Fri Jun 9 00:29:18 UTC 2023 I: starting to build python-csb/bookworm/armhf on jenkins on '2023-06-09 00:28' Fri Jun 9 00:29:18 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_17/1637/console.log Fri Jun 9 00:29:18 UTC 2023 I: Downloading source for bookworm/python-csb=1.2.5+dfsg-8 --2023-06-09 00:29:18-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-csb/python-csb_1.2.5%2bdfsg-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2253 (2.2K) [text/prs.lines.tag] Saving to: ‘python-csb_1.2.5+dfsg-8.dsc’ 0K .. 100% 7.40M=0s 2023-06-09 00:29:18 (7.40 MB/s) - ‘python-csb_1.2.5+dfsg-8.dsc’ saved [2253/2253] Fri Jun 9 00:29:18 UTC 2023 I: python-csb_1.2.5+dfsg-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-csb Binary: python3-csb, csb Architecture: all Version: 1.2.5+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Tomas Di Domenico , Andreas Tille Homepage: https://github.com/csb-toolbox/CSB Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/python-csb Vcs-Git: https://salsa.debian.org/med-team/python-csb.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools Package-List: csb deb science optional arch=all python3-csb deb python optional arch=all Checksums-Sha1: bc4b0b5a5f2c4522bb1654d63aad73c62bf563e1 2999651 python-csb_1.2.5+dfsg.orig.tar.gz 3515f1676e943af6ec029792f1ebe9af1613807a 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz Checksums-Sha256: fb412c6e1b5ad136dc3527eb6ac77cb703fb5b18b47173fb637683de6ebe0941 2999651 python-csb_1.2.5+dfsg.orig.tar.gz 531f869033b25c8d6dac47b8329e9499fdb8969f8664a72efe84f35aa7e34fac 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz Files: 83c9fb8f55cea112073690299c568f08 2999651 python-csb_1.2.5+dfsg.orig.tar.gz a5d045bb0a3f023839d939c899cc296a 10604 python-csb_1.2.5+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOPYhQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEz5hAAj7Li9E12HTxmJtwdqDLOXEy4eNYYEpBC JC260nC6PNI+Xc006xNDdIizwJwIbZWrnZIDgpPxi+0dYty4o+r5dHihEM7fS+Ho 3ONtlHosR34GnnyHr637Q/4U7Jw84hzaxx4nBME3AY33ukKkISvYJrrGg2PmVaHQ FLcRWT8hjhyc9JX4QFrMHd57ocht1fbyVZC3Frt04WjNvP7b+vmE0MIBJ3kgRV27 KUYyzQJeRK8d0CqcmG29uZZ6ZOvKW4YO4/JszN6hJiMal80ufVT6n4PBUOgjg07M 9P2UNP1Vdi9IxOgt/9rpCvYkH8VOg0mbSY8V5RxBpIRnF6pqZIsKDZJpSnyVCjJQ mgclUextUtp4RhX3lvndfqQmlvqSUrTE7+nntBdp8M7cDVwBnFt8xG2g78gVazNj gD2ljANaYlYN7hveVEQhXuQ1sSRrgY3vgkRKgqI17PmAq/+/ztaE10nMSEDvxlJr kVM5D9Xftm3TtylkYeS5g824UwEzCVWUeFORLalJoICBMcxQW/eG2kxmWUK8Mhsk dn863Sbt+mNsRKIVi9hj4yH6j2xAqTDPdhKhRNxHHVWrg+8oOr6922zX/jAT8rvx r8uOtNwCfeP+7Jd1sfYRyzbpH+lXhZPNNkiBx/wBE9s1vTSg+JSR8shkH29BKYW3 M8q1MW7KAKQ= =QtFq -----END PGP SIGNATURE----- Fri Jun 9 00:29:18 UTC 2023 I: Checking whether the package is not for us Fri Jun 9 00:29:18 UTC 2023 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Fri Jun 9 00:29:18 UTC 2023 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Fri Jun 9 00:38:58 UTC 2023 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 8 12:29:30 -12 2023 I: pbuilder-time-stamp: 1686270570 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-csb_1.2.5+dfsg-8.dsc] I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-8.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 03:39:00 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-csb_1.2.5+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch dpkg-source: info: applying avoid-multiple-namespace.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32464/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='67e556f159204398a5b7a7d0282324bc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32464' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/pbuilderrc_s24N --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-8.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/32464/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 82.7 MB of archives. After unpacking 317 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 53 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 55 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 86 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2 [98.3 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2 [106 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 93 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B] Get: 100 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 104 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-4 [30.1 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-3 [95.4 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Fetched 82.7 MB in 7s (11.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19640 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20074 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../003-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../006-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../009-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../016-libtcl8.6_8.6.13+dfsg-2_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../017-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../018-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../019-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../020-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../021-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../022-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../023-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../024-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../025-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../026-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../027-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../028-libx11-6_2%3a1.8.4-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../029-libxrender1_1%3a0.9.10-1.1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../030-libxft2_2.3.6-1_armhf.deb ... Unpacking libxft2:armhf (2.3.6-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../031-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../032-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../033-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../034-libtk8.6_8.6.13-2_armhf.deb ... Unpacking libtk8.6:armhf (8.6.13-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../035-tk8.6-blt2.5_2.5.3+dfsg-4.1_armhf.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../036-blt_2.5.3+dfsg-4.1_armhf.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. 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Unpacking python3-setuptools (66.1.1-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up liblerc4:armhf (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:armhf (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up unicode-data (15.0.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libimagequant0:armhf (2.17.0-1) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.2.4-0.2) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:armhf (4.5.0-6) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libopenjp2-7:armhf (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:armhf (1.2.4-0.2) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:armhf (1.2.4-0.2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libxslt1.1:armhf (1.1.35-1) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:armhf (0.7.0-4.1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:armhf (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:armhf (3.11.2-3) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:armhf (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:armhf (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.bio.nmr.resources' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'csb.bio.nmr.resources' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'csb.bio.nmr.resources' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.test.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'csb.test.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'csb.test.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:240: set -e; \ cd /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build; \ PYTHONPATH=/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build PYTHONWARNINGS=d python3.11 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses import imp /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence '\s' """ /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok testGetAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok testNegative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok testPositive (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback testAtomContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok testAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok testCompare (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok testContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok testCutoff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok testPosition (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok testResidueContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok testFromAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok testFromShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok testFromString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok testGetAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok testMatch (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok testIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok testDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok testLen (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok testMaxIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok testMinIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok testNumProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok testProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) @see: [CSB 0000056] ... ok testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuxrsree0' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) @see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp20ldb5vp' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) @see: [CSB 0000031] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) @see: [CSB 0000052] ... ok testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing) @see: [CSB 0000045] ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp76jldn9o' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9fjhh9i8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpel0gfdec' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4p766w70' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplhrxw1jm' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpx8hjedy6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphf83b_fw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp13kukkh9' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) @see: [CSB 0000058] ... ok testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp71gzuslm' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyi0hn8er' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxx33zcda' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3iije_th' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3nfc9qb7' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_mzr61s4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_igkge54' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp72tznel8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpiwmb4kjg' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) @see: [CSB 0000122] ... ok testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) @see: [CSB 0000030] ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) @see: [CSB 0000029] ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgi7u2yjl' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp133x9_el' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok testConstrucor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok testFindBaseParameter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok testAssignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok testParameterChaining (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok testProperties (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok testParameterValidation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) @see: [CSB 0000132] ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ok testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq2kjwtw2' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... ok testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp65ikv06r' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpteli2ocl' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnxb7os9f' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsl5afa3i' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsytfnfch' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testComparison) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) r526 ... ok testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok ---------------------------------------------------------------------- Ran 697 tests in 288.428s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.bio.nmr.resources' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'csb.bio.nmr.resources' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'csb.bio.nmr.resources' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'csb.bio.nmr.resources' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'csb.test.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'csb.test.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'csb.test.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'csb.test.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/dssp.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/cs.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/mrc.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/fasta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/hhpred.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/noe.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/whatif.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/clans.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/procheck.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/tsv.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/procheck.py to procheck.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/fasta.py to fasta.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/dssp.py to dssp.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/whatif.py to whatif.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/psipred.py to psipred.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/clans.py to clans.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/svg.py to svg.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/noe.py to noe.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/vasco.py to vasco.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/mrc.py to mrc.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/cs.py to cs.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/ars.py to ars.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/maxent.py to maxent.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/rand.py to rand.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/build.py to build.cpython-311.pyc /usr/lib/python3.11/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.11/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/plots.py to plots.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/tsv.py to tsv.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/helloworld.py to helloworld.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/precision.py to precision.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfite.py to bfite.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/csfrag.py to csfrag.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/embd.py to embd.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfit.py to bfit.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/promix.py to promix.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/wham.py to wham.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-311.pyc /usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/app.py to app.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/integrators.py to integrators.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-8_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-8_armhf.buildinfo dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32464 and its subdirectories I: Current time: Thu Jun 8 12:38:49 -12 2023 I: pbuilder-time-stamp: 1686271129 Fri Jun 9 00:39:01 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Fri Jun 9 00:39:01 UTC 2023 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Fri Jun 9 00:46:50 UTC 2023 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Fri Jun 9 00:46:54 UTC 2023 I: python-csb_1.2.5+dfsg-8_armhf.changes: Format: 1.8 Date: Tue, 06 Dec 2022 16:29:02 +0100 Source: python-csb Binary: csb python3-csb Architecture: all Version: 1.2.5+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: csb - Computational Structural Biology Toolbox (CSB) python3-csb - Python framework for structural bioinformatics (Python3 version) Changes: python-csb (1.2.5+dfsg-8) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 251e20498ab748303d59e267cada2eebb49f0bc8 12480 csb_1.2.5+dfsg-8_all.deb 304d4e4979764ed366830c671bbaea3c9e7d155e 7705 python-csb_1.2.5+dfsg-8_armhf.buildinfo e3df08096e8eb3fff4a52f7688f560db7e13356e 2174292 python3-csb_1.2.5+dfsg-8_all.deb Checksums-Sha256: 0606d57c191e2c355b54fe0021192653111c472b0a55b7688563945e3a881498 12480 csb_1.2.5+dfsg-8_all.deb 0dc7479784619b5ed8c5df2a9c2a9fa84dbf366f58d96120ca8f4202e1afa29a 7705 python-csb_1.2.5+dfsg-8_armhf.buildinfo 02bbd2044b28f0fa83c11048a79ccdfbd36b66c2f77f9bb139a6e91d02de816e 2174292 python3-csb_1.2.5+dfsg-8_all.deb Files: 988641bac2623500e678f0fe3f832c13 12480 science optional csb_1.2.5+dfsg-8_all.deb 76e7d85cf51ee83f38d5ed59b1b48f22 7705 science optional python-csb_1.2.5+dfsg-8_armhf.buildinfo 2bfdced480460c9efff2a9ee1c4c8fd5 2174292 python optional python3-csb_1.2.5+dfsg-8_all.deb Fri Jun 9 00:46:58 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/python-csb_1.2.5+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/python-csb_1.2.5+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/python-csb_1.2.5+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/b1/python-csb_1.2.5+dfsg-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/b2/python-csb_1.2.5+dfsg-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.468s) 2.468s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.040s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Jun 9 00:47:01 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 9 00:47:01 UTC 2023 I: python-csb from bookworm built successfully and reproducibly on armhf. Fri Jun 9 00:47:03 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jun 9 00:47:03 UTC 2023 I: Submitting 12K b1/python-csb_1.2.5+dfsg-8_armhf.buildinfo.asc Fri Jun 9 00:47:03 UTC 2023 I: Submitting 12K b2/python-csb_1.2.5+dfsg-8_armhf.buildinfo.asc Fri Jun 9 00:47:05 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 9 00:47:05 UTC 2023 I: Done submitting .buildinfo files. Fri Jun 9 00:47:05 UTC 2023 I: Removing signed python-csb_1.2.5+dfsg-8_armhf.buildinfo.asc files: removed './b1/python-csb_1.2.5+dfsg-8_armhf.buildinfo.asc' removed './b2/python-csb_1.2.5+dfsg-8_armhf.buildinfo.asc'