Thu Apr 20 11:34:19 UTC 2023 I: starting to build beast-mcmc/bookworm/i386 on jenkins on '2023-04-20 11:34'
Thu Apr 20 11:34:19 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/546/console.log
Thu Apr 20 11:34:19 UTC 2023 I: Downloading source for bookworm/beast-mcmc=1.10.4+dfsg-5
--2023-04-20 11:34:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/beast-mcmc/beast-mcmc_1.10.4%2bdfsg-5.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2472 (2.4K) [text/prs.lines.tag]
Saving to: ‘beast-mcmc_1.10.4+dfsg-5.dsc’
0K .. 100% 239M=0s
2023-04-20 11:34:19 (239 MB/s) - ‘beast-mcmc_1.10.4+dfsg-5.dsc’ saved [2472/2472]
Thu Apr 20 11:34:19 UTC 2023 I: beast-mcmc_1.10.4+dfsg-5.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: beast-mcmc
Binary: beast-mcmc, libnucleotidelikelihoodcore0, beast-mcmc-examples
Architecture: any all
Version: 1.10.4+dfsg-5
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Olivier Sallou <osallou@debian.org>
Homepage: http://beast.bio.ed.ac.uk/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/beast-mcmc
Vcs-Git: https://salsa.debian.org/med-team/beast-mcmc.git
Build-Depends: debhelper-compat (= 13), javahelper, ant, ant-optional, default-jdk, libjebl2-java, libjam-java, figtree, liboptions-java, libhmsbeagle-java, libcolt-free-java, libmpj-java, r-cran-rjava, libcommons-math-java, libjdom1-java, junit4, libmtj-java, libitext1-java, libejml-java (>= 0.41), libjlapack-java
Package-List:
beast-mcmc deb science optional arch=all
beast-mcmc-examples deb doc optional arch=all
libnucleotidelikelihoodcore0 deb libs optional arch=any
Checksums-Sha1:
17fad53edfd534473a29c074cbb5cf674a2e55df 5022024 beast-mcmc_1.10.4+dfsg.orig.tar.xz
d672f1dc713ccfcbd7837d220a63b8fa08d0b311 25408 beast-mcmc_1.10.4+dfsg-5.debian.tar.xz
Checksums-Sha256:
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c38fe7be97daa1ff1ffce9c78c0208b82a3091c372a592ed9d170782c1da9426 25408 beast-mcmc_1.10.4+dfsg-5.debian.tar.xz
Files:
912419d44da25de2579a39bf104c013f 5022024 beast-mcmc_1.10.4+dfsg.orig.tar.xz
aaeacdb37e5b0374d3589fb9f08ef968 25408 beast-mcmc_1.10.4+dfsg-5.debian.tar.xz
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Thu Apr 20 11:34:19 UTC 2023 I: Checking whether the package is not for us
Thu Apr 20 11:34:19 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net.
Thu Apr 20 11:34:19 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Thu Apr 20 11:37:49 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net.
W: cgroups are not available on the host, not using them.
unshare: unshare failed: Cannot allocate memory
W: pbuilder: unshare CLONE_NEWNET not available
I: pbuilder: network access is available during build!
I: Current time: Wed Apr 19 23:34:21 -12 2023
I: pbuilder-time-stamp: 1681990461
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [beast-mcmc_1.10.4+dfsg-5.dsc]
I: copying [./beast-mcmc_1.10.4+dfsg.orig.tar.xz]
I: copying [./beast-mcmc_1.10.4+dfsg-5.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Nov 23 19:43:06 2022 -12
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./beast-mcmc_1.10.4+dfsg-5.dsc: no acceptable signature found
dpkg-source: info: extracting beast-mcmc in beast-mcmc-1.10.4+dfsg
dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying enable_hardening.patch
dpkg-source: info: applying fix_classpath_in_build_xml.patch
dpkg-source: info: applying create_soname.patch
dpkg-source: info: applying fix_encoding.patch
dpkg-source: info: applying ignore_mac_install.patch
dpkg-source: info: applying update-ejml.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/5223/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='5223'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/pbuilderrc_AEId --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/b1 --logfile b1/build.log beast-mcmc_1.10.4+dfsg-5.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/sbin/chroot'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 23:43 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 22:20 more
-rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount
-rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 22:20 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/5223/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), javahelper, ant, ant-optional, default-jdk, libjebl2-java, libjam-java, figtree, liboptions-java, libhmsbeagle-java, libcolt-free-java, libmpj-java, r-cran-rjava, libcommons-math-java, libjdom1-java, junit4, libmtj-java, libitext1-java, libejml-java (>= 0.41), libjlapack-java
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on javahelper; however:
Package javahelper is not installed.
pbuilder-satisfydepends-dummy depends on ant; however:
Package ant is not installed.
pbuilder-satisfydepends-dummy depends on ant-optional; however:
Package ant-optional is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk; however:
Package default-jdk is not installed.
pbuilder-satisfydepends-dummy depends on libjebl2-java; however:
Package libjebl2-java is not installed.
pbuilder-satisfydepends-dummy depends on libjam-java; however:
Package libjam-java is not installed.
pbuilder-satisfydepends-dummy depends on figtree; however:
Package figtree is not installed.
pbuilder-satisfydepends-dummy depends on liboptions-java; however:
Package liboptions-java is not installed.
pbuilder-satisfydepends-dummy depends on libhmsbeagle-java; however:
Package libhmsbeagle-java is not installed.
pbuilder-satisfydepends-dummy depends on libcolt-free-java; however:
Package libcolt-free-java is not installed.
pbuilder-satisfydepends-dummy depends on libmpj-java; however:
Package libmpj-java is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-rjava; however:
Package r-cran-rjava is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-math-java; however:
Package libcommons-math-java is not installed.
pbuilder-satisfydepends-dummy depends on libjdom1-java; however:
Package libjdom1-java is not installed.
pbuilder-satisfydepends-dummy depends on junit4; however:
Package junit4 is not installed.
pbuilder-satisfydepends-dummy depends on libmtj-java; however:
Package libmtj-java is not installed.
pbuilder-satisfydepends-dummy depends on libitext1-java; however:
Package libitext1-java is not installed.
pbuilder-satisfydepends-dummy depends on libejml-java (>= 0.41); however:
Package libejml-java is not installed.
pbuilder-satisfydepends-dummy depends on libjlapack-java; however:
Package libjlapack-java is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} ant-optional{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} figtree{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} junit5{a} lib64atomic1{a} lib64gcc-s1{a} lib64stdc++6{a} libactivation-java{a} libapache-pom-java{a} libapiguardian-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libatk1.0-0{a} libauto64fto32f-java{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbatik-java{a} libblas3{a} libbrotli1{a} libbsd0{a} libc6-amd64{a} libcairo2{a} libclang-common-15-dev{a} libclang-cpp15{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclc-15{a} libclc-15-dev{a} libclone-perl{a} libcolt-free-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-io-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-parent-java{a} libconcurrent-java{a} libcups2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libejml-java{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libf2j-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libhamcrest-java{a} libharfbuzz0b{a} libhmsbeagle-java{a} libhmsbeagle1v5{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libitext1-java{a} libitext5-java{a} libjam-java{a} libjaxen-java{a} libjaxp1.3-java{a} libjbig0{a} libjdom1-java{a} libjebl2-java{a} libjetbrains-annotations-java{a} libjlapack-java{a} libjpeg62-turbo{a} libjsr305-java{a} libksba8{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} libllvmspirvlib15{a} liblog4j1.2-java{a} liblombok-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpj-java{a} libmtj-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0{a} libnspr4{a} libnss3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboptions-java{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libregexp-ipv6-perl{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsub-quote-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunivocity-parsers-java{a} liburi-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml2{a} libxmlgraphics-commons-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-opencl-icd{a} netbase{a} ocl-icd-libopencl1{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} r-base-core{a} r-cran-rjava{a} readline-common{a} sensible-utils{a} shared-mime-info{a} ucf{a} unzip{a} wdiff{a} x11-common{a} xdg-utils{a} zip{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libdata-dump-perl libdistro-info-perl libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgtk2.0-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnet-dbus-perl librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libx11-protocol-perl libxstring-perl libxt-dev licensecheck lintian lynx pristine-tar publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg r-base-dev r-doc-html r-recommended strace wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 290 newly installed, 0 to remove and 0 not upgraded.
Need to get 574 MB of archives. After unpacking 1340 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 netbase all 6.4 [12.8 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 hicolor-icon-theme all 0.17-2 [11.4 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 shared-mime-info i386 2.2-1 [730 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf-2.0-0 i386 2.42.10+dfsg-1+b1 [147 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 gtk-update-icon-cache i386 3.24.37-2 [43.9 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 adwaita-icon-theme all 43-1 [5124 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 ca-certificates-java all 20230103 [11.4 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 java-common all 0.74 [6388 B]
Get: 44 http://deb.debian.org/debian bookworm/main i386 libavahi-common-data i386 0.8-9 [107 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libavahi-common3 i386 0.8-9 [43.3 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libdbus-1-3 i386 1.14.6-1 [213 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 libavahi-client3 i386 0.8-9 [47.3 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libcups2 i386 2.4.2-3 [261 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-4 [410 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libnspr4 i386 2:4.35-1 [123 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libnss3 i386 2:3.87.1-1 [1439 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libasound2-data all 1.2.8-1 [20.5 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libasound2 i386 1.2.8-1+b1 [388 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libpcsclite1 i386 1.9.9-2 [50.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jre-headless i386 17.0.6+10-1 [42.2 MB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 default-jre-headless i386 2:1.17-74 [2932 B]
Get: 64 http://deb.debian.org/debian bookworm/main i386 ant all 1.10.13-1 [2161 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 ant-optional all 1.10.13-1 [449 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 at-spi2-common all 2.46.0-5 [162 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 dctrl-tools i386 2.24-3 [105 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 libgtk2.0-common all 2.24.33-2 [2700 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 libatk1.0-0 i386 2.46.0-5 [49.4 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 91 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 98 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB]
Get: 99 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB]
Get: 100 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB]
Get: 101 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 102 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB]
Get: 103 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB]
Get: 104 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB]
Get: 105 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB]
Get: 106 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB]
Get: 107 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB]
Get: 108 http://deb.debian.org/debian bookworm/main i386 libxcomposite1 i386 1:0.4.5-1 [16.9 kB]
Get: 109 http://deb.debian.org/debian bookworm/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB]
Get: 110 http://deb.debian.org/debian bookworm/main i386 libxcursor1 i386 1:1.2.1-1 [42.4 kB]
Get: 111 http://deb.debian.org/debian bookworm/main i386 libxdamage1 i386 1:1.1.6-1 [15.3 kB]
Get: 112 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB]
Get: 113 http://deb.debian.org/debian bookworm/main i386 libxinerama1 i386 2:1.1.4-3 [18.1 kB]
Get: 114 http://deb.debian.org/debian bookworm/main i386 libxrandr2 i386 2:1.5.2-2+b1 [40.8 kB]
Get: 115 http://deb.debian.org/debian bookworm/main i386 libgtk2.0-0 i386 2.24.33-2 [1970 kB]
Get: 116 http://deb.debian.org/debian bookworm/main i386 libglvnd0 i386 1.6.0-1 [42.7 kB]
Get: 117 http://deb.debian.org/debian bookworm/main i386 libdrm-common all 2.4.114-1 [7112 B]
Get: 118 http://deb.debian.org/debian bookworm/main i386 libdrm2 i386 2.4.114-1+b1 [40.8 kB]
Get: 119 http://deb.debian.org/debian bookworm/main i386 libglapi-mesa i386 22.3.6-1+deb12u1 [35.6 kB]
Get: 120 http://deb.debian.org/debian bookworm/main i386 libx11-xcb1 i386 2:1.8.4-2 [192 kB]
Get: 121 http://deb.debian.org/debian bookworm/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB]
Get: 122 http://deb.debian.org/debian bookworm/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB]
Get: 123 http://deb.debian.org/debian bookworm/main i386 libxcb-glx0 i386 1.15-1 [124 kB]
Get: 124 http://deb.debian.org/debian bookworm/main i386 libxcb-present0 i386 1.15-1 [106 kB]
Get: 125 http://deb.debian.org/debian bookworm/main i386 libxcb-randr0 i386 1.15-1 [118 kB]
Get: 126 http://deb.debian.org/debian bookworm/main i386 libxcb-sync1 i386 1.15-1 [109 kB]
Get: 127 http://deb.debian.org/debian bookworm/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB]
Get: 128 http://deb.debian.org/debian bookworm/main i386 libxshmfence1 i386 1.3-1 [8976 B]
Get: 129 http://deb.debian.org/debian bookworm/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB]
Get: 130 http://deb.debian.org/debian bookworm/main i386 libdrm-amdgpu1 i386 2.4.114-1+b1 [24.1 kB]
Get: 131 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB]
Get: 132 http://deb.debian.org/debian bookworm/main i386 libdrm-intel1 i386 2.4.114-1+b1 [67.9 kB]
Get: 133 http://deb.debian.org/debian bookworm/main i386 libdrm-nouveau2 i386 2.4.114-1+b1 [20.7 kB]
Get: 134 http://deb.debian.org/debian bookworm/main i386 libdrm-radeon1 i386 2.4.114-1+b1 [22.8 kB]
Get: 135 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB]
Get: 136 http://deb.debian.org/debian bookworm/main i386 libz3-4 i386 4.8.12-3.1 [7853 kB]
Get: 137 http://deb.debian.org/debian bookworm/main i386 libllvm15 i386 1:15.0.6-4+b1 [26.5 MB]
Get: 138 http://deb.debian.org/debian bookworm/main i386 libsensors-config all 1:3.6.0-7.1 [14.3 kB]
Get: 139 http://deb.debian.org/debian bookworm/main i386 libsensors5 i386 1:3.6.0-7.1 [35.1 kB]
Get: 140 http://deb.debian.org/debian bookworm/main i386 libgl1-mesa-dri i386 22.3.6-1+deb12u1 [7417 kB]
Get: 141 http://deb.debian.org/debian bookworm/main i386 libglx-mesa0 i386 22.3.6-1+deb12u1 [156 kB]
Get: 142 http://deb.debian.org/debian bookworm/main i386 libglx0 i386 1.6.0-1 [36.6 kB]
Get: 143 http://deb.debian.org/debian bookworm/main i386 libgl1 i386 1.6.0-1 [82.1 kB]
Get: 144 http://deb.debian.org/debian bookworm/main i386 libgif7 i386 5.2.1-2.5 [48.3 kB]
Get: 145 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 146 http://deb.debian.org/debian bookworm/main i386 libxtst6 i386 2:1.2.3-1.1 [28.6 kB]
Get: 147 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jre i386 17.0.6+10-1 [167 kB]
Get: 148 http://deb.debian.org/debian bookworm/main i386 default-jre i386 2:1.17-74 [1056 B]
Get: 149 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jdk-headless i386 17.0.6+10-1 [309 MB]
Get: 150 http://deb.debian.org/debian bookworm/main i386 default-jdk-headless i386 2:1.17-74 [1108 B]
Get: 151 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jdk i386 17.0.6+10-1 [4538 kB]
Get: 152 http://deb.debian.org/debian bookworm/main i386 default-jdk i386 2:1.17-74 [1068 B]
Get: 153 http://deb.debian.org/debian bookworm/main i386 libassuan0 i386 2.5.5-5 [50.3 kB]
Get: 154 http://deb.debian.org/debian bookworm/main i386 gpgconf i386 2.2.40-1.1 [572 kB]
Get: 155 http://deb.debian.org/debian bookworm/main i386 libksba8 i386 1.6.3-2 [135 kB]
Get: 156 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 157 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 158 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 159 http://deb.debian.org/debian bookworm/main i386 libnpth0 i386 1.6-3 [19.1 kB]
Get: 160 http://deb.debian.org/debian bookworm/main i386 dirmngr i386 2.2.40-1.1 [819 kB]
Get: 161 http://deb.debian.org/debian bookworm/main i386 gnupg-l10n all 2.2.40-1.1 [1093 kB]
Get: 162 http://deb.debian.org/debian bookworm/main i386 gnupg-utils i386 2.2.40-1.1 [973 kB]
Get: 163 http://deb.debian.org/debian bookworm/main i386 gpg i386 2.2.40-1.1 [991 kB]
Get: 164 http://deb.debian.org/debian bookworm/main i386 pinentry-curses i386 1.2.1-1 [79.0 kB]
Get: 165 http://deb.debian.org/debian bookworm/main i386 gpg-agent i386 2.2.40-1.1 [715 kB]
Get: 166 http://deb.debian.org/debian bookworm/main i386 gpg-wks-client i386 2.2.40-1.1 [551 kB]
Get: 167 http://deb.debian.org/debian bookworm/main i386 gpg-wks-server i386 2.2.40-1.1 [541 kB]
Get: 168 http://deb.debian.org/debian bookworm/main i386 gpgsm i386 2.2.40-1.1 [691 kB]
Get: 169 http://deb.debian.org/debian bookworm/main i386 gnupg all 2.2.40-1.1 [846 kB]
Get: 170 http://deb.debian.org/debian bookworm/main i386 libfile-dirlist-perl all 0.05-3 [7600 B]
Get: 171 http://deb.debian.org/debian bookworm/main i386 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 172 http://deb.debian.org/debian bookworm/main i386 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get: 173 http://deb.debian.org/debian bookworm/main i386 libfile-touch-perl all 0.12-2 [8816 B]
Get: 174 http://deb.debian.org/debian bookworm/main i386 libio-pty-perl i386 1:1.17-1 [36.5 kB]
Get: 175 http://deb.debian.org/debian bookworm/main i386 libipc-run-perl all 20220807.0-1 [104 kB]
Get: 176 http://deb.debian.org/debian bookworm/main i386 libclass-method-modifiers-perl all 2.14-1 [18.1 kB]
Get: 177 http://deb.debian.org/debian bookworm/main i386 libclass-xsaccessor-perl i386 1.19-4+b1 [38.0 kB]
Get: 178 http://deb.debian.org/debian bookworm/main i386 libb-hooks-op-check-perl i386 0.22-2+b1 [10.6 kB]
Get: 179 http://deb.debian.org/debian bookworm/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get: 180 http://deb.debian.org/debian bookworm/main i386 libdevel-callchecker-perl i386 0.008-2 [15.8 kB]
Get: 181 http://deb.debian.org/debian bookworm/main i386 libparams-classify-perl i386 0.015-2+b1 [23.7 kB]
Get: 182 http://deb.debian.org/debian bookworm/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 183 http://deb.debian.org/debian bookworm/main i386 libimport-into-perl all 1.002005-2 [11.3 kB]
Get: 184 http://deb.debian.org/debian bookworm/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get: 185 http://deb.debian.org/debian bookworm/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get: 186 http://deb.debian.org/debian bookworm/main i386 libmoo-perl all 2.005005-1 [58.0 kB]
Get: 187 http://deb.debian.org/debian bookworm/main i386 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 188 http://deb.debian.org/debian bookworm/main i386 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 189 http://deb.debian.org/debian bookworm/main i386 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 190 http://deb.debian.org/debian bookworm/main i386 libfile-listing-perl all 6.15-1 [12.6 kB]
Get: 191 http://deb.debian.org/debian bookworm/main i386 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get: 192 http://deb.debian.org/debian bookworm/main i386 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 193 http://deb.debian.org/debian bookworm/main i386 liburi-perl all 5.17-1 [90.4 kB]
Get: 194 http://deb.debian.org/debian bookworm/main i386 libhtml-parser-perl i386 3.81-1 [102 kB]
Get: 195 http://deb.debian.org/debian bookworm/main i386 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 196 http://deb.debian.org/debian bookworm/main i386 libclone-perl i386 0.46-1 [13.8 kB]
Get: 197 http://deb.debian.org/debian bookworm/main i386 libio-html-perl all 1.004-3 [16.2 kB]
Get: 198 http://deb.debian.org/debian bookworm/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 199 http://deb.debian.org/debian bookworm/main i386 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 200 http://deb.debian.org/debian bookworm/main i386 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get: 201 http://deb.debian.org/debian bookworm/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 202 http://deb.debian.org/debian bookworm/main i386 perl-openssl-defaults i386 7+b1 [7920 B]
Get: 203 http://deb.debian.org/debian bookworm/main i386 libnet-ssleay-perl i386 1.92-2+b1 [318 kB]
Get: 204 http://deb.debian.org/debian bookworm/main i386 libio-socket-ssl-perl all 2.081-2 [219 kB]
Get: 205 http://deb.debian.org/debian bookworm/main i386 libnet-http-perl all 6.22-1 [25.3 kB]
Get: 206 http://deb.debian.org/debian bookworm/main i386 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get: 207 http://deb.debian.org/debian bookworm/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 208 http://deb.debian.org/debian bookworm/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 209 http://deb.debian.org/debian bookworm/main i386 libwww-perl all 6.68-1 [186 kB]
Get: 210 http://deb.debian.org/debian bookworm/main i386 patchutils i386 0.4.2-1 [79.6 kB]
Get: 211 http://deb.debian.org/debian bookworm/main i386 wdiff i386 1.2.2-5 [120 kB]
Get: 212 http://deb.debian.org/debian bookworm/main i386 devscripts i386 2.23.3 [1072 kB]
Get: 213 http://deb.debian.org/debian bookworm/main i386 libactivation-java all 1.2.0-2 [84.7 kB]
Get: 214 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB]
Get: 215 http://deb.debian.org/debian bookworm/main i386 java-wrappers all 0.4 [8916 B]
Get: 216 http://deb.debian.org/debian bookworm/main i386 libjaxp1.3-java all 1.3.05-6 [227 kB]
Get: 217 http://deb.debian.org/debian bookworm/main i386 libxml-commons-external-java all 1.4.01-5 [240 kB]
Get: 218 http://deb.debian.org/debian bookworm/main i386 libapache-pom-java all 29-2 [5276 B]
Get: 219 http://deb.debian.org/debian bookworm/main i386 libcommons-parent-java all 56-1 [10.8 kB]
Get: 220 http://deb.debian.org/debian bookworm/main i386 libcommons-io-java all 2.11.0-2 [319 kB]
Get: 221 http://deb.debian.org/debian bookworm/main i386 libcommons-logging-java all 1.2-3 [62.4 kB]
Get: 222 http://deb.debian.org/debian bookworm/main i386 libxmlgraphics-commons-java all 2.8-2 [623 kB]
Get: 223 http://deb.debian.org/debian bookworm/main i386 libbatik-java all 1.16+dfsg-1 [3908 kB]
Get: 224 http://deb.debian.org/debian bookworm/main i386 libitext5-java all 5.5.13.3-2 [2665 kB]
Get: 225 http://deb.debian.org/debian bookworm/main i386 libjam-java all 0.1.git20180106.740247a+dfsg-1 [164 kB]
Get: 226 http://deb.debian.org/debian bookworm/main i386 libjebl2-java all 0.1+git20201011.969bd4b-1 [516 kB]
Get: 227 http://deb.debian.org/debian bookworm/main i386 figtree all 1.4.4-5 [872 kB]
Get: 228 http://deb.debian.org/debian bookworm/main i386 javahelper all 0.78 [97.2 kB]
Get: 229 http://deb.debian.org/debian bookworm/main i386 libhamcrest-java all 2.2-1 [121 kB]
Get: 230 http://deb.debian.org/debian bookworm/main i386 junit4 all 4.13.2-3 [348 kB]
Get: 231 http://deb.debian.org/debian bookworm/main i386 libapiguardian-java all 1.1.2-1 [4656 B]
Get: 232 http://deb.debian.org/debian bookworm/main i386 libopentest4j-java all 1.2.0-4 [9516 B]
Get: 233 http://deb.debian.org/debian bookworm/main i386 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB]
Get: 234 http://deb.debian.org/debian bookworm/main i386 libpicocli-java all 4.6.2-2 [390 kB]
Get: 235 http://deb.debian.org/debian bookworm/main i386 libunivocity-parsers-java all 2.9.1-1 [397 kB]
Get: 236 http://deb.debian.org/debian bookworm/main i386 junit5 all 5.9.2-1 [2398 kB]
Get: 237 http://deb.debian.org/debian bookworm/main i386 libc6-amd64 i386 2.36-9 [2584 kB]
Get: 238 http://deb.debian.org/debian bookworm/main i386 lib64atomic1 i386 12.2.0-14 [9292 B]
Get: 239 http://deb.debian.org/debian bookworm/main i386 lib64gcc-s1 i386 12.2.0-14 [49.7 kB]
Get: 240 http://deb.debian.org/debian bookworm/main i386 lib64stdc++6 i386 12.2.0-14 [594 kB]
Get: 241 http://deb.debian.org/debian bookworm/main i386 libauto64fto32f-java all 2.1+ds-1 [14.2 kB]
Get: 242 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 243 http://deb.debian.org/debian bookworm/main i386 libclang-common-15-dev i386 1:15.0.6-4+b1 [5935 kB]
Get: 244 http://deb.debian.org/debian bookworm/main i386 libclang-cpp15 i386 1:15.0.6-4+b1 [13.3 MB]
Get: 245 http://deb.debian.org/debian bookworm/main i386 libclc-15-dev all 1:15.0.6-4 [53.6 kB]
Get: 246 http://deb.debian.org/debian bookworm/main i386 libclc-15 all 1:15.0.6-4 [10.1 MB]
Get: 247 http://deb.debian.org/debian bookworm/main i386 libconcurrent-java all 1.3.4-6 [140 kB]
Get: 248 http://deb.debian.org/debian bookworm/main i386 libcolt-free-java all 1.2.0+dfsg-7 [434 kB]
Get: 249 http://deb.debian.org/debian bookworm/main i386 libcommons-cli-java all 1.5.0-1 [60.0 kB]
Get: 250 http://deb.debian.org/debian bookworm/main i386 libcommons-codec-java all 1.15-1 [292 kB]
Get: 251 http://deb.debian.org/debian bookworm/main i386 libcommons-math-java all 2.2-8 [926 kB]
Get: 252 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB]
Get: 253 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB]
Get: 254 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 255 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB]
Get: 256 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-8 [419 kB]
Get: 257 http://deb.debian.org/debian bookworm/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB]
Get: 258 http://deb.debian.org/debian bookworm/main i386 libjetbrains-annotations-java all 23.0.0-2 [31.3 kB]
Get: 259 http://deb.debian.org/debian bookworm/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB]
Get: 260 http://deb.debian.org/debian bookworm/main i386 liblombok-java all 1.18.24-1 [1774 kB]
Get: 261 http://deb.debian.org/debian bookworm/main i386 libejml-java all 0.41+ds-2 [2499 kB]
Get: 262 http://deb.debian.org/debian bookworm/main i386 libf2j-java all 0.8.1+dfsg-5 [62.3 kB]
Get: 263 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 264 http://deb.debian.org/debian bookworm/main i386 ocl-icd-libopencl1 i386 2.3.1-1 [45.4 kB]
Get: 265 http://deb.debian.org/debian bookworm/main i386 libllvmspirvlib15 i386 15.0.0-1 [906 kB]
Get: 266 http://deb.debian.org/debian bookworm/main i386 mesa-opencl-icd i386 22.3.6-1+deb12u1 [18.2 MB]
Get: 267 http://deb.debian.org/debian bookworm/main i386 libhmsbeagle1v5 i386 3.1.2+dfsg-13 [105 kB]
Get: 268 http://deb.debian.org/debian bookworm/main i386 libhmsbeagle-java i386 3.1.2+dfsg-13 [26.7 kB]
Get: 269 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get: 270 http://deb.debian.org/debian bookworm/main i386 libitext1-java all 1.4-7 [1257 kB]
Get: 271 http://deb.debian.org/debian bookworm/main i386 libjaxen-java all 1.1.6-4 [214 kB]
Get: 272 http://deb.debian.org/debian bookworm/main i386 libjdom1-java all 1.1.3-3 [155 kB]
Get: 273 http://deb.debian.org/debian bookworm/main i386 libjlapack-java all 0.8~dfsg-5 [925 kB]
Get: 274 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 275 http://deb.debian.org/debian bookworm/main i386 liblog4j1.2-java all 1.2.17-11 [444 kB]
Get: 276 http://deb.debian.org/debian bookworm/main i386 libmpj-java all 0.44+dfsg-4 [447 kB]
Get: 277 http://deb.debian.org/debian bookworm/main i386 libmtj-java all 0.9.14+dfsg-7 [126 kB]
Get: 278 http://deb.debian.org/debian bookworm/main i386 liboptions-java all 0.0.20120113-3 [28.7 kB]
Get: 279 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB]
Get: 280 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B]
Get: 281 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 282 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB]
Get: 283 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB]
Get: 284 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 285 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB]
Get: 286 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB]
Get: 287 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB]
Get: 288 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 289 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB]
Get: 290 http://deb.debian.org/debian bookworm/main i386 r-cran-rjava i386 1.0-6-1+b1 [916 kB]
Fetched 574 MB in 12s (48.9 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:i386.
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Setting up libpython3.11-minimal:i386 (3.11.2-6) ...
Setting up libexpat1:i386 (2.5.0-1) ...
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Unpacking libreadline8:i386 (8.2-1.3) ...
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Setting up python3-minimal (3.11.2-1+b1) ...
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Unpacking libmagic1:i386 (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
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Setting up libksba8:i386 (1.6.3-2) ...
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Setting up libjebl2-java (0.1+git20201011.969bd4b-1) ...
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Setting up libxau6:i386 (1:1.0.9-1) ...
Setting up libpsl5:i386 (0.21.2-1) ...
Setting up libopentest4j-reporting-java (0.1.0-M1-2) ...
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Setting up liblerc4:i386 (4.0.0+ds-2) ...
Setting up libjsr305-java (0.1~+svn49-11) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmtj-java (0.9.14+dfsg-7) ...
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Setting up libdatrie1:i386 (0.2.13-2+b1) ...
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Setting up libclass-method-modifiers-perl (2.14-1) ...
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Setting up libglib2.0-0:i386 (2.74.6-2) ...
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
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Updating certificates in /etc/ssl/certs...
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Setting up libpaper1:i386 (1.1.29) ...
Creating config file /etc/papersize with new version
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Setting up libxdamage1:i386 (1:1.1.6-1) ...
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Setting up libxext6:i386 (2:1.3.4-1+b1) ...
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
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Setting up libclang-cpp15 (1:15.0.6-4+b1) ...
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Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ...
Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ...
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Setting up libxft2:i386 (2.3.6-1) ...
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Setting up libclang-common-15-dev (1:15.0.6-4+b1) ...
Setting up libxi6:i386 (2:1.8-1+b1) ...
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Setting up libbatik-java (1.16+dfsg-1) ...
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Setting up r-base-core (4.2.2.20221110-2) ...
Creating config file /etc/R/Renviron with new version
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Setting up mesa-opencl-icd:i386 (22.3.6-1+deb12u1) ...
Setting up libgtk2.0-0:i386 (2.24.33-2) ...
Setting up libhmsbeagle1v5:i386 (3.1.2+dfsg-13) ...
Setting up libhmsbeagle-java:i386 (3.1.2+dfsg-13) ...
Setting up openjdk-17-jre-headless:i386 (17.0.6+10-1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20230103) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem
Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up junit4 (4.13.2-3) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up default-jre-headless (2:1.17-74) ...
Setting up libwww-perl (6.68-1) ...
Setting up openjdk-17-jre:i386 (17.0.6+10-1) ...
Setting up libconcurrent-java (1.3.4-6) ...
Setting up default-jre (2:1.17-74) ...
Setting up devscripts (2.23.3) ...
Setting up openjdk-17-jdk-headless:i386 (17.0.6+10-1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up r-cran-rjava (1.0-6-1+b1) ...
Setting up ant (1.10.13-1) ...
Setting up libcolt-free-java (1.2.0+dfsg-7) ...
Setting up javahelper (0.78) ...
Setting up junit5 (5.9.2-1) ...
Setting up openjdk-17-jdk:i386 (17.0.6+10-1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up ant-optional (1.10.13-1) ...
Setting up default-jdk-headless (2:1.17-74) ...
Setting up libejml-java (0.41+ds-2) ...
Setting up default-jdk (2:1.17-74) ...
Setting up figtree (1.4.4-5) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for ca-certificates-java (20230103) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/beast-mcmc-1.10.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../beast-mcmc_1.10.4+dfsg-5_source.changes
dpkg-buildpackage: info: source package beast-mcmc
dpkg-buildpackage: info: source version 1.10.4+dfsg-5
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with javahelper
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/beast-mcmc-1.10.4+dfsg'
rm -f native/*\.o native/*\.so native/*\.so\.*
ant clean
Buildfile: /build/beast-mcmc-1.10.4+dfsg/build.xml
clean:
BUILD SUCCESSFUL
Total time: 0 seconds
make[1]: Leaving directory '/build/beast-mcmc-1.10.4+dfsg'
jh_clean
dh_clean
debian/rules binary
dh binary --with javahelper
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
jh_linkjars
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/beast-mcmc-1.10.4+dfsg'
# CLASSPATH=/usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-junit.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/beagle.jar:/usr/share/java/mpj.jar:/usr/share/java/org.boehn.kmlframework.jar:/usr/share/java/itext1-1.4.jar:/usr/share/java/junit4.jar:/usr/share/java/figtree.jar:lib/colt.jar:/usr/share/java/options.jar:/usr/share/java/mtj.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar:/usr/share/java/EJML.jar:/usr/share/java/jlapack-lapack.jar:/usr/lib/R/site-library/rJava/jri/JRI.jar
mkdir -p lib
ant build
Buildfile: /build/beast-mcmc-1.10.4+dfsg/build.xml
init:
[echo] BEAST: /build/beast-mcmc-1.10.4+dfsg/build.xml
compile-all:
[mkdir] Created dir: /build/beast-mcmc-1.10.4+dfsg/build
[javac] /build/beast-mcmc-1.10.4+dfsg/build.xml:102: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
[javac] Using javac -source 1.6 is no longer supported, switching to 7
[javac] Using javac -target 1.6 is no longer supported, switching to 7
[javac] Compiling 2503 source files to /build/beast-mcmc-1.10.4+dfsg/build
[javac] warning: [options] bootstrap class path not set in conjunction with -source 7
[javac] warning: [options] source value 7 is obsolete and will be removed in a future release
[javac] warning: [options] target value 7 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beauti/BeautiApp.java:37: warning: [removal] AccessControlException in java.security has been deprecated and marked for removal
[javac] import java.security.AccessControlException;
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beauti/BeautiApp.java:37: warning: [removal] AccessControlException in java.security has been deprecated and marked for removal
[javac] import java.security.AccessControlException;
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beauti/BeautiApp.java:37: warning: [removal] AccessControlException in java.security has been deprecated and marked for removal
[javac] import java.security.AccessControlException;
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beauti/BeautiApp.java:37: warning: [removal] AccessControlException in java.security has been deprecated and marked for removal
[javac] import java.security.AccessControlException;
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beauti/BeautiApp.java:37: warning: [removal] AccessControlException in java.security has been deprecated and marked for removal
[javac] import java.security.AccessControlException;
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/xml/XMLObject.java:381: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] d = new Double(token);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/xml/XMLObject.java:399: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] Integer d = new Integer(st.nextToken());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/gui/components/WholeNumberField.java:118: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] return new Integer(getText());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/gui/components/WholeNumberField.java:126: warning: [removal] Long(String) in Long has been deprecated and marked for removal
[javac] return new Long(getText());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beast/RBeastMain.java:43: warning: [removal] SecurityManager in java.lang has been deprecated and marked for removal
[javac] final SecurityManager securityManager = new SecurityManager() {
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beast/RBeastMain.java:43: warning: [removal] SecurityManager in java.lang has been deprecated and marked for removal
[javac] final SecurityManager securityManager = new SecurityManager() {
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beast/RBeastMain.java:51: warning: [removal] setSecurityManager(SecurityManager) in System has been deprecated and marked for removal
[javac] System.setSecurityManager(securityManager);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/beast/RBeastMain.java:55: warning: [removal] setSecurityManager(SecurityManager) in System has been deprecated and marked for removal
[javac] System.setSecurityManager(null);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/io/NexusImporter.java:961: warning: [removal] Float(String) in Float has been deprecated and marked for removal
[javac] final Float value = new Float(c.substring(2, e));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/io/NexusImporter.java:1433: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] return new Double(value);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/gui/components/RealNumberField.java:230: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] return new Double(getText());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/gui/FileDrop.java:458: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
[javac] supportsDnD = new Boolean( support );
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/realtime/DistanceMatrixInsertionTest.java:133: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] data[i][j] = new Double(matrix.getElement(i, j-1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/tools/MixtureModelLogAnalyser.java:149: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] hash.put(split[discreteVariableIndex], new Integer(hash.get(split[discreteVariableIndex]) + 1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/tools/MixtureModelLogAnalyser.java:152: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] hash.put(split[discreteVariableIndex], new Integer(1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/app/tools/TreeAnnotator.java:914: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] freq[index] = new Double(values.get(key));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/alignment/GapUtils.java:54: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] gaps.add(new Integer(i-gapStart));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/coalescent/structure/Event.java:94: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] return new Double(time).compareTo(e2.time);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/colouring/StructuredColourSampler.java:146: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double height = new Double(tree.getNodeHeight(node));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/parsimony/Parsimony.java:159: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] ((MutableTree)tree).setNodeAttribute(node, attributeName, new Integer(state));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/parsimony/Parsimony.java:261: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] ((MutableTree)tree).setNodeAttribute(node, "r"+attributeName, new Integer(state));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evolution/parsimony/SankoffParsimony.java:199: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] observedStates.add(new Integer(k));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/speciation/SpeciesTreeModel.java:932: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] sTree.setAttribute("check", new Double(rootHeight));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/inference/model/MatrixParameter.java:217: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] double datum = new Double(st.nextToken());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/AntigenicLikelihood.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double offset = strainDates.get(i) - new Double(earliest);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/TreeClusteringVirusesPrior.java:792: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] causalList[curNode].add(new Integer(0));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/TreeClusteringVirusesPrior.java:869: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] causalList[curNode].add(new Integer(bits[i]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/AGLikelihoodCluster.java:343: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double offset = strainDates.get(i) - new Double(earliest);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/AGLikelihoodTreeCluster.java:433: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double offset = strainDates.get(i) - new Double(earliest);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterGibbsOperator.java:217: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(0));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterGibbsOperator.java:231: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(nodeLevel.getFirst()+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterGibbsOperator.java:244: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(nodeLevel.getFirst()+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterGibbsOperator.java:266: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities.addLast(new Integer( site_test));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:859: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] if(m.get(new Integer(clusterLabel[i])) == null ){
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:861: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(oldclusterLabel[i]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:861: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(oldclusterLabel[i]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:866: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(maxOldLabel));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:866: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(maxOldLabel));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:871: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] clusterLabel[i] = m.get(new Integer( clusterLabel[i])).intValue();
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:1151: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(cutNodes[i]), new Integer(i+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:1151: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(cutNodes[i]), new Integer(i+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/TreeClusterSequentialSampling.java:1196: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] membership[ curElement.getNumber()] = m.get(new Integer( curElement.getNumber()));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:493: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:542: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities2.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:560: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] jointPossibilities.addLast(new Integer(nodeNumber));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:569: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] jointPossibilities.addLast(new Integer(nodeNumber));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:889: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:933: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities2.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:970: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:1014: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities2.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:1173: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:1255: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:1364: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities1.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:1391: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] possibilities2.addLast(new Integer(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2307: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] if(m.get(new Integer(clusterLabel[i])) == null ){
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2309: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(oldclusterLabel[i]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2309: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(oldclusterLabel[i]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2318: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(maxOldLabel));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2318: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(clusterLabel[i]), new Integer(maxOldLabel));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2323: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] clusterLabel[i] = m.get(new Integer( clusterLabel[i])).intValue();
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2586: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(0));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2601: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(nodeLevel.getFirst()+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2614: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] nodeLevel.add(new Integer(nodeLevel.getFirst()+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2903: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(cutNodes[i]), new Integer(i+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2903: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] m.put(new Integer(cutNodes[i]), new Integer(i+1));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/operators/TreeClusterAlgorithmOperator.java:2948: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] membership[ curElement.getNumber()] = m.get(new Integer( curElement.getNumber()));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/antigenic/phyloclustering/statistics/ActiveIndicatorsStatistic.java:45: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] activeNodes.addLast(new Double(i));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/arg/ARGTraceAnalysis.java:144: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] meanTree.setNodeAttribute(node1, "upper", new Double(dr.stats.DiscreteStatistics.quantile(0.975, heights)));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/arg/ARGTraceAnalysis.java:145: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] meanTree.setNodeAttribute(node1, "lower", new Double(dr.stats.DiscreteStatistics.quantile(0.025, heights)));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/continuous/SampledMultivariateTraitLikelihood.java:146: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] if (new Double(logL).isNaN()) {
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/continuous/SampledMultivariateTraitLikelihood.java:168: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] if (new Double(logL).isNaN()) {
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/coalescent/GaussianProcessSkytrackParser.java:86: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] lambdas.add(new Double(fieldsArray[lambdaBoundIndex]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/coalescent/GaussianProcessSkytrackParser.java:87: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] precisions.add(new Double(fieldsArray[precisionIndex]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/coalescent/GaussianProcessSkytrackParser.java:88: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] tmrcas.add(new Double(fieldsArray[tmrcaIndex]));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/coalescent/GaussianProcessSkytrackParser.java:235: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] vals.add(new Double(valStr));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodelxml/treelikelihood/TreeTraitParserUtilities.java:365: warning: [removal] Double(String) in Double has been deprecated and marked for removal
[javac] value = new Double(oneValue);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodelxml/treelikelihood/TreeTraitParserUtilities.java:413: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] if ((new Double(allValues[i])).isNaN()) {
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/continuous/SimulateTrait.java:78: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] tree.setNodeAttribute(node, traitName, new Double(value));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:58: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double tD = new Double(t);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:59: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double vD = new Double(v);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:90: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double tD = new Double(t.doubleValue());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:95: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double vD = new Double(v.doubleValue());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:108: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double tD = new Double(t.doubleValue());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:113: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double vD = new Double(v.doubleValue());
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:142: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] Double tD = new Double(t);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:175: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] int index = Collections.binarySearch(times, new Double(start));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/epidemiology/DynamicalVariable.java:182: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] index = Collections.binarySearch(times, new Double(finish));
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/tree/HiddenLinkageLogger.java:55: warning: [removal] Long(long) in Long has been deprecated and marked for removal
[javac] values[0] = new Long(state).toString();
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/tree/HiddenLinkageLogger.java:57: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] values[i] = new Integer(hlm.getLinkageGroupId(hlm.getData().getReadsTaxa().getTaxon(i-1))).toString();
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/treedatalikelihood/continuous/cdi/MultivariateIntegrator.java:534: warning: [removal] Long(long) in Long has been deprecated and marked for removal
[javac] total = new Long(0);
[javac] ^
[javac] /build/beast-mcmc-1.10.4+dfsg/src/dr/evomodel/treelikelihood/utilities/CompleteHistoryLogger.java:165: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] return new Integer(value);
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 100 warnings
[javac] only showing the first 100 warnings, of 101 total; use -Xmaxwarns if you would like to see more
[javac] Creating empty /build/beast-mcmc-1.10.4+dfsg/build/dr/evomodel/alloppnet/package-info.class
[echo] Successfully compiled.
dist:
[mkdir] Created dir: /build/beast-mcmc-1.10.4+dfsg/build/dist
[jar] Building jar: /build/beast-mcmc-1.10.4+dfsg/build/dist/beast.jar
[jar] Building jar: /build/beast-mcmc-1.10.4+dfsg/build/dist/beauti.jar
[jar] Building jar: /build/beast-mcmc-1.10.4+dfsg/build/dist/trace.jar
linux:
[mkdir] Created dir: /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4
[copy] Copying 6 files to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/bin
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/doc
[copy] Copying 158 files to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples
[copy] Copying 18 files to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4
[copy] Copying 1 file to /build/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4
[echo] Have to tar manaully, because [ANT Bug 550] the tar task change the mode of the executables files.
[echo] Linux/Unix version release is finished.
build:
BUILD SUCCESSFUL
Total time: 1 minute 1 second
# FIXME: There is no such file build_tracer.xml any more
# ant -buildfile build_tracer.xml dist
# native/compileNativeLinux.sh does not create dynamic libraries
cd native ; /usr/bin/make -f Makefile.linux JAVA_HOME=/usr/lib/jvm/default-java
make[2]: Entering directory '/build/beast-mcmc-1.10.4+dfsg/native'
gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -c NucleotideLikelihoodCore.c
gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -shared -Wl,-soname,libNucleotideLikelihoodCore.so.0 -o libNucleotideLikelihoodCore.so.0 NucleotideLikelihoodCore.o
make[2]: Leaving directory '/build/beast-mcmc-1.10.4+dfsg/native'
make[1]: Leaving directory '/build/beast-mcmc-1.10.4+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/beast-mcmc-1.10.4+dfsg'
#####################################################################
## Run test suite ##
## -------------- ##
## While this test suite runs quite a bit of time (about 30min) it ##
## is recommended to be run at least once per new version upload ##
#####################################################################
#
# /usr/lib/jvm/default-java/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-junit.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/beagle.jar:/usr/share/java/mpj.jar:/usr/share/java/org.boehn.kmlframework.jar:/usr/share/java/itext1-1.4.jar:/usr/share/java/junit4.jar:/usr/share/java/figtree.jar:lib/colt.jar:/usr/share/java/options.jar:/usr/share/java/mtj.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar:/usr/share/java/EJML.jar:/usr/share/java/jlapack-lapack.jar:/usr/lib/R/site-library/rJava/jri/JRI.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml junit
make[1]: Leaving directory '/build/beast-mcmc-1.10.4+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
dh_install
jh_installjavadoc
dh_installdocs
dh_installchangelogs
dh_installman
dh_installmenu
dh_perl
dh_link
jh_installlibs
jh_classpath
jh_manifest
jh_exec
jh_depends
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dwz: debian/libnucleotidelikelihoodcore0/usr/lib/libNucleotideLikelihoodCore.so.0: .debug_info section not present
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package beast-mcmc-examples: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package libnucleotidelikelihoodcore0: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package beast-mcmc: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package libnucleotidelikelihoodcore0: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'beast-mcmc' in '../beast-mcmc_1.10.4+dfsg-5_all.deb'.
dpkg-deb: building package 'libnucleotidelikelihoodcore0' in '../libnucleotidelikelihoodcore0_1.10.4+dfsg-5_i386.deb'.
dpkg-deb: building package 'libnucleotidelikelihoodcore0-dbgsym' in '../libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-5_i386.deb'.
dpkg-deb: building package 'beast-mcmc-examples' in '../beast-mcmc-examples_1.10.4+dfsg-5_all.deb'.
dpkg-genbuildinfo --build=binary -O../beast-mcmc_1.10.4+dfsg-5_i386.buildinfo
dpkg-genchanges --build=binary -O../beast-mcmc_1.10.4+dfsg-5_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/5223 and its subdirectories
I: Current time: Wed Apr 19 23:37:48 -12 2023
I: pbuilder-time-stamp: 1681990668
Thu Apr 20 11:37:49 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net.
Thu Apr 20 11:37:49 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net.
Thu Apr 20 11:40:01 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net.
Thu Apr 20 11:40:01 UTC 2023 I: beast-mcmc_1.10.4+dfsg-5_i386.changes:
Format: 1.8
Date: Thu, 24 Nov 2022 02:40:16 -0500
Source: beast-mcmc
Binary: beast-mcmc beast-mcmc-examples libnucleotidelikelihoodcore0 libnucleotidelikelihoodcore0-dbgsym
Architecture: all i386
Version: 1.10.4+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
beast-mcmc - Bayesian MCMC phylogenetic inference
beast-mcmc-examples - Bayesian MCMC phylogenetic inference - example data
libnucleotidelikelihoodcore0 - implementation of LikelihoodCore for nucleotides used by beast-mc
Changes:
beast-mcmc (1.10.4+dfsg-5) unstable; urgency=medium
.
* Team upload.
* Refresh ignore_mac_install.patch.
* Adjust update-ejml.patch to build with libejml-java 0.41.
Checksums-Sha1:
4f73e6c7c339650e5d431f91d9b106458436619c 2036460 beast-mcmc-examples_1.10.4+dfsg-5_all.deb
2962b53ff48db19e657e08e234e827f2fa4f2171 5772720 beast-mcmc_1.10.4+dfsg-5_all.deb
f0237ad497cc80516377638a2b97cdf58132437c 14246 beast-mcmc_1.10.4+dfsg-5_i386.buildinfo
84bb6a31c55eeab049d9f989a803e6c560aceb7c 2048 libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-5_i386.deb
e8f17e5a3d6104124558a744efc411d6cb044e06 6856 libnucleotidelikelihoodcore0_1.10.4+dfsg-5_i386.deb
Checksums-Sha256:
e3d76d2efd9ff2d5bf949e6d272008618b5191ac8e0ecb08b21ce0da79563ead 2036460 beast-mcmc-examples_1.10.4+dfsg-5_all.deb
0ec955bc799cf726f625e9e14ee764c761db55dd94f0a752ac93f64e85247684 5772720 beast-mcmc_1.10.4+dfsg-5_all.deb
1345e597e3e7fcc2165ba5386ce729ece4510cc86ba005bce35836188c469dfc 14246 beast-mcmc_1.10.4+dfsg-5_i386.buildinfo
a9facee4d16593ba76c474f07ca9181bd8ba21e43375d97aaf1ccc88288a9f28 2048 libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-5_i386.deb
f3902c6a482f0c91c115f1b1acb454a4b0c4283ec0f782dcc558b16c391656d0 6856 libnucleotidelikelihoodcore0_1.10.4+dfsg-5_i386.deb
Files:
cce417fc94963ae3b05635a50a666b2e 2036460 doc optional beast-mcmc-examples_1.10.4+dfsg-5_all.deb
fef4277d0f0c61705e2487a5e54c485c 5772720 science optional beast-mcmc_1.10.4+dfsg-5_all.deb
3d196ce7c47b3987d16bafb2c262d09d 14246 science optional beast-mcmc_1.10.4+dfsg-5_i386.buildinfo
c26d6946416f89a70ae42217578c6ba2 2048 debug optional libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-5_i386.deb
d23a790e3a1780c2beadcd10f4c05b47 6856 libs optional libnucleotidelikelihoodcore0_1.10.4+dfsg-5_i386.deb
Thu Apr 20 11:40:03 UTC 2023 I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/beast-mcmc_1.10.4+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/beast-mcmc_1.10.4+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/beast-mcmc_1.10.4+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/b1/beast-mcmc_1.10.4+dfsg-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.GYLBVYrG/b2/beast-mcmc_1.10.4+dfsg-5_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.568s)
0.568s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.121s)
0.120s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.001s)
0.001s 1 call specialize
Thu Apr 20 11:40:04 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Thu Apr 20 11:40:04 UTC 2023 I: beast-mcmc from bookworm built successfully and reproducibly on i386.
Thu Apr 20 11:40:06 UTC 2023 I: Submitting .buildinfo files to external archives:
Thu Apr 20 11:40:06 UTC 2023 I: Submitting 16K b1/beast-mcmc_1.10.4+dfsg-5_i386.buildinfo.asc
Thu Apr 20 11:40:08 UTC 2023 I: Submitting 16K b2/beast-mcmc_1.10.4+dfsg-5_i386.buildinfo.asc
Thu Apr 20 11:40:09 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Apr 20 11:40:09 UTC 2023 I: Done submitting .buildinfo files.
Thu Apr 20 11:40:09 UTC 2023 I: Removing signed beast-mcmc_1.10.4+dfsg-5_i386.buildinfo.asc files:
removed './b1/beast-mcmc_1.10.4+dfsg-5_i386.buildinfo.asc'
removed './b2/beast-mcmc_1.10.4+dfsg-5_i386.buildinfo.asc'