to unpack .../37-libbio-perl-perl_1.7.8-1_all.deb ...
Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libexpat1:armhf.
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Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package libregexp-ipv6-perl.
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Unpacking libregexp-ipv6-perl (0.03-3) ...
Selecting previously unselected package liburi-perl.
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Unpacking liburi-perl (5.17-1) ...
Selecting previously unselected package libencode-locale-perl.
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Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libtimedate-perl.
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Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libhttp-date-perl.
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Unpacking libhttp-date-perl (6.05-2) ...
Selecting previously unselected package libfile-listing-perl.
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Unpacking libfile-listing-perl (6.15-1) ...
Selecting previously unselected package libhtml-tagset-perl.
Preparing to unpack .../45-libhtml-tagset-perl_3.20-6_all.deb ...
Unpacking libhtml-tagset-perl (3.20-6) ...
Selecting previously unselected package libhtml-parser-perl:armhf.
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Unpacking libhtml-parser-perl:armhf (3.81-1) ...
Selecting previously unselected package libhtml-tree-perl.
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Unpacking libhtml-tree-perl (5.07-3) ...
Selecting previously unselected package libclone-perl:armhf.
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Unpacking libclone-perl:armhf (0.46-1) ...
Selecting previously unselected package libio-html-perl.
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Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
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Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../51-libhttp-message-perl_6.44-1_all.deb ...
Unpacking libhttp-message-perl (6.44-1) ...
Selecting previously unselected package libhttp-cookies-perl.
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Unpacking libhttp-cookies-perl (6.10-1) ...
Selecting previously unselected package libhttp-negotiate-perl.
Preparing to unpack .../53-libhttp-negotiate-perl_6.01-2_all.deb ...
Unpacking libhttp-negotiate-perl (6.01-2) ...
Selecting previously unselected package perl-openssl-defaults:armhf.
Preparing to unpack .../54-perl-openssl-defaults_7+b1_armhf.deb ...
Unpacking perl-openssl-defaults:armhf (7+b1) ...
Selecting previously unselected package libnet-ssleay-perl:armhf.
Preparing to unpack .../55-libnet-ssleay-perl_1.92-2+b1_armhf.deb ...
Unpacking libnet-ssleay-perl:armhf (1.92-2+b1) ...
Selecting previously unselected package libio-socket-ssl-perl.
Preparing to unpack .../56-libio-socket-ssl-perl_2.081-2_all.deb ...
Unpacking libio-socket-ssl-perl (2.081-2) ...
Selecting previously unselected package libnet-http-perl.
Preparing to unpack .../57-libnet-http-perl_6.22-1_all.deb ...
Unpacking libnet-http-perl (6.22-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
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Unpacking liblwp-protocol-https-perl (6.10-1) ...
Selecting previously unselected package libtry-tiny-perl.
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Unpacking libtry-tiny-perl (0.31-2) ...
Selecting previously unselected package libwww-robotrules-perl.
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Unpacking libwww-robotrules-perl (6.02-1) ...
Selecting previously unselected package libwww-perl.
Preparing to unpack .../61-libwww-perl_6.68-1_all.deb ...
Unpacking libwww-perl (6.68-1) ...
Selecting previously unselected package libxml-parser-perl.
Preparing to unpack .../62-libxml-parser-perl_2.46-4_armhf.deb ...
Unpacking libxml-parser-perl (2.46-4) ...
Selecting previously unselected package libxml-twig-perl.
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Unpacking libxml-twig-perl (1:3.52-2) ...
Selecting previously unselected package libxml-writer-perl.
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Unpacking libxml-writer-perl (0.900-2) ...
Selecting previously unselected package libbio-variation-perl.
Preparing to unpack .../65-libbio-variation-perl_1.7.5-3_all.deb ...
Unpacking libbio-variation-perl (1.7.5-3) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../66-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../67-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
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Unpacking libxml-sax-perl (1.02+dfsg-3) ...
Selecting previously unselected package libbio-cluster-perl.
Preparing to unpack .../69-libbio-cluster-perl_1.7.3-6_all.deb ...
Unpacking libbio-cluster-perl (1.7.3-6) ...
Selecting previously unselected package libbio-asn1-entrezgene-perl.
Preparing to unpack .../70-libbio-asn1-entrezgene-perl_1.730-2_all.deb ...
Unpacking libbio-asn1-entrezgene-perl (1.730-2) ...
Selecting previously unselected package liberror-perl.
Preparing to unpack .../71-liberror-perl_0.17029-2_all.deb ...
Unpacking liberror-perl (0.17029-2) ...
Selecting previously unselected package libipc-sharelite-perl.
Preparing to unpack .../72-libipc-sharelite-perl_0.17-5_armhf.deb ...
Unpacking libipc-sharelite-perl (0.17-5) ...
Selecting previously unselected package libcache-cache-perl.
Preparing to unpack .../73-libcache-cache-perl_1.08-3_all.deb ...
Unpacking libcache-cache-perl (1.08-3) ...
Selecting previously unselected package libcapture-tiny-perl.
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Unpacking libcapture-tiny-perl (0.48-2) ...
Selecting previously unselected package libcgi-pm-perl.
Preparing to unpack .../75-libcgi-pm-perl_4.55-1_all.deb ...
Unpacking libcgi-pm-perl (4.55-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
Preparing to unpack .../76-libclass-data-inheritable-perl_0.08-3_all.deb ...
Unpacking libclass-data-inheritable-perl (0.08-3) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../77-libdevel-stacktrace-perl_2.0400-2_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0400-2) ...
Selecting previously unselected package libexception-class-perl.
Preparing to unpack .../78-libexception-class-perl_1.45-1_all.deb ...
Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libsub-uplevel-perl.
Preparing to unpack .../79-libsub-uplevel-perl_0.2800-3_all.deb ...
Unpacking libsub-uplevel-perl (0.2800-3) ...
Selecting previously unselected package libtest-deep-perl.
Preparing to unpack .../80-libtest-deep-perl_1.204-1_all.deb ...
Unpacking libtest-deep-perl (1.204-1) ...
Selecting previously unselected package libtext-diff-perl.
Preparing to unpack .../81-libtext-diff-perl_1.45-2_all.deb ...
Unpacking libtext-diff-perl (1.45-2) ...
Selecting previously unselected package libtest-differences-perl.
Preparing to unpack .../82-libtest-differences-perl_0.69-1_all.deb ...
Unpacking libtest-differences-perl (0.69-1) ...
Selecting previously unselected package libtest-exception-perl.
Preparing to unpack .../83-libtest-exception-perl_0.43-3_all.deb ...
Unpacking libtest-exception-perl (0.43-3) ...
Selecting previously unselected package libtest-warn-perl.
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Unpacking libtest-warn-perl (0.37-2) ...
Selecting previously unselected package libtest-most-perl.
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Unpacking libtest-most-perl (0.38-1) ...
Selecting previously unselected package libtest-requiresinternet-perl.
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Unpacking libtest-requiresinternet-perl (0.05-4) ...
Setting up libexpat1:armhf (2.5.0-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
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done.
Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/libbio-db-ncbihelper-perl-1.7.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-ncbihelper-perl_1.7.7-1_source.changes
dpkg-buildpackage: info: source package libbio-db-ncbihelper-perl
dpkg-buildpackage: info: source version 1.7.7-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7'
dh_auto_configure --
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-db-ncbihelper-perl-1.7.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/libbio-db-ncbihelper-perl-1.7.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::DB::NCBIHelper
Writing MYMETA.yml and MYMETA.json
make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7'
dh_auto_build
make -j3
make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7'
cp lib/Bio/DB/Query/GenBank.pm blib/lib/Bio/DB/Query/GenBank.pm
cp lib/Bio/DB/EntrezGene.pm blib/lib/Bio/DB/EntrezGene.pm
cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm
cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm
cp lib/Bio/DB/GenPept.pm blib/lib/Bio/DB/GenPept.pm
cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm
cp bin/bp_biofetch_genbank_proxy blib/script/bp_biofetch_genbank_proxy
cp bin/bp_download_query_genbank blib/script/bp_download_query_genbank
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank
cp bin/bp_query_entrez_taxa blib/script/bp_query_entrez_taxa
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_query_entrez_taxa
Manifying 3 pod documents
Manifying 6 pod documents
make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7'
dh_auto_test
make -j3 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t .........
1..9
ok 1 - Bio/DB/EntrezGene.pm loaded ok
ok 2 - Bio/DB/GenBank.pm loaded ok
ok 3 - Bio/DB/GenPept.pm loaded ok
ok 4 - Bio/DB/NCBIHelper.pm loaded ok
ok 5 - Bio/DB/Query/GenBank.pm loaded ok
ok 6 - Bio/DB/Taxonomy/entrez.pm loaded ok
ok 7 - bin/bp_biofetch_genbank_proxy compiled ok
ok 8 - bin/bp_download_query_genbank compiled ok
ok 9 - bin/bp_query_entrez_taxa compiled ok
ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
t/EntrezGene.t ......... skipped: NO_NETWORK_TESTING
t/GenBank.t ............ skipped: NO_NETWORK_TESTING
t/GenPept.t ............ skipped: NO_NETWORK_TESTING
t/Query-Genbank.t ...... skipped: NO_NETWORK_TESTING
t/RefSeq.t ............. skipped: NO_NETWORK_TESTING
t/Taxonomy.t ........... skipped: NO_NETWORK_TESTING
All tests successful.
Files=9, Tests=9, 3 wallclock secs ( 0.08 usr 0.02 sys + 3.34 cusr 0.26 csys = 3.70 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-db-ncbihelper-perl/
make -j3 install DESTDIR=/build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7'
Manifying 3 pod documents
Manifying 6 pod documents
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/EntrezGene.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenBank.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenPept.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/NCBIHelper.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Taxonomy/entrez.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Query/GenBank.pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_biofetch_genbank_proxy.1p
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_download_query_genbank.1p
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_query_entrez_taxa.1p
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Query::GenBank.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::EntrezGene.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenBank.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenPept.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::NCBIHelper.3pm
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_query_entrez_taxa
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_biofetch_genbank_proxy
Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_download_query_genbank
make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-db-ncbihelper-perl' in '../libbio-db-ncbihelper-perl_1.7.7-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../libbio-db-ncbihelper-perl_1.7.7-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/28829 and its subdirectories
I: Current time: Thu May 18 07:24:13 -12 2023
I: pbuilder-time-stamp: 1684437853
Thu May 18 19:24:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net.
Thu May 18 19:24:23 UTC 2023 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net.
Thu May 18 19:27:36 UTC 2023 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net.
Thu May 18 19:27:40 UTC 2023 I: libbio-db-ncbihelper-perl_1.7.7-1_armhf.changes:
Format: 1.8
Date: Thu, 24 Feb 2022 20:55:23 +0100
Source: libbio-db-ncbihelper-perl
Binary: libbio-db-ncbihelper-perl
Architecture: all
Version: 1.7.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
libbio-db-ncbihelper-perl - collection of routines useful for queries to NCBI databases
Changes:
libbio-db-ncbihelper-perl (1.7.7-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Add salsa-ci.yml
.
[ Étienne Mollier ]
* d/control: add myself to uploaders
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Rules-Requires-Root: no (routine-update)
* watch file standard 4 (routine-update)
* d/t/control: replace needs-recommends by @builddeps@
* d/copyright: update year
Checksums-Sha1:
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96d838f95daadb277a98761152e663a13fdfba2f 6654 libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo
Checksums-Sha256:
756b1213474499545b01ac0b7ed5887c1ec731c2cdde283b4670bf7f1eaa2e95 58448 libbio-db-ncbihelper-perl_1.7.7-1_all.deb
b94998906984dca5125b21ab8d21b0364d9d0d9edd45d764c0c8078c7a088ac9 6654 libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo
Files:
84829d8ce8061bfa07858ceaaae807e2 58448 perl optional libbio-db-ncbihelper-perl_1.7.7-1_all.deb
0ed1542fb5af38b624f8291b1ca8eea6 6654 perl optional libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo
Thu May 18 19:27:41 UTC 2023 I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/libbio-db-ncbihelper-perl_1.7.7-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/libbio-db-ncbihelper-perl_1.7.7-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/libbio-db-ncbihelper-perl_1.7.7-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/b1/libbio-db-ncbihelper-perl_1.7.7-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.0bRdIUcO/b2/libbio-db-ncbihelper-perl_1.7.7-1_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.306s)
0.306s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.015s)
0.015s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Thu May 18 19:27:48 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Thu May 18 19:27:48 UTC 2023 I: libbio-db-ncbihelper-perl from bookworm built successfully and reproducibly on armhf.
Thu May 18 19:27:49 UTC 2023 I: Submitting .buildinfo files to external archives:
Thu May 18 19:27:49 UTC 2023 I: Submitting 8.0K b1/libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo.asc
Thu May 18 19:27:50 UTC 2023 I: Submitting 8.0K b2/libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo.asc
Thu May 18 19:27:51 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu May 18 19:27:51 UTC 2023 I: Done submitting .buildinfo files.
Thu May 18 19:27:51 UTC 2023 I: Removing signed libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo.asc files:
removed './b1/libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo.asc'
removed './b2/libbio-db-ncbihelper-perl_1.7.7-1_armhf.buildinfo.asc'